Joel H. Saltz - RankMe

455 papers A* 13A 57B 23C 11Misc 46Journal 179Unranked 123

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Label-Efficient Deep Color Deconvolution of Brightfield Multiplex IHC Images. IEEE Trans. Medical Imaging Shahira Abousamra, Danielle Fassler, Rajarsi Gupta, Tahsin Kurc, Luisa F. Escobar-Hoyos, Dimitris Samaras, Kenneth R. Shroyer, Joel H. Saltz, Chao Chen
2026	J	`jnl`	Measuring and predicting where and when pathologists focus their visual attention while grading whole slide images of cancer. Medical Image Anal. Souradeep Chakraborty, Ruoyu Xue, Rajarsi Gupta, Oksana Yaskiv, Constantin Friedman, Natallia Sheuka, Dana Perez, Paul Friedman, Won-Tak Choi, Waqas Mahmud, Beatrice Knudsen, Gregory J. Zelinsky, Joel H. Saltz, Dimitris Samaras
2026	J	`jnl`	Position Paper: Artificial Intelligence in Medical Image Analysis: Advances, Clinical Translation, and Emerging Frontiers. IEEE J. Biomed. Health Informatics Andreas S. Panayides, Hao Chen, Nenad D. Filipovic, Tijana Geroski, Junlin Hou, Karim Lekadir, Kostas Marias, George K. Matsopoulos, Giorgos Papanastasiou, Pinaki Sarder, Georgia D. Tourassi, Sotirios A. Tsaftaris, Huazhu Fu, Efthyvoulos C. Kyriacou, Christos P. Loizou, Michalis E. Zervakis, Joel H. Saltz, Farah E. Shamout, Ken C. L. Wong, Jianhua Yao, Amir A. Amini, Dimitrios I. Fotiadis, Constantinos S. Pattichis, Marios S. Pattichis
2026	J	`jnl`	Towards interpretable prediction of recurrence risk in breast cancer using pathology foundation models. npj Digit. Medicine Jakub R. Kaczmarzyk, Sarah C. Van Alsten, Alyssa J. Cozzo, Rajarsi Gupta, Peter K. Koo, Melissa A. Troester, Katherine A. Hoadley, Joel H. Saltz
2025	J	`jnl`	CDG-MAE: Learning Correspondences from Diffusion Generated Views. CoRR Varun Belagali, Pierre Marza, Srikar Yellapragada, Zilinghan Li, Tarak Nath Nandi, Ravi K. Madduri, Joel H. Saltz, Stergios Christodoulidis, Maria Vakalopoulou, Dimitris Samaras
2025	J	`jnl`	GECKO: Gigapixel Vision-Concept Contrastive Pretraining in Histopathology. CoRR Saarthak Kapse, Pushpak Pati, Srikar Yellapragada, Srijan Das, Rajarsi R. Gupta, Joel H. Saltz, Dimitris Samaras, Prateek Prasanna
2025	J	`jnl`	National COVID Cohort Collaborative data enhancements: a path for expanding common data models. J. Am. Medical Informatics Assoc. Kellie M. Walters, Marshall Clark, Sofia Dard, Stephanie S. Hong, Elizabeth Kelly, Kristin Kostka, Adam M. Lee, Robert T. Miller, Michele Morris, Matvey B. Palchuk, Emily R. Pfaff, Adam B. Wilcox, Alexis Graves, Alfred (Jerrod) Anzalone, Amin Manna, Amit Saha, Amy Olex, Andrea Zhou, Andrew E. Williams, Andrew Southerland, Andrew T. Girvin, Anita Walden, Anjali A Sharathkumar, Benjamin R. C. Amor, Benjamin Bates, Brian Hendricks, Brijesh Patel, Caleb Alexander, Carolyn T. Bramante, Cavin Ward-Caviness, Charisse R. Madlock-Brown, Christine Suver, Christopher G. Chute, Christopher Dillon, Chunlei Wu, Clare Schmitt, Cliff Takemoto, Dan Housman, Davera Gabriel, David A. Eichmann, Diego Mazzotti, Don Brown, Eilis Boudreau, Elaine L. Hill, Elizabeth Zampino, Emily Carlson Marti, Evan French, Farrukh M. Koraishy, Federico Mariona, Fred W. Prior, George Sokos, Greg Martin, Harold P. Lehmann, Heidi Spratt, Hemalkumar Mehta, Hongfang Liu, Hythem Sidky, J. W. Awori Hayanga, Jami Pincavitch, Jaylyn Clark, Jeremy Richard Harper, Jessica Islam, Jin Ge, Joel Gagnier, Joel H. Saltz, Johanna Loomba, John Buse, Jomol P. Mathew, Joni L. Rutter, Julie A. McMurry, Justin Guinney, Justin Starren, Karen Crowley, Katie Rebecca Bradwell, Ken Wilkins, Kenneth R. Gersing, Kenrick Dwain Cato, Kimberly Murray, Lavance Northington, Lee Allan Pyles, Leonie Misquitta, Lesley Cottrell, Lili M. Portilla, Mariam Deacy, Mark M. Bissell, Mary Emmett, Mary Morrison Saltz, Melissa A. Haendel, Meredith C. B. Adams, Meredith Temple-O'Connor, Michael G. Kurilla, Nabeel Qureshi, Nasia Safdar, Nicole Garbarini, Noha Sharafeldin, Ofer Sadan, Patricia A. Francis, Penny Wung Burgoon, Peter N. Robinson, Philip R. O. Payne, Rafael Fuentes, Randeep Jawa, Rebecca Erwin-Cohen, Rena Patel, Richard A. Moffitt, Richard L. Zhu, Rishi Kamaleswaran, Robert Hurley, Saiju Pyarajan, Sam G. Michael, Samuel Bozzette, Sandeep Mallipattu, Satyanarayana Vedula, Scott Chapman, Shawn T. O'Neil, Soko Setoguchi, Steve Johnson, Tellen D. Bennett, Tiffany Callahan, Umit Topaloglu, Usman Sheikh, Valery Gordon, Vignesh Subbian, Warren A. Kibbe, Wenndy Hernandez, Will Beasley, Will Cooper, William Hillegass, Xiaohan Tanner Zhang
2025	—	`conf`	Pathology Image Compression with Pre-trained Autoencoders. MICCAI (2) Srikar Yellapragada, Alexandros Graikos, Kostas Triaridis, Zilinghan Li, Tarak Nath Nandi, Ravi K. Madduri, Prateek Prasanna, Joel H. Saltz, Dimitris Samaras
2025	J	`jnl`	Pathology Image Compression with Pre-trained Autoencoders. CoRR Srikar Yellapragada, Alexandros Graikos, Kostas Triaridis, Zilinghan Li, Tarak Nath Nandi, Ravi K. Madduri, Prateek Prasanna, Joel H. Saltz, Dimitris Samaras
2025	J	`jnl`	PixCell: A generative foundation model for digital histopathology images. CoRR Srikar Yellapragada, Alexandros Graikos, Zilinghan Li, Kostas Triaridis, Varun Belagali, Saarthak Kapse, Tarak Nath Nandi, Ravi K. Madduri, Prateek Prasanna, Tahsin M. Kurç, Rajarsi R. Gupta, Joel H. Saltz, Dimitris Samaras
2025	J	`jnl`	Reusable specimen-level inference in computational pathology. CoRR Jakub R. Kaczmarzyk, Rishul Sharma, Peter K. Koo, Joel H. Saltz
2025	J	`jnl`	TICON: A Slide-Level Tile Contextualizer for Histopathology Representation Learning. CoRR Varun Belagali, Saarthak Kapse, Pierre Marza, Srijan Das, Zilinghan Li, Sofiène Boutaj, Pushpak Pati, Srikar Yellapragada, Tarak Nath Nandi, Ravi K. Madduri, Joel H. Saltz, Prateek Prasanna, Stergios Christodoulidis, Maria Vakalopoulou, Dimitris Samaras
2025	A*	`conf`	ZoomLDM: Latent Diffusion Model for Multi-scale Image Generation. CVPR Srikar Yellapragada, Alexandros Graikos, Kostas Triaridis, Prateek Prasanna, Rajarsi Gupta, Joel H. Saltz, Dimitris Samaras
2024	J	`jnl`	Attention De-sparsification Matters: Inducing diversity in digital pathology representation learning. Medical Image Anal. Saarthak Kapse, Srijan Das, Jingwei Zhang, Rajarsi R. Gupta, Joel H. Saltz, Dimitris Samaras, Prateek Prasanna
2024	—	`conf`	Decoding the Visual Attention of Pathologists to Reveal Their Level of Expertise. MICCAI (3) Souradeep Chakraborty, Rajarsi Gupta, Oksana Yaskiv, Constantin Friedman, Natallia Sheuka, Dana Perez, Paul Friedman, Gregory J. Zelinsky, Joel H. Saltz, Dimitris Samaras
2024	J	`jnl`	Decoding the visual attention of pathologists to reveal their level of expertise. CoRR Souradeep Chakraborty, Dana Perez, Paul Friedman, Natallia Sheuka, Constantin Friedman, Oksana Yaskiv, Rajarsi Gupta, Gregory J. Zelinsky, Joel H. Saltz, Dimitris Samaras
2024	J	`jnl`	Gen-SIS: Generative Self-augmentation Improves Self-supervised Learning. CoRR Varun Belagali, Srikar Yellapragada, Alexandros Graikos, Saarthak Kapse, Zilinghan Li, Tarak Nath Nandi, Ravi K. Madduri, Prateek Prasanna, Joel H. Saltz, Dimitris Samaras
2024	J	`jnl`	High-Performance Spatial Data Analytics: Systematic R&D for Scale-Out and Scale-Up Solutions from the Past to Now. Proc. VLDB Endow. Fusheng Wang, Rubao Lee, Dejun Teng, Xiaodong Zhang, Joel H. Saltz
2024	A*	`conf`	Learned Representation-Guided Diffusion Models for Large-Image Generation. CVPR Alexandros Graikos, Srikar Yellapragada, Minh-Quan Le, Saarthak Kapse, Prateek Prasanna, Joel H. Saltz, Dimitris Samaras
2024	—	`conf`	New Spatial Phenotypes from Imaging Uncover Survival Differences for Breast Cancer Patients. BCB Mahmudul Hasan, Ariadna Kim Silva, Shahira Abousamra, Shao-Jun Tang, Prateek Prasanna, Joel H. Saltz, Kevin Gardner, Chao Chen, Alisa Yurovsky
2024	B	`conf`	Pan-Cancer Tumor Infiltrating Lymphocyte Detection based on Federated Learning. IEEE Big Data Ujjwal Baid, Sarthak Pati, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Shahira Abousamra, Siddhesh P. Thakur, Joel H. Saltz, Spyridon Bakas
2024	A	`conf`	PathLDM: Text conditioned Latent Diffusion Model for Histopathology. WACV Srikar Yellapragada, Alexandros Graikos, Prateek Prasanna, Tahsin M. Kurç, Joel H. Saltz, Dimitris Samaras
2024	J	`jnl`	RankByGene: Gene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency. CoRR Wentao Huang, Meilong Xu, Xiaoling Hu, Shahira Abousamra, Aniruddha Ganguly, Saarthak Kapse, Alisa Yurovsky, Prateek Prasanna, Tahsin M. Kurç, Joel H. Saltz, Michael L. Miller, Chao Chen
2024	A*	`conf`	SI-MIL: Taming Deep MIL for Self-Interpretability in Gigapixel Histopathology. CVPR Saarthak Kapse, Pushpak Pati, Srijan Das, Jingwei Zhang, Chao Chen, Maria Vakalopoulou, Joel H. Saltz, Dimitris Samaras, Rajarsi R. Gupta, Prateek Prasanna
2024	J	`jnl`	Semi-Supervised Contrastive VAE for Disentanglement of Digital Pathology Images. CoRR Mahmudul Hasan, Xiaoling Hu, Shahira Abousamra, Prateek Prasanna, Joel H. Saltz, Chao Chen
2024	—	`conf`	Semi-supervised Contrastive VAE for Disentanglement of Digital Pathology Images. MICCAI (4) Mahmudul Hasan, Xiaoling Hu, Shahira Abousamra, Prateek Prasanna, Joel H. Saltz, Chao Chen
2024	—	`conf`	Uncertainty Estimation for Tumor Prediction with Unlabeled Data. CVPR Workshops Juyoung Yun, Shahira Abousamra, Chen Li, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Alison L. Van Dyke, Joel H. Saltz, Chao Chen
2024	J	`jnl`	ZoomLDM: Latent Diffusion Model for multi-scale image generation. CoRR Srikar Yellapragada, Alexandros Graikos, Kostas Triaridis, Prateek Prasanna, Rajarsi R. Gupta, Joel H. Saltz, Dimitris Samaras
2024	—	`conf`	∞-Brush: Controllable Large Image Synthesis with Diffusion Models in Infinite Dimensions. ECCV (32) Minh-Quan Le, Alexandros Graikos, Srikar Yellapragada, Rajarsi Gupta, Joel H. Saltz, Dimitris Samaras
2024	J	`jnl`	∞-Brush: Controllable Large Image Synthesis with Diffusion Models in Infinite Dimensions. CoRR Minh-Quan Le, Alexandros Graikos, Srikar Yellapragada, Rajarsi Gupta, Joel H. Saltz, Dimitris Samaras
2023	J	`jnl`	An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. Sijia Liu, Andrew Wen, Liwei Wang, Huan He, Sunyang Fu, Robert T. Miller, Andrew E. Williams, Daniel R. Harris, Ramakanth Kavuluru, Mei Liu, Noor Abu-El-Rub, Dalton Schutte, Rui Zhang, Masoud Rouhizadeh, John D. Osborne, Yongqun He, Umit Topaloglu, Stephanie S. Hong, Joel H. Saltz, Thomas Schaffter, Emily R. Pfaff, Christopher G. Chute, Tim Duong, Melissa A. Haendel, Rafael Fuentes, Peter Szolovits, Hua Xu, Hongfang Liu
2023	J	`jnl`	Attention De-sparsification Matters: Inducing Diversity in Digital Pathology Representation Learning. CoRR Saarthak Kapse, Srijan Das, Jingwei Zhang, Rajarsi R. Gupta, Joel H. Saltz, Dimitris Samaras, Prateek Prasanna
2023	J	`jnl`	ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification. Comput. Methods Programs Biomed. Jakub R. Kaczmarzyk, Rajarsi Gupta, Tahsin M. Kurç, Shahira Abousamra, Joel H. Saltz, Peter K. Koo
2023	J	`jnl`	Effective and efficient active learning for deep learning-based tissue image analysis. Bioinform. André L. S. Meirelles, Tahsin M. Kurç, Jun Kong, Renato Ferreira, Joel H. Saltz, George Teodoro
2023	—	`conf`	Few Shot Hematopoietic Cell Classification. MIDL Vu Nguyen, Prantik Howlader, Le Hou, Dimitris Samaras, Rajarsi R. Gupta, Joel H. Saltz
2023	J	`jnl`	Halcyon - A Pathology Imaging and Feature analysis and Management System. CoRR Erich Bremer, Tammy DiPrima, Joseph Balsamo, Jonas S. Almeida, Rajarsi Gupta, Joel H. Saltz
2023	J	`jnl`	Learned representation-guided diffusion models for large-image generation. CoRR Alexandros Graikos, Srikar Yellapragada, Minh-Quan Le, Saarthak Kapse, Prateek Prasanna, Joel H. Saltz, Dimitris Samaras
