Joel S. Bader

25 papers A 1Misc 3Journal 19Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
Prioritization of causal genes from genome-wide association studies by Bayesian data integration across loci.
PLoS Comput. Biol.
Zeinab Mousavi, Marios Arvanitis, Thuyvy Duong, Jennifer A. Brody, Alexis Battle, Nona Sotoodehnia, Ali Shojaie, Dan E. Arking, Joel S. Bader
2024 J jnl
Prioritizing drug targets by perturbing biological network response functions.
PLoS Comput. Biol.
Matthew C. Perrone, Michael G. Lerner, Matthew Dunworth, Andrew J. Ewald, Joel S. Bader
2023 J jnl
Priors, population sizes, and power in genome-wide hypothesis tests.
BMC Bioinform.
Jitong Cai, Jianan Zhan, Dan E. Arking, Joel S. Bader
2020 J jnl
Between-tumor and within-tumor heterogeneity in invasive potential.
PLoS Comput. Biol.
Veena Padmanaban, Yohannes Tsehay, Kevin J. Cheung, Andrew J. Ewald, Joel S. Bader
2020 J jnl
OrgDyn: feature- and model-based characterization of spatial and temporal organoid dynamics.
Bioinform.
Zaki Hasnain, Andrew K. Fraser, Dan Georgess, Alex Choi, Paul Macklin, Joel S. Bader, Shelly R. Peyton, Andrew J. Ewald, Paul K. Newton
2016 J jnl
BioPartsBuilder: a synthetic biology tool for combinatorial assembly of biological parts.
Bioinform.
Kun Yang, Giovanni Stracquadanio, Jingchuan Luo, Jef D. Boeke, Joel S. Bader
2016 J jnl
BioPartsDB: a synthetic biology workflow web-application for education and research.
Bioinform.
Giovanni Stracquadanio, Kun Yang, Jef D. Boeke, Joel S. Bader
2013 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
Rachel Karchin, Michael F. Ochs, Joshua M. Stuart, Trey Ideker, Joel S. Bader
2012 J jnl
How networks change with time.
Bioinform.
Yongjin Park, Joel S. Bader
2012 A conf
Query-based Biclustering using Formal Concept Analysis.
SDM
Faris Alqadah, Joel S. Bader, Rajul Anand, Chandan K. Reddy
2012 Misc conf
Session Introduction.
Pacific Symposium on Biocomputing
Rachel Karchin, Michael F. Ochs, Joshua M. Stuart, Joel S. Bader
2011 J jnl
Resolving the structure of interactomes with hierarchical agglomerative clustering.
BMC Bioinform.
Yongjin Park, Joel S. Bader
2010 J jnl
NeMo: Network Module identification in Cytoscape.
BMC Bioinform.
Corban G. Rivera, Rachit Vakil, Joel S. Bader
2010 J jnl
Predicting functional associations from metabolism using bi-partite network algorithms.
BMC Syst. Biol.
Balaji Veeramani, Joel S. Bader
2009 J jnl
Analytical approximations for the amplitude and period of a relaxation oscillator.
BMC Syst. Biol.
Carmen Kut, Vahid Golkhou, Joel S. Bader
2009 — conf
Automated Design of Assemblable, Modular, Synthetic Chromosomes.
PPAM (2)
Sarah M. Richardson, Brian S. Olson, Jessica S. Dymond, Randal C. Burns, Srinivasan Chandrasegaran, Jef D. Boeke, Amarda Shehu, Joel S. Bader
2009 J jnl
Metabolic Flux Correlations, Genetic Interactions, and Disease.
J. Comput. Biol.
Balaji Veeramani, Joel S. Bader
2009 J jnl
Precision and recall estimates for two-hybrid screens.
Bioinform.
Hailiang Huang, Joel S. Bader
2007 Misc conf
Ab initio Prediction of Transcription Factor Binding Sites.
Pacific Symposium on Biocomputing
L. Angela Liu, Joel S. Bader
2007 J jnl
Where Have All the Interactions Gone? Estimating the Coverage of Two-Hybrid Protein Interaction Maps.
PLoS Comput. Biol.
Hailiang Huang, Bruno Jedynak, Joel S. Bader
2006 — conf
Probabilistic Paths for Protein Complex Inference.
Systems Biology and Computational Proteomics
Hailiang Huang, Lan V. Zhang, Frederick P. Roth, Joel S. Bader
2005 J jnl
Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast.
BMC Bioinform.
Ping Ye, Brian D. Peyser, Forrest A. Spencer, Joel S. Bader
2005 J jnl
Genetic interaction motif finding by expectation maximization - a novel statistical model for inferring gene modules from synthetic lethality.
BMC Bioinform.
Yan Qi, Ping Ye, Joel S. Bader
2004 J jnl
Probabilistic inference of molecular networks from noisy data sources.
Bioinform.
Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S. Bader, Kevin P. White, Andrey Rzhetsky
2003 J jnl
Greedily building protein networks with confidence.
Bioinform.
Joel S. Bader