2023	J	`jnl`	Open and reusable deep learning for pathology with WSInfer and QuPath. CoRR Jakub R. Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Peter Bankhead, Joel H. Saltz
2023	J	`jnl`	PathLDM: Text conditioned Latent Diffusion Model for Histopathology. CoRR Srikar Yellapragada, Alexandros Graikos, Prateek Prasanna, Tahsin M. Kurç, Joel H. Saltz, Dimitris Samaras
2023	—	`conf`	Precise Location Matching Improves Dense Contrastive Learning in Digital Pathology. IPMI Jingwei Zhang, Saarthak Kapse, Ke Ma, Prateek Prasanna, Maria Vakalopoulou, Joel H. Saltz, Dimitris Samaras
2023	J	`jnl`	Prompt-MIL: Boosting Multi-Instance Learning Schemes via Task-specific Prompt Tuning. CoRR Jingwei Zhang, Saarthak Kapse, Ke Ma, Prateek Prasanna, Joel H. Saltz, Maria Vakalopoulou, Dimitris Samaras
2023	—	`conf`	Prompt-MIL: Boosting Multi-instance Learning Schemes via Task-Specific Prompt Tuning. MICCAI (8) Jingwei Zhang, Saarthak Kapse, Ke Ma, Prateek Prasanna, Joel H. Saltz, Maria Vakalopoulou, Dimitris Samaras
2023	—	`conf`	SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology. ISIC/Care-AI/MedAGI/DeCaF@MICCAI Jingwei Zhang, Ke Ma, Saarthak Kapse, Joel H. Saltz, Maria Vakalopoulou, Prateek Prasanna, Dimitris Samaras
2023	J	`jnl`	SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology. CoRR Jingwei Zhang, Ke Ma, Saarthak Kapse, Joel H. Saltz, Maria Vakalopoulou, Prateek Prasanna, Dimitris Samaras
2023	J	`jnl`	SI-MIL: Taming Deep MIL for Self-Interpretability in Gigapixel Histopathology. CoRR Saarthak Kapse, Pushpak Pati, Srijan Das, Jingwei Zhang, Chao Chen, Maria Vakalopoulou, Joel H. Saltz, Dimitris Samaras, Rajarsi R. Gupta, Prateek Prasanna
2023	A*	`conf`	Topology-Guided Multi-Class Cell Context Generation for Digital Pathology. CVPR Shahira Abousamra, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen
2023	J	`jnl`	Topology-Guided Multi-Class Cell Context Generation for Digital Pathology. CoRR Shahira Abousamra, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen
2023	—	`conf`	Unsupervised Stain Decomposition via Inversion Regulation for Multiplex Immunohistochemistry Images. MIDL Shahira Abousamra, Danielle Fassler, Jiachen Yao, Rajarsi R. Gupta, Tahsin M. Kurç, Luisa F. Escobar-Hoyos, Dimitris Samaras, Kenneth Shroyer, Joel H. Saltz, Chao Chen
2022	J	`jnl`	A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment. CoRR Mahmudul Hasan, Jakub R. Kaczmarzyk, David Paredes, Lyanne Oblein, Jaymie Oentoro, Shahira Abousamra, Michael Horowitz, Dimitris Samaras, Chao Chen, Tahsin M. Kurç, Kenneth R. Shroyer, Joel H. Saltz
2022	J	`jnl`	AI and Pathology: Steering Treatment and Predicting Outcomes. CoRR Rajarsi Gupta, Jakub Kaczmarzyk, Soma Kobayashi, Tahsin M. Kurç, Joel H. Saltz
2022	J	`jnl`	Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). J. Am. Medical Informatics Assoc. Jason A. Thomas, Randi E. Foraker, Noa Zamstein, Jon D. Morrow, Philip R. O. Payne, Adam B. Wilcox, Melissa A. Haendel, Christopher G. Chute, Kenneth R. Gersing, Anita Walden, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Hongfang Liu, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Justin Starren, Christine Suver, Chunlei Wu, Davera Gabriel, Stephanie S. Hong, Kristin Kostka, Harold P. Lehmann, Richard A. Moffitt, Michele Morris, Matvey B. Palchuk, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Mark M. Bissell, Marshall Clark, Andrew T. Girvin, Adam M. Lee, Robert T. Miller, Kellie M. Walters, Yooree Chae, Connor Cook, Alexandra Dest, Racquel R. Dietz, Thomas Dillon, Patricia A. Francis, Rafael Fuentes, Alexis Graves, Andrew J. Neumann, Shawn T. O'Neil, Usman Sheikh, Andréa M. Volz, Elizabeth Zampino, Christopher P. Austin, Samuel Bozzette, Mariam Deacy, Nicole Garbarini, Michael G. Kurilla, Sam G. Michael, Joni L. Rutter, Meredith Temple-O'Connor, Katie Rebecca Bradwell, Amin Manna, Nabeel Qureshi, Mary Morrison Saltz, Julie A. McMurry, Carolyn T. Bramante, Jeremy Richard Harper, Wenndy Hernandez, Farrukh M. Koraishy, Federico Mariona, Saidulu Mattapally, Amit Saha, Satyanarayana Vedula, Yujuan Fu, Nisha Mathews, Ofer Mendelevitch
2022	J	`jnl`	Effective active learning in digital pathology: A case study in tumor infiltrating lymphocytes. Comput. Methods Programs Biomed. André L. S. Meirelles, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
2022	J	`jnl`	Efficient microscopy image analysis on CPU-GPU systems with cost-aware irregular data partitioning. J. Parallel Distributed Comput. Willian Barreiros Jr., Alba C. M. A. Melo, Jun Kong, Renato Ferreira, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
2022	J	`jnl`	Evaluating histopathology transfer learning with ChampKit. CoRR Jakub R. Kaczmarzyk, Tahsin M. Kurç, Shahira Abousamra, Rajarsi Gupta, Joel H. Saltz, Peter K. Koo
2022	J	`jnl`	Federated Learning for the Classification of Tumor Infiltrating Lymphocytes. CoRR Ujjwal Baid, Sarthak Pati, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Shahira Abousamra, Siddhesh P. Thakur, Joel H. Saltz, Spyridon Bakas
2022	—	`conf`	Gigapixel Whole-Slide Images Classification Using Locally Supervised Learning. MICCAI (2) Jingwei Zhang, Xin Zhang, Ke Ma, Rajarsi Gupta, Joel H. Saltz, Maria Vakalopoulou, Dimitris Samaras
2022	J	`jnl`	Gigapixel Whole-Slide Images Classification using Locally Supervised Learning. CoRR Jingwei Zhang, Xin Zhang, Ke Ma, Rajarsi Gupta, Joel H. Saltz, Maria Vakalopoulou, Dimitris Samaras
2022	J	`jnl`	Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset. J. Am. Medical Informatics Assoc. Katie R. Bradwell, Jacob T. Wooldridge, Benjamin R. C. Amor, Tellen D. Bennett, Adit Anand, Carolyn Bremer, Yun Jae Yoo, Zhenglong Qian, Steven G. Johnson, Emily R. Pfaff, Andrew T. Girvin, Amin Manna, Emily Niehaus, Stephanie S. Hong, Xiaohan Tanner Zhang, Richard L. Zhu, Mark Bissell, Nabeel Qureshi, Joel H. Saltz, Melissa A. Haendel, Christopher G. Chute, Harold P. Lehmann, Richard A. Moffitt
2022	J	`jnl`	ImageBox3: No-Server Tile Serving to Traverse Whole Slide Images on the Web. CoRR Praphulla M. S. Bhawsar, Erich Bremer, Máire A. Duggan, Stephen J. Chanock, Montserrat Garcia-Closas, Joel H. Saltz, Jonas S. Almeida
2022	—	`conf`	Learning Topological Interactions for Multi-Class Medical Image Segmentation. ECCV (29) Saumya Gupta, Xiaoling Hu, James Kaan, Michael Jin, Mutshipay Mpoy, Katherine Chung, Gagandeep Singh, Mary M. Saltz, Tahsin M. Kurç, Joel H. Saltz, Apostolos Tassiopoulos, Prateek Prasanna, Chao Chen
2022	J	`jnl`	Learning Topological Interactions for Multi-Class Medical Image Segmentation. CoRR Saumya Gupta, Xiaoling Hu, James Kaan, Michael Jin, Mutshipay Mpoy, Katherine Chung, Gagandeep Singh, Mary M. Saltz, Tahsin M. Kurç, Joel H. Saltz, Apostolos Tassiopoulos, Prateek Prasanna, Chao Chen
2022	J	`jnl`	Precise Location Matching Improves Dense Contrastive Learning in Digital Pathology. CoRR Jingwei Zhang, Saarthak Kapse, Ke Ma, Prateek Prasanna, Maria Vakalopoulou, Joel H. Saltz, Dimitris Samaras
2022	—	`conf`	Predicting the Visual Attention of Pathologists Evaluating Whole Slide Images of Cancer. MOVI@MICCAI Souradeep Chakraborty, Rajarsi Gupta, Ke Ma, Darshana Govind, Pinaki Sarder, Won-Tak Choi, Waqas Mahmud, Eric Yee, Felicia Allard, Beatrice Knudsen, Gregory J. Zelinsky, Joel H. Saltz, Dimitris Samaras
2022	—	`conf`	Visual Attention Analysis Of Pathologists Examining Whole Slide Images Of Prostate Cancer. ISBI Souradeep Chakraborty, Ke Ma, Rajarsi Gupta, Beatrice Knudsen, Gregory J. Zelinsky, Joel H. Saltz, Dimitris Samaras
2022	J	`jnl`	Visual attention analysis of pathologists examining whole slide images of Prostate cancer. CoRR Souradeep Chakraborty, Ke Ma, Rajarsi Gupta, Beatrice Knudsen, Gregory J. Zelinsky, Joel H. Saltz, Dimitris Samaras
2021	—	`conf`	A Joint Spatial and Magnification Based Attention Framework for Large Scale Histopathology Classification. CVPR Workshops Jingwei Zhang, Ke Ma, John S. Van Arnam, Rajarsi Gupta, Joel H. Saltz, Maria Vakalopoulou, Dimitris Samaras
2021	J	`jnl`	Building robust pathology image analyses with uncertainty quantification. Comput. Methods Programs Biomed. Jeremias M. Gomes, Jun Kong, Tahsin M. Kurç, Alba C. M. A. Melo, Renato Ferreira, Joel H. Saltz, George Teodoro
2021	Misc	`conf`	Generating Longitudinal Synthetic EHR Data with Recurrent Autoencoders and Generative Adversarial Networks. AMIA Siao Sun, Fusheng Wang, Sina Rashidian, Tahsin M. Kurç, Kayley Abell-Hart, Janos G. Hajagos, Wei Zhu, Mary M. Saltz, Joel H. Saltz
2021	—	`conf`	Generating Longitudinal Synthetic EHR Data with Recurrent Autoencoders and Generative Adversarial Networks. Poly/DMAH@VLDB Siao Sun, Fusheng Wang, Sina Rashidian, Tahsin M. Kurç, Kayley Abell-Hart, Janos G. Hajagos, Wei Zhu, Mary M. Saltz, Joel H. Saltz
2021	J	`jnl`	Identifying risk of opioid use disorder for patients taking opioid medications with deep learning. J. Am. Medical Informatics Assoc. Xinyu Dong, Jianyuan Deng, Sina Rashidian, Kayley Abell-Hart, Wei Hou, Richard N. Rosenthal, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
2021	Misc	`conf`	Informatics to Power Post-COVID Care: A Framework for Patient Care and Secondary Data Use. AMIA Sritha Rajupet, Rachel Wong, Donna Moller, Lisa Maldonado, Tricia Weiss, Tahsin M. Kurç, Janos G. Hajagos, Hasit Shah, Mary M. Saltz, Joel H. Saltz, Veena Lingam
2021	A*	`conf`	Multi-Class Cell Detection Using Spatial Context Representation. ICCV Shahira Abousamra, David Belinsky, John S. Van Arnam, Felicia Allard, Eric Yee, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen
2021	J	`jnl`	Multi-Class Cell Detection Using Spatial Context Representation. CoRR Shahira Abousamra, David Belinsky, John S. Van Arnam, Felicia Allard, Eric Yee, Rajarsi Gupta, Tahsin M. Kurç, Dimitris Samaras, Joel H. Saltz, Chao Chen
2021	—	`conf`	Predicting COVID-19 Lung Infiltrate Progression on Chest Radiographs Using Spatio-temporal LSTM based Encoder-Decoder Network. MIDL Aishik Konwer, Joseph Bae, Gagandeep Singh, Rishabh Gattu, Syed Ali, Jeremy Green, Tej Phatak, Amit Gupta, Chao Chen, Joel H. Saltz, Prateek Prasanna
2021	J	`jnl`	Predicting opioid overdose risk of patients with opioid prescriptions using electronic health records based on temporal deep learning. J. Biomed. Informatics Xinyu Dong, Jianyuan Deng, Wei Hou, Sina Rashidian, Richard N. Rosenthal, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
2021	J	`jnl`	The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. J. Am. Medical Informatics Assoc. Melissa A. Haendel, Christopher G. Chute, Tellen D. Bennett, David A. Eichmann, Justin Guinney, Warren A. Kibbe, Philip R. O. Payne, Emily R. Pfaff, Peter N. Robinson, Joel H. Saltz, Heidi Spratt, Christine Suver, John Wilbanks, Adam B. Wilcox, Andrew E. Williams, Chunlei Wu, Clair Blacketer, Robert L. Bradford, James J. Cimino, Marshall Clark, Evan W. Colmenares, Patricia A. Francis, Davera Gabriel, Alexis Graves, Raju Hemadri, Stephanie S. Hong, George Hripcsak, Dazhi Jiao, Jeffrey G. Klann, Kristin Kostka, Adam M. Lee, Harold P. Lehmann, Lora Lingrey, Robert T. Miller, Michele Morris, Shawn N. Murphy, Karthik Natarajan, Matvey B. Palchuk, Usman Sheikh, Harold Solbrig, Shyam Visweswaran, Anita Walden, Kellie M. Walters, Griffin M. Weber, Xiaohan Tanner Zhang, Richard L. Zhu, Benjamin R. C. Amor, Andrew T. Girvin, Amin Manna, Nabeel Qureshi, Michael G. Kurilla, Sam G. Michael, Lili M. Portilla, Joni L. Rutter, Christopher P. Austin, Ken R. Gersing
2021	B	`conf`	Understanding and Leveraging the I/O Patterns of Emerging Machine Learning Analytics. SMC Ana Gainaru, Dmitry Ganyushin, Bing Xie, Tahsin M. Kurç, Joel H. Saltz, Sarp Oral, Norbert Podhorszki, Franz Poeschel, Axel Huebl, Scott Klasky
2020	J	`jnl`	AI in Medical Imaging Informatics: Current Challenges and Future Directions. IEEE J. Biomed. Health Informatics Andreas S. Panayides, Amir A. Amini, Nenad D. Filipovic, Ashish Sharma, Sotirios A. Tsaftaris, Alistair A. Young, David J. Foran, Nhan Do, Spyretta Golemati, Tahsin M. Kurç, Kun Huang, Konstantina S. Nikita, Ben P. Veasey, Michalis E. Zervakis, Joel H. Saltz, Constantinos S. Pattichis
2020	—	`conf`	Automated Assessment of the Curliness of Collagen Fiber in Breast Cancer. ECCV Workshops (1) David Paredes, Prateek Prasanna, Christina Preece, Rajarsi Gupta, Farzad Fereidouni, Dimitris Samaras, Tahsin M. Kurç, Richard M. Levenson, Patricia Thompson-Carino, Joel H. Saltz, Chao Chen
2020	J	`jnl`	Dataset of Segmented Nuclei in Hematoxylin and Eosin Stained Histopathology Images of 10 Cancer Types. CoRR Le Hou, Rajarsi Gupta, John S. Van Arnam, Yuwei Zhang, Kaustubh Sivalenka, Dimitris Samaras, Tahsin M. Kurç, Joel H. Saltz
2020	J	`jnl`	Identifying Risk of Opioid Use Disorder for Patients Taking Opioid Medications with Deep Learning. CoRR Xinyu Dong, Jianyuan Deng, Sina Rashidian, Kayley Abell-Hart, Wei Hou, Richard N. Rosenthal, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
2020	J	`jnl`	Optimizing parameter sensitivity analysis of large-scale microscopy image analysis workflows with multilevel computation reuse. Concurr. Comput. Pract. Exp. Willian Barreiros Jr., Jeremias Moreira, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro
2020	J	`jnl`	Representing Whole Slide Cancer Image Features with Hilbert Curves. CoRR Erich Bremer, Jonas S. Almeida, Joel H. Saltz
2020	B	`conf`	SMOOTH-GAN: Towards Sharp and Smooth Synthetic EHR Data Generation. AIME Sina Rashidian, Fusheng Wang, Richard A. Moffitt, Victor Garcia, Anurag Dutt, Wei Chang, Vishwam Pandya, Janos G. Hajagos, Mary M. Saltz, Joel H. Saltz
2020	—	`conf`	Weakly-Supervised Deep Stain Decomposition for Multiplex IHC Images. ISBI Shahira Abousamra, Danielle Fassler, Le Hou, Yuwei Zhang, Rajarsi Gupta, Tahsin M. Kurç, Luisa F. Escobar-Hoyos, Dimitris Samaras, Beatrice Knudson, Kenneth Shroyer, Joel H. Saltz, Chao Chen
2019	—	`conf`	Delivering Scalable Deep Learning to Research with Bridges-AI. CARLA Paola A. Buitrago, Nicholas A. Nystrom, Rajarsi Gupta, Joel H. Saltz
2019	—	`conf`	Exascale Deep Learning to Accelerate Cancer Research. IEEE BigData Robert M. Patton, Shahira Abousamra, Dimitris Samaras, Joel H. Saltz, J. Travis Johnston, Steven R. Young, Catherine D. Schuman, Thomas E. Potok, Derek C. Rose, Seung-Hwan Lim, Junghoon Chae, Le Hou
2019	J	`jnl`	Exascale Deep Learning to Accelerate Cancer Research. CoRR Robert M. Patton, J. Travis Johnston, Steven R. Young, Catherine D. Schuman, Thomas E. Potok, Derek C. Rose, Seung-Hwan Lim, Junghoon Chae, Le Hou, Shahira Abousamra, Dimitris Samaras, Joel H. Saltz
2019	—	`conf`	From Whole Slide Tissues to Knowledge: Mapping Sub-cellular Morphology of Cancer. BrainLes@MICCAI (2) Tahsin M. Kurç, Ashish Sharma, Rajarsi Gupta, Le Hou, Han Le, Shahira Abousamra, Erich Bremer, Ryan Birmingham, Tammy DiPrima, Nan Li, Feiqiao Wang, Joseph Balsamo, Whitney Bremer, Dimitris Samaras, Joel H. Saltz
2019	—	`conf`	Increasing Accuracy of Medical CNN Applying Optimization Algorithms: An Image Classification Case. BRACIS Rafael Marconi Ramos, Célia Ghedini Ralha, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
2019	J	`jnl`	Label Super Resolution with Inter-Instance Loss. CoRR Maozheng Zhao, Le Hou, Han Le, Dimitris Samaras, Nebojsa Jojic, Danielle Fassler, Tahsin M. Kurç, Rajarsi R. Gupta, Kolya Malkin, Shahira Abousamra, Kenneth Shroyer, Joel H. Saltz
2019	—	`conf`	Label super-resolution networks. ICLR (Poster) Kolya Malkin, Caleb Robinson, Le Hou, Rachel Soobitsky, Jacob Czawlytko, Dimitris Samaras, Joel H. Saltz, Lucas Joppa, Nebojsa Jojic
2019	J	`jnl`	Learning from Thresholds: Fully Automated Classification of Tumor Infiltrating Lymphocytes for Multiple Cancer Types. CoRR Shahira Abousamra, Le Hou, Rajarsi R. Gupta, Chao Chen, Dimitris Samaras, Tahsin M. Kurç, Rebecca Batiste, Tianhao Zhao, Kenneth Shroyer, Joel H. Saltz
2019	Misc	`conf`	Machine Learning Based Opioid Overdose Prediction Using Electronic Health Records. AMIA Xinyu Dong, Sina Rashidian, Yu Wang, Janos G. Hajagos, Xia Zhao, Richard N. Rosenthal, Jun Kong, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
2019	J	`jnl`	Multi-objective Parameter Auto-tuning for Tissue Image Segmentation Workflows. J. Digit. Imaging Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro
2019	—	`conf`	Pancreatic Cancer Detection in Whole Slide Images Using Noisy Label Annotations. MICCAI (1) Han Le, Dimitris Samaras, Tahsin M. Kurç, Rajarsi Gupta, Kenneth Shroyer, Joel H. Saltz
2019	A*	`conf`	Robust Histopathology Image Analysis: To Label or to Synthesize? CVPR Le Hou, Ayush Agarwal, Dimitris Samaras, Tahsin M. Kurç, Rajarsi R. Gupta, Joel H. Saltz
2019	J	`jnl`	Run-time Parameter Sensitivity Analysis Optimizations. CoRR Eduardo Scartezini, Willian Barreiros Jr., Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz, George Teodoro
2019	J	`jnl`	Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows. Comput. Biol. Medicine Jeremias M. Gomes, Willian Barreiros Jr., Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz, George Teodoro
2019	J	`jnl`	Sparse autoencoder for unsupervised nucleus detection and representation in histopathology images. Pattern Recognit. Le Hou, Vu Nguyen, Ariel B. Kanevsky, Dimitris Samaras, Tahsin M. Kurç, Tianhao Zhao, Rajarsi R. Gupta, Yi Gao, Wenjin Chen, David J. Foran, Joel H. Saltz
2019	J	`jnl`	Utilizing Automated Breast Cancer Detection to Identify Spatial Distributions of Tumor Infiltrating Lymphocytes in Invasive Breast Cancer. CoRR Han Le, Rajarsi R. Gupta, Le Hou, Shahira Abousamra, Danielle Fassler, Tahsin M. Kurç, Dimitris Samaras, Rebecca Batiste, Tianhao Zhao, Alison L. Van Dyke, Ashish Sharma, Erich Bremer, Jonas S. Almeida, Joel H. Saltz
2018	J	`jnl`	Big data and extreme-scale computing. Int. J. High Perform. Comput. Appl. Mark Asch, Terry Moore, Rosa M. Badia, Micah D. Beck, Peter H. Beckman, T. Bidot, François Bodin, Franck Cappello, Alok N. Choudhary, Bronis R. de Supinski, Ewa Deelman, Jack J. Dongarra, Anshu Dubey, Geoffrey C. Fox, H. Fu, Sergi Girona, William Gropp, Michael A. Heroux, Yutaka Ishikawa, Katarzyna Keahey, David E. Keyes, Bill Kramer, J.-F. Lavignon, Y. Lu, Satoshi Matsuoka, Bernd Mohr, Daniel A. Reed, S. Requena, Joel H. Saltz, Thomas C. Schulthess, Rick L. Stevens, D. Martin Swany, Alexander S. Szalay, William M. Tang, Gaël Varoquaux, Jean-Pierre Vilotte, Robert W. Wisniewski, Z. Xu, Igor Zacharov
2018	J	`jnl`	Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel® Xeon Phi™. Concurr. Comput. Pract. Exp. Jeremias M. Gomes, Alba Cristina Magalhaes Alves de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz, George Teodoro
2018	J	`jnl`	Disease phenotyping using deep learning: A diabetes case study. CoRR Sina Rashidian, Janos G. Hajagos, Richard A. Moffitt, Fusheng Wang, Xinyu Dong, Kayley Abell-Hart, Kimberly Noel, Rajarsi R. Gupta, Mathew Tharakan, Veena Lingam, Joel H. Saltz, Mary M. Saltz
2018	J	`jnl`	Methods for Segmentation and Classification of Digital Microscopy Tissue Images. CoRR Quoc Dang Vu, Simon Graham, Minh Nguyen Nhat To, Muhammad Shaban, Talha Qaiser, Navid Alemi Koohbanani, Syed Ali Khurram, Tahsin M. Kurç, Keyvan Farahani, Tianhao Zhao, Rajarsi R. Gupta, Jin Tae Kwak, Nasir M. Rajpoot, Joel H. Saltz
2018	Misc	`conf`	Social Media Based Analysis of Opioid Epidemic Using Reddit. AMIA Sheetal Pandrekar Mangesh, Xin Chen, Gaurav Gopalkrishna, Avi Srivastava, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
2018	Misc	`conf`	Systems Demonstration: Towards a Services Oriented Platform for Combined Radiology-Pathology Image Analysis and Interpretation. AMIA Tahsin M. Kurç, Joel H. Saltz, Fred W. Prior, Ashish Sharma
2018	J	`jnl`	Tuning for Tissue Image Segmentation Workflows for Accuracy and Performance. CoRR Luis F. R. Taveira, Tahsin M. Kurç, Alba C. M. A. Melo, Jun Kong, Erich Bremer, Joel H. Saltz, George Teodoro
2017	Misc	`conf`	20 Years of Digital Pathology - An Overview of the Road Travelled and What is on the Horizon. AMIA Joel H. Saltz, Ashish Sharma, Alexis B. Carter, Liron Pantanowitz, Tahsin M. Kurç
2017	J	`jnl`	Application performance analysis and efficient execution on systems with multi-core CPUs, GPUs and MICs: a case study with microscopy image analysis. Int. J. High Perform. Comput. Appl. George Teodoro, Tahsin M. Kurç, Guilherme Andrade, Jun Kong, Renato Ferreira, Joel H. Saltz
2017	A	`conf`	Center-Focusing Multi-task CNN with Injected Features for Classification of Glioma Nuclear Images. WACV Veda Murthy, Le Hou, Dimitris Samaras, Tahsin M. Kurç, Joel H. Saltz
2017	—	`conf`	Classification of Pancreatic Cysts in Computed Tomography Images Using a Random Forest and Convolutional Neural Network Ensemble. MICCAI (3) Konstantin Dmitriev, Arie E. Kaufman, Ammar A. Javed, Ralph H. Hruban, Elliot K. Fishman, Anne Marie Lennon, Joel H. Saltz
2017	A	`conf`	ConvNets with Smooth Adaptive Activation Functions for Regression. AISTATS Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Joel H. Saltz
2017	—	`conf`	Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis. Digital Pathology Naiyun Zhou, Xiaxia Yu, Tianhao Zhao, Si Wen, Fusheng Wang, Wei Zhu, Tahsin M. Kurç, Allen R. Tannenbaum, Joel H. Saltz, Yi Gao
2017	Misc	`conf`	Large-scale Analysis of Opioid Poisoning Related Hospital Visits in New York State. AMIA Xin Chen, Yu Wang, Xiaxia Yu, Elinor Schoenfeld, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
2017	C	`conf`	Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems. CLUSTER Willian Barreiros, George Teodoro, Tahsin M. Kurç, Jun Kong, Alba C. M. A. Melo, Joel H. Saltz
2017	—	`conf`	SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing. SIGSPATIAL/GIS Furqan Baig, Hoang Vo, Tahsin M. Kurç, Joel H. Saltz, Fusheng Wang
2017	J	`jnl`	Sparse Autoencoder for Unsupervised Nucleus Detection and Representation in Histopathology Images. CoRR Le Hou, Vu Nguyen, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Tianhao Zhao, Joel H. Saltz
2017	—	`conf`	Spatio-temporal Analysis for New York State SPARCS Data. CRI Xin Chen, Yu Wang, Elinor Schoenfeld, Mary M. Saltz, Joel H. Saltz, Fusheng Wang
2017	J	`jnl`	Unsupervised Histopathology Image Synthesis. CoRR Le Hou, Ayush Agarwal, Dimitris Samaras, Tahsin M. Kurç, Rajarsi R. Gupta, Joel H. Saltz
2016	J	`jnl`	Center-Focusing Multi-task CNN with Injected Features for Classification of Glioma Nuclear Images. CoRR Veda Murthy, Le Hou, Dimitris Samaras, Tahsin M. Kurç, Joel H. Saltz
2016	J	`jnl`	Efficient Methods and Parallel Execution for Algorithm Sensitivity Analysis with Parameter Tuning on Microscopy Imaging Datasets. CoRR George Teodoro, Tahsin M. Kurç, Luis F. R. Taveira, Alba C. M. A. Melo, Jun Kong, Joel H. Saltz
2016	—	`conf`	Hierarchical nucleus segmentation in digital pathology images. Digital Pathology Yi Gao, Vadim Ratner, LiangJia Zhu, Tammy DiPrima, Tahsin M. Kurç, Allen R. Tannenbaum, Joel H. Saltz
2016	—	`conf`	Multi-scale learning based segmentation of glands in digital colonrectal pathology images. Digital Pathology Yi Gao, William Liu, Shipra Arjun, LiangJia Zhu, Vadim Ratner, Tahsin M. Kurç, Joel H. Saltz, Allen R. Tannenbaum
2016	J	`jnl`	Neural Networks with Smooth Adaptive Activation Functions for Regression. CoRR Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, Joel H. Saltz
2016	Misc	`conf`	POE: A Pathology Extraction Tool for Finding Attribute-Value Pairs in Glioma Pathology Reports. AMIA Veronica E. Lynn, Niranjan Balasubramanian, Tahsin M. Kurç, Joel H. Saltz, Rebecca Jacobson
2016	A*	`conf`	Patch-Based Convolutional Neural Network for Whole Slide Tissue Image Classification. CVPR Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, James E. Davis, Joel H. Saltz
2016	Misc	`conf`	S2CR3UM: A Solution to the In Silico Relevance, Reliability & Reproducibility Conundrum. AMIA Sarah B. Putney, Andrew White, Janos G. Hajagos, Joel H. Saltz, Jonas S. Almeida, Mary M. Saltz
2016	Misc	`conf`	Safe "cloudification" of large images through picker APIs. AMIA Erich Bremer, Tahsin M. Kurç, Yi Gao, Joel H. Saltz, Jonas S. Almeida
2015	C	`conf`	Efficient Irregular Wavefront Propagation Algorithms on Intel(R) Xeon Phi(TM). SBAC-PAD Jeremias M. Gomes, George Teodoro, Alba de Melo, Jun Kong, Tahsin M. Kurç, Joel H. Saltz
2015	J	`jnl`	Efficient Multiple Instance Convolutional Neural Networks for Gigapixel Resolution Image Classification. CoRR Le Hou, Dimitris Samaras, Tahsin M. Kurç, Yi Gao, James E. Davis, Joel H. Saltz
2015	Misc	`conf`	Integrative Informatics and Predictive Modeling Support for Population Health. AMIA Mary M. Saltz, Joel H. Saltz, Janos G. Hajagos, Andrew White, Charles Boicey, Jim Murry, Ivan Crnosija, Tahsin M. Kurç, Erich Bremer, Jonas S. Almeida
2015	—	`conf`	Maps of Human Disease: A Web-Based Framework for the Visualization of Human Disease Comorbidity and Clinical Profile Overlay. Big-O(Q)/DMAH@VLDB Naiyun Zhou, Joel H. Saltz, Klaus Mueller
2015	Misc	`conf`	OpenHealth Platform for Interactive Contextualization of Population Health Open Data. AMIA Jonas S. Almeida, Janos G. Hajagos, Ivan Crnosija, Tahsin M. Kurç, Mary M. Saltz, Joel H. Saltz
2015	J	`jnl`	Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs. CoRR George Teodoro, Tahsin M. Kurç, Guilherme Andrade, Jun Kong, Renato Ferreira, Joel H. Saltz
2015	J	`jnl`	Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies. BMC Bioinform. Tahsin M. Kurç, Xin Qi, Daihou Wang, Fusheng Wang, George Teodoro, Lee Cooper, Michael Nalisnik, Lin Yang, Joel H. Saltz, David J. Foran
2015	—	`conf`	SparkGIS: Efficient Comparison and Evaluation of Algorithm Results in Tissue Image Analysis Studies. Big-O(Q)/DMAH@VLDB Furqan Baig, Mudit Mehrotra, Hoang Vo, Fusheng Wang, Joel H. Saltz, Tahsin M. Kurç
2014	J	`jnl`	Approximate similarity search for online multimedia services on distributed CPU-GPU platforms. VLDB J. George Teodoro, Eduardo Valle, Nathan Mariano, Ricardo da Silva Torres, Wagner Meira Jr., Joel H. Saltz
2014	A	`conf`	Comparative Performance Analysis of Intel (R) Xeon Phi (TM), GPU, and CPU: A Case Study from Microscopy Image Analysis. IPDPS George Teodoro, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz
2014	C	`conf`	Efficient Execution of Microscopy Image Analysis on CPU, GPU, and MIC Equipped Cluster Systems. SBAC-PAD Guilherme Andrade, Renato Ferreira, George Teodoro, Leonardo Rocha, Joel H. Saltz, Tahsin M. Kurç
2014	J	`jnl`	GlycoPattern: a web platform for glycan array mining. Bioinform. Sanjay Agravat, Joel H. Saltz, Richard D. Cummings, David F. Smith
2014	J	`jnl`	Parallel content-based sub-image retrieval using hierarchical searching. Bioinform. Lin Yang, Xin Qi, Fuyong Xing, Tahsin M. Kurç, Joel H. Saltz, David J. Foran
2014	J	`jnl`	Region Templates: Data Representation and Management for Large-Scale Image Analysis. CoRR George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Scott Klasky, Joel H. Saltz
2014	J	`jnl`	Region templates: Data representation and management for high-throughput image analysis. Parallel Comput. George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Scott Klasky, Joel H. Saltz
2013	Misc	`conf`	Clinical Phenotyping with the Analytic Information Warehouse. AMIA Andrew R. Post, Tahsin M. Kurç, Richie Willard, Himanshu Rathod, Michel Mansour, Akshatha Kalsanka Pai, William M. Torian, Sanjay Agravat, Suzanne Sturm, Joel H. Saltz
2013	J	`jnl`	Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU. CoRR George Teodoro, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz
2013	—	`conf`	Demonstration of Hadoop-GIS: a spatial data warehousing system over MapReduce. SIGSPATIAL/GIS Ablimit Aji, Xiling Sun, Hoang Vo, Qiaoling Liu, Rubao Lee, Xiaodong Zhang, Joel H. Saltz, Fusheng Wang
2013	J	`jnl`	Efficient irregular wavefront propagation algorithms on hybrid CPU-GPU machines. Parallel Comput. George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz
2013	J	`jnl`	Feature-based analysis of large-scale spatio-temporal sensor data on hybrid architectures. Int. J. High Perform. Comput. Appl. Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, Scott Klasky, Tahsin M. Kurç
2013	J	`jnl`	Hadoop-GIS: A High Performance Spatial Data Warehousing System over MapReduce. Proc. VLDB Endow. Ablimit Aji, Fusheng Wang, Hoang Vo, Rubao Lee, Qiaoling Liu, Xiaodong Zhang, Joel H. Saltz
2013	—	`conf`	High-performance computational analysis of glioblastoma pathology images with database support identifies molecular and survival correlates. BIBM Jun Kong, Fusheng Wang, George Teodoro, Lee Cooper, Carlos Sanchez Moreno, Tahsin M. Kurç, Tony Pan, Joel H. Saltz, Daniel J. Brat
2013	A	`conf`	High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms. IPDPS George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Norbert Podhorszki, Scott Klasky, Joel H. Saltz
2013	J	`jnl`	Research and applications: Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data. J. Am. Medical Informatics Assoc. David A. Gutman, Jake Cobb, Dhananjaya Somanna, Yuna Park, Fusheng Wang, Tahsin M. Kurç, Joel H. Saltz, Daniel J. Brat, Lee A. D. Cooper
2013	J	`jnl`	Scalable Locality-Sensitive Hashing for Similarity Search in High-Dimensional, Large-Scale Multimedia Datasets. CoRR Thiago S. F. X. Teixeira, George Teodoro, Eduardo Valle, Joel H. Saltz
2013	J	`jnl`	Semantically Interoperable XML Data. Int. J. Semantic Comput. Cristobal Vergara-Niedermayr, Fusheng Wang, Tony Pan, Tahsin M. Kurç, Joel H. Saltz
2013	Misc	`conf`	Temporal Abstraction-based Clinical Phenotyping with Eureka! AMIA Andrew R. Post, Tahsin M. Kurç, Richie Willard, Himanshu Rathod, Michel Mansour, Akshatha Kalsanka Pai, William M. Torian, Sanjay Agravat, Suzanne Sturm, Joel H. Saltz
2013	J	`jnl`	The Analytic Information Warehouse (AIW): A platform for analytics using electronic health record data. J. Biomed. Informatics Andrew R. Post, Tahsin M. Kurç, Sharath R. Cholleti, Jingjing Gao, Xia Lin, William Bornstein, Dedra Cantrell, David Levine, Sam Hohmann, Joel H. Saltz
2012	Misc	`conf`	A Pipeline Supporting Efficient and Flexible Analytics Using Longitudinal and High-dimensional Extracts from Clinical Databases. AMIA Jingjing Gao, Andrew R. Post, Sharath R. Cholleti, Himanshu Rathod, William Bornstein, Dedra Cantrell, Joel H. Saltz
2012	A	`conf`	Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems. IPDPS George Teodoro, Tahsin M. Kurç, Tony Pan, Lee A. D. Cooper, Jun Kong, Patrick M. Widener, Joel H. Saltz
2012	J	`jnl`	Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems CoRR Kaibo Wang, Yin Huai, Rubao Lee, Fusheng Wang, Xiaodong Zhang, Joel H. Saltz
2012	J	`jnl`	Accelerating Pathology Image Data Cross-Comparison on CPU-GPU Hybrid Systems. Proc. VLDB Endow. Kaibo Wang, Yin Huai, Rubao Lee, Fusheng Wang, Xiaodong Zhang, Joel H. Saltz
2012	J	`jnl`	Approximate Similarity Search for Online Multimedia Services on Distributed CPU-GPU Platforms CoRR George Teodoro, Eduardo Valle, Nathan Mariano, Ricardo da Silva Torres, Wagner Meira Jr., Joel H. Saltz
2012	J	`jnl`	Digital Pathology: Data-Intensive Frontier in Medical Imaging. Proc. IEEE Lee A. D. Cooper, Alexis B. Carter, Alton B. Farris, Fusheng Wang, Jun Kong, David A. Gutman, Patrick M. Widener, Tony C. Pan, Sharath R. Cholleti, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
2012	J	`jnl`	Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines CoRR George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee Cooper, Joel H. Saltz
2012	A	`conf`	Efficient regression testing of ontology-driven systems. ISSTA Mijung Kim, Jake Cobb, Mary Jean Harrold, Tahsin M. Kurç, Alessandro Orso, Joel H. Saltz, Andrew R. Post, Kunal Malhotra, Shamkant B. Navathe
2012	A	`conf`	Enabling ontology based semantic queries in biomedical database systems. CIKM Shuai Zheng, Fusheng Wang, James J. Lu, Joel H. Saltz
2012	Misc	`conf`	High Performance Computing for Integrative Analysis of Large Pathology Image Datasets. AMIA Tahsin M. Kurç, Joel H. Saltz, George Teodoro, Tony Pan, Lee A. D. Cooper, Jun Kong, David A. Gutman, Daniel J. Brat, Fusheng Wang
2012	J	`jnl`	High-throughput Execution of Hierarchical Analysis Pipelines on Hybrid Cluster Platforms CoRR George Teodoro, Tony Pan, Tahsin M. Kurç, Jun Kong, Lee A. D. Cooper, Joel H. Saltz
2012	J	`jnl`	Integrated morphologic analysis for the identification and characterization of disease subtypes. J. Am. Medical Informatics Assoc. Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Jingjing Gao, Christina Appin, Sharath R. Cholleti, Tony Pan, Ashish Sharma, Lisa Scarpace, Tom Mikkelsen, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz
2012	Misc	`conf`	Leveraging Derived Data Elements in Data Analytic Models for Understanding and Predicting Hospital Readmissions. AMIA Sharath R. Cholleti, Andrew R. Post, Jingjing Gao, Xia Lin, William Bornstein, Dedra Cantrell, Joel H. Saltz
2012	Misc	`conf`	Systematic Modeling, Testing, and Monitoring of Information Integrity in Federated Ontology-driven Data Sources. AMIA Mijung Kim, Jake Cobb, Tahsin M. Kurç, Alessandro Orso, Mary Jean Harrold, Andrew R. Post, Shamkant B. Navathe, Joel H. Saltz
2012	—	`conf`	Towards building a high performance spatial query system for large scale medical imaging data. SIGSPATIAL/GIS Ablimit Aji, Fusheng Wang, Joel H. Saltz
2012	—	`conf`	ZPEG: A hybrid DPCM-DCT based approach for compression of Z-stack images. EMBC Sourabh Khire, Lee Cooper, Yuna Park, Alexis B. Carter, Nikil Jayant, Joel H. Saltz
2011	—	`conf`	A comprehensive framework for classification of nuclei in digital microscopy imaging: An application to diffuse gliomas. ISBI Jun Kong, Lee Cooper, Fusheng Wang, Candace Chisolm, Carlos Sanchez Moreno, Tahsin M. Kurç, Patrick M. Widener, Daniel J. Brat, Joel H. Saltz
2011	B	`conf`	A new steerable pressure force for parametric deformable models. Image Processing Jun Kong, Lee Cooper, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
2011	—	`conf`	Acceleration of Two Point Correlation Function Calculation for Pathology Image Segmentation. HISB Lee A. D. Cooper, Joel H. Saltz, Ümit V. Çatalyürek, Kun Huang
2011	—	`conf`	Computer-Based Image Analysis of Liver Steatosis with Large-Scale Microscopy Imagery and Correlation with Magnetic Resonance Imaging Lipid Analysis. BIBM Jun Kong, Michael J. Lee, Pelin Bagci, Puneet Sharma, Diego R. Martín, N. Volkan Adsay, Joel H. Saltz, Alton B. Farris
2011	—	`conf`	Detection of Conflicts and Inconsistencies in Taxonomy-Based Authorization Policies. BIBM Apurva Mohan, Douglas M. Blough, Tahsin M. Kurç, Andrew R. Post, Joel H. Saltz
2011	J	`jnl`	ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology. J. Am. Medical Informatics Assoc. David J. Foran, Lin Yang, Wenjin Chen, Jun Hu, Lauri A. Goodell, Michael Reiss, Fusheng Wang, Tahsin M. Kurç, Tony Pan, Ashish Sharma, Joel H. Saltz
2011	—	`conf`	In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response. EMBC Jun Kong, Lee Cooper, Carlos Sanchez Moreno, Fusheng Wang, Tahsin M. Kurç, Joel H. Saltz, Daniel J. Brat
2011	J	`jnl`	Integrative, Multimodal Analysis of Glioblastoma Using TCGA Molecular Data, Pathology Images, and Clinical Outcomes. IEEE Trans. Biomed. Eng. Jun Kong, Lee A. D. Cooper, Fusheng Wang, David A. Gutman, Jingjing Gao, Candace Chisolm, Ashish Sharma, Tony Pan, Erwin G. Van Meir, Tahsin M. Kurç, Carlos Sanchez Moreno, Joel H. Saltz, Daniel J. Brat
2011	—	`conf`	Morphological signatures and genomic correlates in glioblastoma. ISBI Lee A. D. Cooper, Jun Kong, Fusheng Wang, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz
2011	J	`jnl`	Optimizing latency and throughput of application workflows on clusters. Parallel Comput. Naga Vydyanathan, Ümit V. Çatalyürek, Tahsin M. Kurç, Ponnuswamy Sadayappan, Joel H. Saltz
2011	—	`ch.`	Run Time Parallelization. Encyclopedia of Parallel Computing Joel H. Saltz, Raja Das
2011	—	`conf`	Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma. EMBC Jun Kong, Lee Cooper, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
2010	J	`jnl`	An Integrative Approach for In Silico Glioma Research. IEEE Trans. Biomed. Eng. Lee A. D. Cooper, Jun Kong, David A. Gutman, Fusheng Wang, Sharath R. Cholleti, Tony C. Pan, Patrick M. Widener, Ashish Sharma, Tom Mikkelsen, Adam E. Flanders, Daniel L. Rubin, Erwin G. Van Meir, Tahsin M. Kurç, Carlos Sanchez Moreno, Daniel J. Brat, Joel H. Saltz
2010	—	`conf`	An evaluation of feature sets and sampling techniques for de-identification of medical records. IHI James J. Gardner, Li Xiong, Fusheng Wang, Andrew R. Post, Joel H. Saltz, Tyrone Grandison
2010	J	`jnl`	Exploring the performance of massively multithreaded architectures. Concurr. Comput. Pract. Exp. Shahid H. Bokhari, Joel H. Saltz
2010	—	`conf`	HIV-K: an Integrative Knowledge Base for Semantic Integration of AIDS-related Malignancy Data and Treatment Outcomes. HealthGrid Alfredo Tirado-Ramos, Joel H. Saltz, Mary Jo Lechowicz
2010	—	`conf`	High Performance Computing Techniques for Scaling Image Analysis Workflows. PARA (2) Patrick M. Widener, Tahsin M. Kurç, Wenjin Chen, Fusheng Wang, Lin Yang, Jun Hu, Vijay Kumar, Vicky Chu, Lee Cooper, Jun Kong, Ashish Sharma, Tony Pan, Joel H. Saltz, David J. Foran
2010	J	`jnl`	Parameterized specification, configuration and execution of data-intensive scientific workflows. Clust. Comput. Vijay S. Kumar, Tahsin M. Kurç, Varun Ratnakar, Jihie Kim, Gaurang Mehta, Karan Vahi, Yoon-Ju Lee Nelson, P. Sadayappan, Ewa Deelman, Yolanda Gil, Mary W. Hall, Joel H. Saltz
2010	J	`jnl`	Temporal Analysis of Tumor Heterogeneity and Volume for Cervical Cancer Treatment Outcome Prediction: Preliminary Evaluation. J. Digit. Imaging Jeffrey W. Prescott, Dongqing Zhang, Jian Z. Wang, Nina A. Mayr, William T. C. Yuh, Joel H. Saltz, Metin N. Gurcan
2010	Misc	`conf`	Texture based image recognition in microscopy images of diffuse gliomas with multi-class gentle boosting mechanism. ICASSP Jun Kong, Lee Cooper, Ashish Sharma, Tahsin M. Kurç, Daniel J. Brat, Joel H. Saltz
2010	—	`conf`	Two-point correlation as a feature for histology images: Feature space structure and correlation updating. CVPR Workshops Lee Cooper, Joel H. Saltz, Raghu Machiraju, Kun Huang
2009	J	`jnl`	A Knowledge-Anchored Integrative Image Search and Retrieval System. J. Digit. Imaging Selnur Erdal, Ümit V. Çatalyürek, Philip R. O. Payne, Joel H. Saltz, Jyoti Kamal, Metin N. Gurcan
2009	—	`conf`	A caGrid-Enabled, Learning Based Image Segmentation Method for Histopathology Specimens. ISBI David J. Foran, Lin Yang, Oncel Tuzel, Wenjin Chen, Jun Hu, Tahsin M. Kurç, Renato Ferreira, Joel H. Saltz
2009	J	`jnl`	An Integrated Approach to Locality-Conscious Processor Allocation and Scheduling of Mixed-Parallel Applications. IEEE Trans. Parallel Distributed Syst. Nagavijayalakshmi Vydyanathan, Sriram Krishnamoorthy, Gerald M. Sabin, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2009	A	`conf`	An integrated framework for performance-based optimization of scientific workflows. HPDC Vijay S. Kumar, P. Sadayappan, Gaurang Mehta, Karan Vahi, Ewa Deelman, Varun Ratnakar, Jihie Kim, Yolanda Gil, Mary W. Hall, Tahsin M. Kurç, Joel H. Saltz
2009	J	`jnl`	An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules. BMC Syst. Biol. Huaxia Qin, Michael W. Y. Chan, Sandya Liyanarachchi, Curtis Balch, Dustin P. Potter, Irene J. Souriraj, Alfred S. L. Cheng, Francisco J. Agosto-Perez, Elena Nikonova, Pearlly Yan, Huey-Jen Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri
2009	A	`conf`	Architectural implications for spatial object association algorithms. IPDPS Vijay S. Kumar, Tahsin M. Kurç, Joel H. Saltz, Ghaleb Abdulla, Scott R. Kohn, Celeste Matarazzo
2009	J	`jnl`	Computer-aided evaluation of neuroblastoma on whole-slide histology images: Classifying grade of neuroblastic differentiation. Pattern Recognit. Jun Kong, Olcay Sertel, Hiroyuki Shimada, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2009	J	`jnl`	Computer-aided prognosis of neuroblastoma on whole-slide images: Classification of stromal development. Pattern Recognit. Olcay Sertel, Jun Kong, Hiroyuki Shimada, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2009	J	`jnl`	HPC and Grid Computing for Integrative Biomedical Research. Int. J. High Perform. Comput. Appl. Tahsin M. Kurç, Shannon Hastings, Vijay S. Kumar, Stephen Langella, Ashish Sharma, Tony Pan, Scott Oster, David Ervin, Justin Permar, Sivaramakrishnan Narayanan, Yolanda Gil, Ewa Deelman, Mary W. Hall, Joel H. Saltz
2009	J	`jnl`	Histopathological Image Analysis Using Model-Based Intermediate Representations and Color Texture: Follicular Lymphoma Grading. J. Signal Process. Syst. Olcay Sertel, Jun Kong, Ümit V. Çatalyürek, Gerard Lozanski, Joel H. Saltz, Metin N. Gurcan
2009	Misc	`conf`	Parallel materialization of large ABoxes. SAC Sivaramakrishnan Narayanan, Ümit V. Çatalyürek, Tahsin M. Kurç, Joel H. Saltz
2009	J	`jnl`	Stroma classification for neuroblastoma on graphics processors. Int. J. Data Min. Bioinform. Antonio Ruiz, Olcay Sertel, Manuel Ujaldon, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2009	J	`jnl`	Tensor classification of N-point correlation function features for histology tissue segmentation. Medical Image Anal. Kishore Mosaliganti, Firdaus Janoos, M. Okan Irfanoglu, Randall Ridgway, Raghu Machiraju, Kun Huang, Joel H. Saltz, Gustavo Leone, Michael C. Ostrowski
2009	J	`jnl`	VirtualPACS - A Federating Gateway to Access Remote Image Data Resources over the Grid. J. Digit. Imaging Ashish Sharma, Tony Pan, Berkant Barla Cambazoglu, Metin N. Gurcan, Tahsin M. Kurç, Joel H. Saltz
2008	B	`conf`	A Duplication Based Algorithm for Optimizing Latency Under Throughput Constraints for Streaming Workflows. ICPP Nagavijayalakshmi Vydyanathan, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2008	—	`conf`	A Roadmap for caGrid, an Enterprise Grid Architecture for Biomedical Research. HealthGrid Joel H. Saltz, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Philip R. O. Payne, Renato Ferreira, Beth Plale, Carole A. Goble, David Ervin, Ashish Sharma, Tony Pan, Justin Permar, Peter Brezany, Frank Siebenlist, Ravi K. Madduri, Ian T. Foster, Krishnakant Shanbhag, Charlie Mead, Neil P. Chue Hong
2008	J	`jnl`	A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. Int. J. Parallel Program. George Teodoro, Tulio Tavares, Renato Ferreira, Tahsin M. Kurç, Wagner Meira Jr., Dorgival Olavo Guedes Neto, Tony Pan, Joel H. Saltz
2008	A	`conf`	A dynamic scheduling approach for coordinated wide-area data transfers using GridFTP. IPDPS Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, Rajkumar Kettimuthu, P. Sadayappan, Joel H. Saltz
2008	—	`conf`	A multi-resolution image analysis system for computer-assisted grading of neuroblastoma differentiation. Computer-Aided Diagnosis Jun Kong, Olcay Sertel, Hiroyuki Shimada, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2008	J	`jnl`	An imaging workflow for characterizing phenotypical change in large histological mouse model datasets. J. Biomed. Informatics Kishore Mosaliganti, Tony Pan, Randall Ridgway, Richard Sharp, Lee Cooper, Alex Gulacy, Ashish Sharma, M. Okan Irfanoglu, Raghu Machiraju, Tahsin M. Kurç, Alain de Bruin, Pamela Wenzel, Gustavo Leone, Joel H. Saltz, Kun Huang
2008	J	`jnl`	Analysis and Semantic Querying in Large Biomedical Image Datasets. Computer Vijay S. Kumar, Sivaramakrishnan Narayanan, Tahsin M. Kurç, Jun Kong, Metin N. Gurcan, Joel H. Saltz
2008	—	`conf`	Cancer treatment outcome prediction by assessing temporal change: application to cervical cancer. Computer-Aided Diagnosis Jeffrey W. Prescott, Dongqing Zhang, Jian Z. Wang, Nina A. Mayr, William T. C. Yuh, Joel H. Saltz, Metin N. Gurcan
2008	—	`conf`	Computer-aided prognosis of neuroblastoma: classification of stromal development on whole-slide images. Computer-Aided Diagnosis Olcay Sertel, Jun Kong, Hiroyuki Shimada, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2008	—	`conf`	Computerized microscopic image analysis of follicular lymphoma. Computer-Aided Diagnosis Olcay Sertel, Jun Kong, Gerard Lozanski, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2008	A	`conf`	Designing and parameterizing a workflow for optimization: A case study in biomedical imaging. IPDPS Vijay S. Kumar, Mary W. Hall, Jihie Kim, Yolanda Gil, Tahsin M. Kurç, Ewa Deelman, Varun Ratnakar, Joel H. Saltz
2008	—	`ed.`	Global Healthgrid: e-Science Meets Biomedical Informatics - Proceedings of HealthGrid 2008, Chicago, IL, USA, 2-4 June, 2008 HealthGrid Tony Solomonides, Jonathan C. Silverstein, Joel H. Saltz, Yannick Legré, Mary Kratz, Ian T. Foster, Vincent Breton, J. Robert Beck
2008	J	`jnl`	Large-Scale Biomedical Image Analysis in Grid Environments. IEEE Trans. Inf. Technol. Biomed. Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Tony C. Pan, Sunny K. Chow, Stephan Lamont, Maryann E. Martone, Joel H. Saltz
2008	J	`jnl`	Model Formulation: Sharing Data and Analytical Resources Securely in a Biomedical Research Grid Environment. J. Am. Medical Informatics Assoc. Stephen Langella, Shannon Hastings, Scott Oster, Tony Pan, Ashish Sharma, Justin Permar, David Ervin, Berkant Barla Cambazoglu, Tahsin M. Kurç, Joel H. Saltz
2008	J	`jnl`	Model Formulation: caGrid 1.0: An Enterprise Grid Infrastructure for Biomedical Research. J. Am. Medical Informatics Assoc. Scott Oster, Stephen Langella, Shannon Hastings, David Ervin, Ravi K. Madduri, Joshua Phillips, Tahsin M. Kurç, Frank Siebenlist, Peter A. Covitz, Krishnakant Shanbhag, Ian T. Foster, Joel H. Saltz
2008	A	`conf`	Multi-hop path splitting and multi-pathing optimizations for data transfers over shared wide-area networks using gridFTP. HPDC Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz, Rajkumar Kettimuthu, Ian T. Foster
2008	—	`conf`	Pathological image segmentation for neuroblastoma using the GPU. ISBI Antonio Ruiz, Jun Kong, Manuel Ujaldon, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2008	Misc	`conf`	Processing of Large-Scale Biomedical Images on a Cluster of Multicore CPUs and GPUs. High Performance Computing Workshop Ümit V. Çatalyürek, Timothy D. R. Hartley, Olcay Sertel, Manuel Ujaldon, Antonio Ruiz, Joel H. Saltz, Metin N. Gurcan
2008	J	`jnl`	Reconstruction of Cellular Biological Structures from Optical Microscopy Data. IEEE Trans. Vis. Comput. Graph. Kishore Mosaliganti, Lee Cooper, Richard Sharp, Raghu Machiraju, Gustavo Leone, Kun Huang, Joel H. Saltz
2008	Misc	`conf`	Texture classification using nonlinear color quantization: Application to histopathological image analysis. ICASSP Olcay Sertel, Jun Kong, Gerard Lozanski, Arwa Shanaah, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2008	A	`conf`	Translational research design templates, Grid computing, and HPC. IPDPS Joel H. Saltz, Scott Oster, Shannon Hastings, Stephen Langella, Renato Ferreira, Justin Permar, Ashish Sharma, David Ervin, Tony Pan, Ümit V. Çatalyürek, Tahsin M. Kurç
2008	A	`conf`	Using overlays for efficient data transfer over shared wide-area networks. SC Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, Rajkumar Kettimuthu, P. Sadayappan, Ian T. Foster, Joel H. Saltz
2008	J	`jnl`	e-Science, caGrid, and Translational Biomedical Research. Computer Joel H. Saltz, Tahsin M. Kurç, Shannon Hastings, Stephen Langella, Scott Oster, David Ervin, Ashish Sharma, Tony Pan, Metin N. Gurcan, Justin Permar, Renato Ferreira, Philip R. O. Payne, Ümit V. Çatalyürek, Enrico Caserta, Gustavo Leone, Michael C. Ostrowski, Ravi K. Madduri, Ian T. Foster, Subhasree Madhavan, Kenneth H. Buetow, Krishnakant Shanbhag, Eliot L. Siegel
2007	J	`jnl`	Active semantic caching to optimize multidimensional data analysis in parallel and distributed environments. Parallel Comput. Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2007	B	`conf`	An Efficient and Reliable Scientific Workflow System. CCGRID Tulio Tavares, George Teodoro, Tahsin M. Kurç, Renato Ferreira, Dorgival Olavo Guedes Neto, Wagner Meira Jr., Ümit V. Çatalyürek, Shannon Hastings, Scott Oster, Stephen Langella, Joel H. Saltz
2007	—	`conf`	Computer-Aided Grading of Neuroblastic Differentiation: Multi-Resolution and Multi-Classifier Approach. ICIP (5) Jun Kong, Olcay Sertel, Hiroyuki Shimada, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2007	Misc	`conf`	Computerized Pathological Image Analysis For Neuroblastoma Prognosis. AMIA Metin N. Gurcan, Jun Kong, Olcay Sertel, Berkant Barla Cambazoglu, Joel H. Saltz, Ümit V. Çatalyürek
2007	J	`jnl`	Detection and Visualization of Surface-Pockets to Enable Phenotyping Studies. IEEE Trans. Medical Imaging Kishore Mosaliganti, Firdaus Janoos, Richard Sharp, Randall Ridgway, Raghu Machiraju, Kun Huang, Pamela Wenzel, Alain de Bruin, Gustavo Leone, Joel H. Saltz
2007	Misc	`conf`	Dynamic Data-Driven Systems Approach for Simulation Based Optimizations. International Conference on Computational Science (1) Tahsin M. Kurç, Xi Zhang, Manish Parashar, Hector Klie, Mary F. Wheeler, Ümit V. Çatalyürek, Joel H. Saltz
2007	—	`conf`	Efficient processing of pathological images using the grid: computer-aided prognosis of neuroblastoma. CLADE@HPDC Berkant Barla Cambazoglu, Olcay Sertel, Jun Kong, Joel H. Saltz, Metin N. Gurcan, Ümit V. Çatalyürek
2007	J	`jnl`	GridIMAGE: A Novel Use of Grid Computing to Support Interactive Human and Computer-Assisted Detection Decision Support. J. Digit. Imaging Metin N. Gurcan, Tony Pan, Ashish Sharma, Tahsin M. Kurç, Scott Oster, Stephen Langella, Shannon Hastings, Khan M. Siddiqui, Eliot L. Siegel, Joel H. Saltz
2007	—	`conf`	Image Analysis for Automated Assessment of Grade of Neuroblastic Differentiation. ISBI Jun Kong, Hiroyuki Shimada, Kim L. Boyer, Joel H. Saltz, Metin N. Gurcan
2007	A	`conf`	Intelligent Optimization of Parallel and Distributed Applications. IPDPS Bhupesh Bansal, Ümit V. Çatalyürek, Jacqueline Chame, Chun Chen, Ewa Deelman, Yolanda Gil, Mary W. Hall, Vijay S. Kumar, Tahsin M. Kurç, Kristina Lerman, Aiichiro Nakano, Yoon-Ju Lee Nelson, Joel H. Saltz, Ashish Sharma, Priya Vashishta
2007	J	`jnl`	Introduce: An Open Source Toolkit for Rapid Development of Strongly Typed Grid Services. J. Grid Comput. Shannon Hastings, Scott Oster, Stephen Langella, David Ervin, Tahsin M. Kurç, Joel H. Saltz
2007	A	`conf`	Knowledge and Cache Conscious Algorithm Design and Systems Support for Data Mining Algorithms. IPDPS Amol Ghoting, Gregory Buehrer, Matthew Goyder, Shirish Tatikonda, Xi Zhang, Srinivasan Parthasarathy, Tahsin M. Kurç, Joel H. Saltz
2007	—	`conf`	Optimizing multiple queries on scientific datasets with partial replicas. GRID Li Weng, Ümit V. Çatalyürek, Tahsin M. Kurç, Gagan Agrawal, Joel H. Saltz
2007	J	`jnl`	Parallel four-dimensional Haralick texture analysis for disk-resident image datasets. Concurr. Comput. Pract. Exp. Brent Woods, Bradley D. Clymer, Johannes T. Heverhagen, Michael V. Knopp, Joel H. Saltz, Tahsin M. Kurç
2007	—	`conf`	Pathological Image Analysis Using the GPU: Stroma Classification for Neuroblastoma. BIBM Antonio Ruiz, Olcay Sertel, Manuel Ujaldon, Ümit V. Çatalyürek, Joel H. Saltz, Metin N. Gurcan
2007	C	`conf`	Performance vs. accuracy trade-offs for large-scale image analysis applications. CLUSTER Vijay S. Kumar, Tahsin M. Kurç, Jun Kong, Ümit V. Çatalyürek, Metin N. Gurcan, Joel H. Saltz
2007	—	`conf`	Scheduling File Transfers for Data-Intensive Jobs on Heterogeneous Clusters. Euro-Par Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2007	Misc	`conf`	The Cancer Biomedical Informatics Grid (caBIG AMIA Stephen Langella, Scott Oster, Shannon Hastings, Frank Siebenlist, Joshua Phillips, David Ervin, Justin Permar, Tahsin M. Kurç, Joel H. Saltz
2007	C	`conf`	The GPU on biomedical image processing for color and phenotype analysis. BIBE Antonio Ruiz, Manuel Ujaldon, Jose Antonio Andrades, Jose Becerra, Kun Huang, Tony Pan, Joel H. Saltz
2007	—	`conf`	Toward Optimizing Latency Under Throughput Constraints for Application Workflows on Clusters. Euro-Par Nagavijayalakshmi Vydyanathan, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2007	B	`conf`	Toward terabyte pattern mining: an architecture-conscious solution. PPoPP Gregory Buehrer, Srinivasan Parthasarathy, Shirish Tatikonda, Tahsin M. Kurç, Joel H. Saltz
2007	J	`jnl`	Volume Rendering Phenotype Differences in Mouse Placenta Microscopy Data. Comput. Sci. Eng. Richard Sharp, Randall Ridgway, Kishore Mosaliganti, Pamela Wenzel, Tony Pan, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz
2007	Misc	`conf`	caGrid 1.0: A Grid Enterprise Architecture for Cancer Research. AMIA Scott Oster, Stephen Langella, Shannon Hastings, David Ervin, Ravi K. Madduri, Tahsin M. Kurç, Frank Siebenlist, Peter A. Covitz, Krishnakant Shanbhag, Ian T. Foster, Joel H. Saltz
2006	C	`conf`	A Data Locality Aware Online Scheduling Approach for I/O-Intensive Jobs with File Sharing. JSSPP Gaurav Khanna, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2006	—	`conf`	A New Deformable Model for Boundary Tracking in Cardiac MRI and Its Application to the Detection of Intra-Ventricular Dyssynchrony. CVPR (1) Paulo F. U. Gotardo, Kim L. Boyer, Joel H. Saltz, Subha V. Raman
2006	C	`conf`	A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments. SBAC-PAD George Teodoro, Tulio Tavares, Renato Ferreira, Tahsin M. Kurç, Wagner Meira Jr., Dorgival Olavo Guedes Neto, Tony Pan, Joel H. Saltz
2006	B	`conf`	An Integrated Approach for Processor Allocation and Scheduling of Mixed-Parallel Applications. ICPP Nagavijayalakshmi Vydyanathan, Sriram Krishnamoorthy, Gerald Sabin, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2006	J	`jnl`	Application of Information Technology: An XML-based System for Synthesis of Data from Disparate Databases. J. Am. Medical Informatics Assoc. Tahsin M. Kurç, Daniel Janies, Andrew D. Johnson, Stephen Langella, Scott Oster, Shannon Hastings, Farhat Habib, Terry Camerlengo, David Ervin, Ümit V. Çatalyürek, Joel H. Saltz
2006	A	`conf`	Design and analysis of a multi-dimensional data sampling service for large scale data analysis applications. IPDPS Xi Zhang, Tahsin M. Kurç, Joel H. Saltz, Srinivasan Parthasarathy
2006	B	`conf`	Dorian: Grid Service Infrastructure for Identity Management and Federation. CBMS Stephen Langella, Scott Oster, Shannon Hastings, Frank Siebenlist, Tahsin M. Kurç, Joel H. Saltz
2006	A	`conf`	I/O conscious algorithm design and systems support for data analysis on emerging architectures. IPDPS Gregory Buehrer, Amol Ghoting, Xi Zhang, Shirish Tatikonda, Srinivasan Parthasarathy, Tahsin M. Kurç, Joel H. Saltz
2006	—	`conf`	Image Analysis for Neuroblastoma Classification: Segmentation of Cell Nuclei. EMBC Metin N. Gurcan, Tony Pan, Hiroyuki Shimada, Joel H. Saltz
2006	A	`conf`	Imaging and visual analysis - Large image correction and warping in a cluster environment. SC Vijay S. Kumar, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Sunny K. Chow, Stephan Lamont, Maryann E. Martone
2006	C	`conf`	Locality Conscious Processor Allocation and Scheduling for Mixed Parallel Applications. CLUSTER Nagavijayalakshmi Vydyanathan, Sriram Krishnamoorthy, Gerald Sabin, Ümit V. Çatalyürek, Tahsin M. Kurç, P. Sadayappan, Joel H. Saltz
2006	J	`jnl`	Models, methods and middleware for grid-enabled multiphysics oil reservoir management. Eng. Comput. Hector Klie, Wolfgang Bangerth, X. Gai, Mary F. Wheeler, Paul L. Stoffa, Mrinal K. Sen, Manish Parashar, Ümit V. Çatalyürek, Joel H. Saltz, Tahsin M. Kurç
2006	B	`conf`	On Creating Efficient Object-relational Views of Scientific Datasets. ICPP Sivaramakrishnan Narayanan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz
2006	—	`conf`	On the detection of intra-ventricular dyssynchrony in the left ventricle from routine cardiac MRI. ISBI Kim L. Boyer, Paulo F. U. Gotardo, Joel H. Saltz, Subha V. Raman
2006	—	`conf`	Preventing Signal Degradation During Elastic Matching of Noisy DCE-MR Eye Images. MICCAI (1) Kishore Mosaliganti, Guang Jia, Johannes T. Heverhagen, Raghu Machiraju, Joel H. Saltz, Michael V. Knopp
2006	Misc	`conf`	Prototype Integration of Protein Electrophoresis Laboratory Results In an Information Warehouse to Improve Workflow and Data Analysis. AMIA Jianhua Liu, Scott A. Silvey, Michael G. Bissell, Joel H. Saltz, Jyoti Kamal
2006	B	`conf`	Registration and 3D visualization of large microscopy images. Image Processing Kishore Mosaliganti, Tony Pan, Richard Sharp, Randall Ridgway, Srivathsan Iyengar, Alexandra Gulacy, Pamela Wenzel, Alain de Bruin, Raghu Machiraju, Kun Huang, Gustavo Leone, Joel H. Saltz
2006	Misc	`conf`	Service-Based Access to and Processing of Large Scientific Datasets. High Performance Computing Workshop Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Olcay Sertel, Jun Kong, Berkant Barla Cambazoglu, Tony Pan, Ashish Sharma, Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Metin Nafi Gürcan, Joel H. Saltz
2006	J	`jnl`	Supporting Scalable and Distributed Data Subsetting and Aggregation in Large-Scale Seismic Data Analysis. Int. J. High Perform. Comput. Appl. Xi Zhang, Benjamin Rutt, Ümit V. Çatalyürek, Tahsin M. Kurç, Paul L. Stoffa, Mrinal K. Sen, Joel H. Saltz
2006	A	`conf`	Task Scheduling and File Replication for Data-Intensive Jobs with Batch-shared I/O. HPDC Gaurav Khanna, Nagavijayalakshmi Vydyanathan, Ümit V. Çatalyürek, Tahsin M. Kurç, Sriram Krishnamoorthy, P. Sadayappan, Joel H. Saltz
2006	Misc	`conf`	Towards Dynamic Data-Driven Management of the Ruby Gulch Waste Repository. International Conference on Computational Science (3) Manish Parashar, Vincent Matossian, Hector Klie, Sunil G. Thomas, Mary F. Wheeler, Tahsin M. Kurç, Joel H. Saltz, Roelof Versteeg
2006	B	`conf`	Using Space and Attribute Partitioned Partial Replicas for Data Subsetting and Aggregation Queries. ICPP Li Weng, Ümit V. Çatalyürek, Tahsin M. Kurç, Gagan Agrawal, Joel H. Saltz
2006	J	`jnl`	caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid. Bioinform. Joel H. Saltz, Scott Oster, Shannon Hastings, Stephen Langella, Tahsin M. Kurç, William Sanchez, Manav Kher, Arumani Manisundaram, Krishnakant Shanbhag, Peter A. Covitz
2005	A	`conf`	A Services Oriented Framework for Next Generation Data Analysis Centers. IPDPS Huai Wang, Amol Ghoting, Gregory Buehrer, Shirish Tatikonda, Srinivasan Parthasarathy, Tahsin M. Kurç, Joel H. Saltz
2005	B	`conf`	A hypergraph partitioning based approach for scheduling of tasks with batch-shared I/O. CCGRID Gaurav Khanna, Nagavijayalakshmi Vydyanathan, Tahsin M. Kurç, Ümit V. Çatalyürek, Pete Wyckoff, Joel H. Saltz, P. Sadayappan
2005	J	`jnl`	A simulation and data analysis system for large-scale, data-driven oil reservoir simulation studies. Concurr. Pract. Exp. Tahsin M. Kurç, Ümit V. Çatalyürek, Xi Zhang, Joel H. Saltz, Ryan Martino, Mary F. Wheeler, Malgorzata Peszynska, Alan Sussman, Christian Hansen, Mrinal K. Sen, Roustam Seifoullaev, Paul L. Stoffa, Carlos Torres-Verdín, Manish Parashar
2005	J	`jnl`	Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies. Future Gener. Comput. Syst. Manish Parashar, Hector Klie, Ümit V. Çatalyürek, Tahsin M. Kurç, Wolfgang Bangerth, Vincent Matossian, Joel H. Saltz, Mary F. Wheeler
2005	J	`jnl`	Application of Information Technology: A Grid-Based Image Archival and Analysis System. J. Am. Medical Informatics Assoc. Shannon Hastings, Scott Oster, Stephen Langella, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Joel H. Saltz
2005	A	`conf`	Design of a next generation sampling service for large scale data analysis applications. ICS Huai Wang, Srinivasan Parthasarathy, Amol Ghoting, Shirish Tatikonda, Gregory Buehrer, Tahsin M. Kurç, Joel H. Saltz
2005	C	`conf`	Distributed Out-of-Core Preprocessing of Very Large Microscopy Images for Efficient Querying. CLUSTER Benjamin Rutt, Vijay S. Kumar, Tony Pan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Yujun Wang
2005	—	`conf`	Exploiting Parallelism on Irregular Applications Using the GPU. PARCO Manuel Ujaldon, Joel H. Saltz
2005	Misc	`conf`	Grid-based management of biomedical data using an XML-based distributed data management system. SAC Shannon Hastings, Stephen Langella, Scott Oster, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Daniel Janies, Joel H. Saltz
2005	—	`conf`	Servicing Seismic and Oil Reservoir Simulation Data Through Grid Data Services. DMG Sivaramakrishnan Narayanan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz
2005	B	`conf`	Servicing range queries on multidimensional datasets with partial replicas. CCGRID Li Weng, Ümit V. Çatalyürek, Tahsin M. Kurç, Gagan Agrawal, Joel H. Saltz
2005	—	`conf`	Supporting Large Scale Medical and Scientific Datasets. PARCO Ümit V. Çatalyürek, Shannon Hastings, Kun Huang, Vijay S. Kumar, Tahsin M. Kurç, Stephen Langella, Sivaramakrishnan Narayanan, Scott Oster, Tony Pan, Benjamin Rutt, Xi Zhang, Joel H. Saltz
2005	J	`jnl`	The GPU as an indirection engine for a fast information retrieval. Int. J. Electron. Bus. Manuel Ujaldon, Joel H. Saltz
2005	—	`conf`	The GPU on irregular computing: performance issues and contributions. CAD/Graphics Manuel Ujaldon, Joel H. Saltz
2005	Misc	`conf`	Towards Dynamic Data-Driven Optimization of Oil Well Placement. International Conference on Computational Science (2) Manish Parashar, Vincent Matossian, Wolfgang Bangerth, Hector Klie, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Mary F. Wheeler
2005	J	`jnl`	XML database support for distributed execution of data-intensive scientific workflows. SIGMOD Rec. Shannon Hastings, Matheus Ribeiro, Stephen Langella, Scott Oster, Ümit V. Çatalyürek, Tony Pan, Kun Huang, Renato Ferreira, Joel H. Saltz, Tahsin M. Kurç
2004	A	`conf`	A Parallel Implementation of 4-Dimensional Haralick Texture Analysis for Disk-Resident Image Datasets. SC Brent Woods, Bradley D. Clymer, Joel H. Saltz, Tahsin M. Kurç
2004	C	`conf`	A distributed data management middleware for data-driven application systems. CLUSTER Stephen Langella, Shannon Hastings, Scott Oster, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz
2004	—	`conf`	An Algorithm for Reconstruction of Markov Blankets in Bayesian Networks of Gene Expression Datasets. CSB Catalin C. Barbacioru, Daniel J. Cowden, Joel H. Saltz
2004	A	`conf`	An Approach for Automatic Data Virtualization. HPDC Li Weng, Gagan Agrawal, Ümit V. Çatalyürek, Tahsin M. Kurç, Sivaramakrishnan Narayanan, Joel H. Saltz
2004	Misc	`conf`	Application of Grid-Enabled Technologies for Solving Optimization Problems in Data-Driven Reservoir Studies. International Conference on Computational Science Manish Parashar, Hector Klie, Ümit V. Çatalyürek, Tahsin M. Kurç, Vincent Matossian, Joel H. Saltz, Mary F. Wheeler
2004	J	`jnl`	Optimizing the Execution of Multiple Data Analysis Queries on Parallel and Distributed Environments. IEEE Trans. Parallel Distributed Syst. Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2004	B	`conf`	Serving queries to multi-resolution datasets on disk-based storage clusters. CCGRID Xi Zhang, Tony Pan, Ümit V. Çatalyürek, Tahsin M. Kurç, Joel H. Saltz
2004	A	`conf`	Strategies for Using Additional Resources in Parallel Hash-Based Join Algorithms. HPDC Xi Zhang, Tahsin M. Kurç, Tony Pan, Ümit V. Çatalyürek, Sivaramakrishnan Narayanan, Pete Wyckoff, Joel H. Saltz
2004	—	`conf`	Supporting SQL-3 Aggregations on Grid-Based Data Repositories. LCPC Li Weng, Gagan Agrawal, Ümit V. Çatalyürek, Joel H. Saltz
2004	Misc	`conf`	Tools for efficient subsetting and pipelined processing of large scale, distributed biomedical image data. High Performance Computing Workshop Matheus Ribeiro, Tahsin M. Kurç, Tony Pan, Kun Huang, Ümit V. Çatalyürek, Xi Zhang, Stephen Langella, Shannon Hastings, Scott Oster, Renato Ferreira, Joel H. Saltz
2004	—	`conf`	Use of PVFS for Efficient Execution of Jobs with Pipeline-Shared I/O. GRID Nagavijayalakshmi Vydyanathan, Gaurav Khanna, Tahsin M. Kurç, Ümit V. Çatalyürek, Pete Wyckoff, Joel H. Saltz, P. Sadayappan
2003	Misc	`conf`	A Component-based Implementation of Multiple Sequence Alignment. SAC Ümit V. Çatalyürek, Mike Gray, Tahsin M. Kurç, Joel H. Saltz, Eric Stahlberg, Renato Ferreira
2003	B	`conf`	A Slacker Coherence rotocol for Pull-based Monitoring of On-line Data Source. CCGRID Radhakrishnan Sundaresan, Tahsin M. Kurç, Mario Lauria, Srinivasan Parthasarathy, Joel H. Saltz
2003	A	`conf`	Adaptive Polling of Grid Resource Monitors Using a Slacker Coherence Model. HPDC Radhakrishnan Sundaresan, Mario Lauria, Tahsin M. Kurç, Srinivasan Parthasarathy, Joel H. Saltz
2003	—	`conf`	Applying Database Support for Large Scale Data Driven Science in Distributed Environments. GRID Sivaramakrishnan Narayanan, Ümit V. Çatalyürek, Tahsin M. Kurç, Xi Zhang, Joel H. Saltz
2003	J	`jnl`	Database Support for Data-Driven Scientific Applications in the Grid. Parallel Process. Lett. Sivaramakrishnan Narayanan, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz
2003	Misc	`conf`	Driving Scientific Applications by Data in Distributed Environments. International Conference on Computational Science Joel H. Saltz, Ümit V. Çatalyürek, Tahsin M. Kurç, Mike Gray, Shannon Hastings, Stephen Langella, Sivaramakrishnan Narayanan, Ryan Martino, Steven Bryant, Malgorzata Peszynska, Mary F. Wheeler, Alan Sussman, Michael D. Beynon, Christian Hansen, Don Stredney, Dennis Sessanna
2003	—	`conf`	Efficient Execution of Multi-query Data Analysis Batches Using Compiler Optimization Strategies. LCPC Henrique Andrade, Suresh Aryangat, Tahsin M. Kurç, Joel H. Saltz, Alan Sussman
2003	A	`conf`	Exploiting Functional Decomposition for Efficient Parallel Processing of Multiple Data Analysis Queries. IPDPS Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2003	J	`jnl`	Identifying parallelism in programs with cyclic graphs. J. Parallel Distributed Comput. Yuan-Shin Hwang, Joel H. Saltz
2003	B	`conf`	Image Processing or the Grid: A Toolkit or Building Grid-enabled Image Processing Applications. CCGRID Shannon Hastings, Tahsin M. Kurç, Stephen Langella, Ümit V. Çatalyürek, Tony Pan, Joel H. Saltz
2003	Misc	`conf`	Impact of CPOE Order Sets on Lab Orders. AMIA Hagop S. Mekhjian, Joel H. Saltz, Patrick Rogers, Jyoti Kamal
2003	A	`conf`	Impact of High Performance Sockets on Data Intensive Applications. HPDC Pavan Balaji, Jiesheng Wu, Tahsin M. Kurç, Ümit V. Çatalyürek, Dhabaleswar K. Panda, Joel H. Saltz
2003	Misc	`conf`	Information Warehouse as a Tool to Analyze Computerized Physician Order Entry Order Set Utilization: Opportunities for Improvement. AMIA Jyoti Kamal, Patrick Rogers, Joel H. Saltz, Hagop S. Mekhjian
2003	J	`jnl`	Interprocedural definition-use chains of dynamic pointer-linked data structures. Sci. Program. Yuan-Shin Hwang, Joel H. Saltz
2003	—	`conf`	Middleware Infrastructure for Large-Scale Data Management. IEEE Symposium on Parallel and Large-Data Visualization and Graphics Joel H. Saltz
2003	A	`conf`	Optimizing Reduction Computations In a Distributed Environment. SC Tahsin M. Kurç, Feng Lee, Gagan Agrawal, Ümit V. Çatalyürek, Renato Ferreira, Joel H. Saltz
2003	Misc	`conf`	Order Sets Utilization in a Clinical Order Entry System. AMIA Daniel J. Cowden, Catalin C. Barbacioru, Eiad B. Kahwash, Joel H. Saltz
2003	Misc	`conf`	Pharmacokinetic Mapping of Breast Tumors: a New Statistical Analysis Technique for Dynamic magnetic resonance Imaging. AMIA Catalin C. Barbacioru, Anand Arunachalam, Daniel J. Cowden, Eiad B. Kahwash, Joel H. Saltz
2003	Misc	`conf`	Proteomic Pattern Analysis, a New Era of Screening Cancers. AMIA Eiad B. Kahwash, Catalin C. Barbacioru, Daniel J. Cowden, Joel H. Saltz
2003	J	`jnl`	The virtual microscope. IEEE Trans. Inf. Technol. Biomed. Ümit V. Çatalyürek, Michael D. Beynon, Chialin Chang, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2002	A	`conf`	Active Proxy-G: optimizing the query execution process in the grid. SC Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2002	A	`conf`	Compiler supported high-level abstractions for sparse disk-resident datasets. ICS Renato Ferreira, Gagan Agrawal, Joel H. Saltz
2002	J	`jnl`	Data parallel language and compiler support for data intensive applications. Parallel Comput. Renato Ferreira, Gagan Agrawal, Joel H. Saltz
2002	A	`conf`	Efficient Manipulation of Large Datasets on Heterogeneous Storage Systems. IPDPS Michael D. Beynon, Tahsin M. Kurç, Ümit V. Çatalyürek, Alan Sussman, Joel H. Saltz
2002	A	`conf`	Executing multiple pipelined data analysis operations in the grid. SC Matthew Spencer, Renato Ferreira, Michael D. Beynon, Tahsin M. Kurç, Ümit V. Çatalyürek, Alan Sussman, Joel H. Saltz
2002	A	`conf`	Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments. IPDPS Ümit V. Çatalyürek, Eric Stahlberg, Renato Ferreira, Tahsin M. Kurç, Joel H. Saltz
2002	C	`conf`	Low-Cost Non-Intrusive Debugging Strategies for Distributed Parallel Programs. CLUSTER Michael D. Beynon, Henrique Andrade, Joel H. Saltz
2002	B	`conf`	Multiple Query Optimization for Data Analysis Applications on Clusters of SMPs. CCGRID Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2002	J	`jnl`	Optimizing execution of component-based applications using group instances. Future Gener. Comput. Syst. Michael D. Beynon, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2002	J	`jnl`	Processing large-scale multi-dimensional data in parallel and distributed environments. Parallel Comput. Michael D. Beynon, Chialin Chang, Ümit V. Çatalyürek, Tahsin M. Kurç, Alan Sussman, Henrique Andrade, Renato Ferreira, Joel H. Saltz
2002	A	`conf`	Scheduling Multiple Data Visualization Query Workloads on a Shared Memory Machine. IPDPS Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2001	—	`conf`	A Hypergraph-Based Workload Partitioning Strategy for Parallel Data Aggregation. PP Chialin Chang, Tahsin M. Kurç, Alan Sussman, Ümit V. Çatalyürek, Joel H. Saltz
2001	J	`jnl`	Analysis of the Clustering Properties of the Hilbert Space-Filling Curve. IEEE Trans. Knowl. Data Eng. Bongki Moon, H. V. Jagadish, Christos Faloutsos, Joel H. Saltz
2001	—	`conf`	Compiler and Runtime Analysis for Efficient Communication in Data Intensive Applications. IEEE PACT Renato Ferreira, Joel H. Saltz, Gagan Agrawal
2001	J	`jnl`	Distributed processing of very large datasets with DataCutter. Parallel Comput. Michael D. Beynon, Tahsin M. Kurç, Ümit V. Çatalyürek, Chialin Chang, Alan Sussman, Joel H. Saltz
2001	A	`conf`	Efficient execution of multiple query workloads in data analysis applications. SC Henrique Andrade, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2001	B	`conf`	Optimizing Execution of Component-based Applications using Group Instances. CCGRID Michael D. Beynon, Alan Sussman, Tahsin M. Kurç, Joel H. Saltz
2001	—	`conf`	Performance Optimization for Data Intensive Grid Applications. Active Middleware Services Michael D. Beynon, Alan Sussman, Ümit V. Çatalyürek, Tahsin M. Kurç, Joel H. Saltz
2001	—	`conf`	Runtime and Compiler Support for Irregular Computations. Compiler Optimizations for Scalable Parallel Systems Languages Raja Das, Yuan-Shin Hwang, Joel H. Saltz, Alan Sussman
2001	J	`jnl`	Visualization of Large Data Sets with the Active Data Repository. IEEE Computer Graphics and Applications Tahsin M. Kurç, Ümit V. Çatalyürek, Chialin Chang, Alan Sussman, Joel H. Saltz
2000	—	`conf`	Compiling Data Intensive Applications with Spatial Coordinates. LCPC Renato Ferreira, Gagan Agrawal, Ruoming Jin, Joel H. Saltz
2000	A	`conf`	Compiling object-oriented data intensive applications. ICS Renato Ferreira, Gagan Agrawal, Joel H. Saltz
2000	—	`conf`	DataCutter: Middleware for Filtering Very Large Scientific Datasets on Archival Storage Systems. IEEE Symposium on Mass Storage Systems Michael D. Beynon, Renato Ferreira, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2000	—	`conf`	Design of a Framework for Data-Intensive Wide-Area Applications. Heterogeneous Computing Workshop Michael D. Beynon, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2000	J	`jnl`	Efficient Performance Prediction for Large-Scale, Data-Intensive Applications. Int. J. High Perform. Comput. Appl. Tahsin M. Kurç, Mustafa Uysal, Hyeonsang Eom, Jeffrey K. Hollingsworth, Joel H. Saltz, Alan Sussman
2000	A*	`conf`	Evaluation of Active Disks for Decision Support Databases. HPCA Mustafa Uysal, Anurag Acharya, Joel H. Saltz
2000	—	`conf`	High Level Programming Methodologies for Data Intensive Computations. LCR Gagan Agrawal, Renato Ferreira, Ruoming Jin, Joel H. Saltz
2000	B	`conf`	Identifying Parallelism in Programs with Cyclic Graphs. ICPP Yuan-Shin Hwang, Joel H. Saltz
2000	A	`conf`	Optimizing Retrieval and Processing of Multi-Dimensional Scientific Datasets. IPDPS Chialin Chang, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
2000	—	`conf`	Query Optimization in KESS - An Ontology-Based KBMS. SBBD Henrique Andrade, Joel H. Saltz
1999	Misc	`conf`	A High-Performance Database System for Managing Large Multi-resolution Medical Images. AMIA Tahsin M. Kurç, Michael D. Beynon, Chialin Chang, Renato Ferreira, Ben Bederson, Joel H. Saltz, Alan Sussman
1999	A*	`conf`	Active Storage Hierarchy, Database Systems and Applications - Socratic Exegesis. VLDB Felipe Cariño, William O'Connell, John G. Burgess, Joel H. Saltz
1999	—	`conf`	Coupling Multiple Simulations via a High Performance Customizable Database System. PP Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
1999	Misc	`conf`	Database Methods for Efficient Manipulation of Very Large Datasets. PDPTA Renato Ferreira, Alan Sussman, Joel H. Saltz
1999	—	`conf`	Infrastructure for Building Parallel Database Systems for Multi-Dimensional Data. IPPS/SPDP Chialin Chang, Renato Ferreira, Alan Sussman, Joel H. Saltz
1999	J	`jnl`	Object-Relational Queries into Multidimensional Databases with the Active Data Repository. Parallel Process. Lett. Renato Ferreira, Tahsin M. Kurç, Michael D. Beynon, Chialin Chang, Alan Sussman, Joel H. Saltz
1999	A	`conf`	Performance impact of proxies in data intensive client-server applications. International Conference on Supercomputing Michael D. Beynon, Alan Sussman, Joel H. Saltz
1999	A	`conf`	Querying Very Large Multi-dimensional Datasets in ADR. SC Tahsin M. Kurç, Chialin Chang, Renato Ferreira, Alan Sussman, Joel H. Saltz
1999	—	`conf`	Towards a Knowledge Base Management System (KBMS): An Ontology-Aware Database Management System (DBMS). SBBD Henrique Andrade, Joel H. Saltz
1998	—	`conf`	A Performance Prediction Framework for Data Intensive Applications on Large Scale Parallel Machines. LCR Mustafa Uysal, Tahsin M. Kurç, Alan Sussman, Joel H. Saltz
1998	Misc	`conf`	A graphical tool for ad hoc query generation. AMIA Kilian Stoffel, John D. Davis, Gerald Rottman, Joel H. Saltz, James Dick, William Merz, Robert Miller
1998	A*	`conf`	Active Disks: Programming Model, Algorithms and Evaluation. ASPLOS Anurag Acharya, Mustafa Uysal, Joel H. Saltz
1998	A	`conf`	Adapting to Bandwidth Variations in Wide-Area Data Combination. ICDCS M. Ranganathan, Anurag Acharya, Joel H. Saltz
1998	Misc	`conf`	Digital dynamic telepathology-the Virtual Microscope. AMIA Asmara Afework, Michael D. Beynon, Fabian E. Bustamante, Soon Cho, Angelo Demarzo, Renato Ferreira, Robert Miller, Mark Silberman, Joel H. Saltz, Alan Sussman, Hubert Tsang
1998	J	`jnl`	Programming Tools and Environments. Commun. ACM Joel H. Saltz, Alan Sussman, Susan L. Graham, James Demmel, Scott B. Baden, Jack J. Dongarra
1998	J	`jnl`	Scalability Analysis of Declustering Methods for Multidimensional Range Queries. IEEE Trans. Knowl. Data Eng. Bongki Moon, Joel H. Saltz
1998	J	`jnl`	T2: A Customizable Parallel Database for Multi-Dimensional Data. SIGMOD Rec. Chialin Chang, Anurag Acharya, Alan Sussman, Joel H. Saltz
1998	J	`jnl`	The Design and Evaluation of a High-Performance Earth Science Database. Parallel Comput. Carter Shock, Chialin Chang, Bongki Moon, Anurag Acharya, Larry S. Davis, Joel H. Saltz, Alan Sussman
1997	—	`conf`	A Customizable Simulator for Workstation Networks. IPPS Mustafa Uysal, Anurag Acharya, Robert Bennett, Joel H. Saltz
1997	—	`conf`	Identifying DEF/USE Information of Statements that Construct and Traverse Dynamic Recursive Data Structures. LCPC Yuan-Shin Hwang, Joel H. Saltz
1997	—	`conf`	Interoperability of Data Parallel Runtime Libraries. IPPS Guy Edjlali, Alan Sussman, Joel H. Saltz
1997	J	`jnl`	Interprocedural Data Flow Based Optimizations for Distributed Memory Compilation. Softw. Pract. Exp. Gagan Agrawal, Joel H. Saltz
1997	A	`conf`	Page Replacement Using Marginal Loss Functions. SC Manuel Ujaldon, Shamik D. Sharma, Joel H. Saltz
1997	—	`ch.`	Parka on MIMD-supercomputers. Parallel Processing for Artificial Intelligence 3 Kilian Stoffel, James A. Hendler, Joel H. Saltz
1997	J	`jnl`	Programming Irregular Applications: Runtime Support, Compilation and Tools. Adv. Comput. Joel H. Saltz, Gagan Agrawal, Chialin Chang, Raja Das, Guy Edjlali, Paul Havlak, Yuan-Shin Hwang, Bongki Moon, Ravi Ponnusamy, Shamik D. Sharma, Alan Sussman, Mustafa Uysal
1997	J	`jnl`	Resource-aware metacomputing. Concurr. Pract. Exp. Anurag Acharya, M. Ranganathan, Joel H. Saltz
1997	—	`conf`	Scheduling in a High Performance Remote-Sensing Data Server. PP Chialin Chang, Alan Sussman, Joel H. Saltz
1997	Misc	`conf`	Semantic Indexing for Complex Patient Grouping. AMIA Kilian Stoffel, Joel H. Saltz, Jim Hendler, James Dick, William Merz, Robert Miller
1997	A*	`conf`	The Utility of Exploiting Idle Workstations for Parallel Computation. SIGMETRICS Anurag Acharya, Guy Edjlali, Joel H. Saltz
1997	Misc	`conf`	The Virtual Microscope. AMIA Renato Ferreira, Bongki Moon, Jim Humphries, Alan Sussman, Joel H. Saltz, Robert Miller, Angelo Demarzo
1997	A*	`conf`	Titan: A High-Performance Remote Sensing Database. ICDE Chialin Chang, Bongki Moon, Anurag Acharya, Carter Shock, Alan Sussman, Joel H. Saltz
1996	—	`conf`	A High Performance Image Database System for Remotely Sensed Imagery. Euro-Par, Vol. II Carter Shock, Chialin Chang, Larry S. Davis, Samuel Goward, Joel H. Saltz, Alan Sussman
1996	A	`conf`	An Interprocedural Framework for Placement of Asynchronous I/O Operations. International Conference on Supercomputing Gagan Agrawal, Anurag Acharya, Joel H. Saltz
1996	—	`conf`	Dynamic Linking for Mobile Programs. Mobile Object Systems Anurag Acharya, Joel H. Saltz
1996	A	`conf`	Experimental Evaluation of Efficient Sparse Matrix Distributions. International Conference on Supercomputing Manuel Ujaldon, Shamik D. Sharma, Emilio L. Zapata, Joel H. Saltz
1996	J	`jnl`	Parallelization Techniques for Sparse Matrix Applications. J. Parallel Distributed Comput. Manuel Ujaldon, Emilio L. Zapata, Shamik D. Sharma, Joel H. Saltz
1996	A	`conf`	Runtime Coupling of Data-Parallel Programs. International Conference on Supercomputing M. Ranganathan, Anurag Acharya, Guy Edjlali, Alan Sussman, Joel H. Saltz
1996	—	`conf`	Side Effect Analysis on User-Defined Reduction Functions with Dynamic Pointer-Linked Data Structures. LCPC Yuan-Shin Hwang, Joel H. Saltz
1996	—	`conf`	Study of Scalable Declustering Algorithms for Parallel Grid Files. IPPS Bongki Moon, Anurag Acharya, Joel H. Saltz
1996	—	`conf`	Sumatra: A Language for Resource-Aware Mobile Programs. Mobile Object Systems Anurag Acharya, M. Ranganathan, Joel H. Saltz
1996	—	`conf`	Tuning the Performance of I/O-Intensive Parallel Applications. IOPADS Anurag Acharya, Mustafa Uysal, Robert Bennett, Assaf Mendelson, Michael D. Beynon, Jeffrey K. Hollingsworth, Joel H. Saltz, Alan Sussman
1995	J	`jnl`	An Integrated Runtime and Compile-Time Approach for Parallelizing Structured and Block Structured Applications. IEEE Trans. Parallel Distributed Syst. Gagan Agrawal, Alan Sussman, Joel H. Saltz
1995	—	`conf`	Data parallel programming in an adaptive environment. IPPS Guy Edjlali, Gagan Agrawal, Alan Sussman, Joel H. Saltz
1995	J	`jnl`	Distributed Memory Compiler Design for Sparse Problems. IEEE Trans. Computers Janet Wu, Raja Das, Joel H. Saltz, Harry Berryman, Seema Hiranandani
1995	B	`conf`	Efficient Support for Irregular Applications on Distributed-Memory Machines. PPoPP Shubhendu S. Mukherjee, Shamik D. Sharma, Mark D. Hill, James R. Larus, Anne Rogers, Joel H. Saltz
1995	J	`jnl`	Implementation of a parallel unstructured Euler solver on shared- and distributed-memory architectures. J. Supercomput. Dimitri J. Mavriplis, Raja Das, Joel H. Saltz, R. E. Vermeland
1995	A	`conf`	Index Array Flattening Through Program Transformation. SC Raja Das, Paul Havlak, Joel H. Saltz, Ken Kennedy
1995	—	`conf`	Index translation schemes for adaptive computations on distributed memory multicomputers. IPPS Bongki Moon, Mustafa Uysal, Joel H. Saltz
1995	A	`conf`	Interprocedural Compilation of Irregular Applications for Distributed Memory Machines. SC Gagan Agrawal, Joel H. Saltz
1995	—	`conf`	Interprocedural Data Flow Based Optimizations for Compilation of Irregular Problems. LCPC Gagan Agrawal, Joel H. Saltz
1995	A*	`conf`	Interprocedural Partial Redundancy Elimination and its Application to Distributed Memory Compilation. PLDI Gagan Agrawal, Joel H. Saltz, Raja Das
1995	J	`jnl`	Low Latency Messages on Distributed Memory Multiprocessors. Sci. Program. Matthew Rosing, Joel H. Saltz
1995	J	`jnl`	Multiprocessor Runtime Support for Fine-Grained, Irregular Dags. Parallel Process. Lett. Frederic T. Chong, Shamik D. Sharma, Eric A. Brewer, Joel H. Saltz
1995	—	`conf`	Run-Time Techniques for Parallelizing Sparse Matrix Problems. IRREGULAR Manuel Ujaldon, Shamik D. Sharma, Joel H. Saltz, Emilio L. Zapata
1995	—	`conf`	Runtime Support Dynamic Load Balancing Strategies for Structured Adaptive Applications. PP Bongki Moon, Gopal Patnaik, Robert Bennett, David Fyfe, Alan Sussman, Craig Douglas, Joel H. Saltz, K. Kailasanath
1995	J	`jnl`	Runtime Support and Compilation Methods for User-Specified Irregular Data Distributions. IEEE Trans. Parallel Distributed Syst. Ravi Ponnusamy, Joel H. Saltz, Alok N. Choudhary, Yuan-Shin Hwang, Geoffrey C. Fox
1995	—	`conf`	Runtime Support for Programming in Adaptive Parallel Environments. LCR Gagan Agrawal, Guy Edjlali, Alan Sussman, Jim Humphries, Joel H. Saltz
1995	J	`jnl`	Runtime and Language Support for Compiling Adaptive Irregular Programs on Distributed-memory Machines. Softw. Pract. Exp. Yuan-Shin Hwang, Bongki Moon, Shamik D. Sharma, Ravi Ponnusamy, Raja Das, Joel H. Saltz
1995	J	`jnl`	Supporting irregular distributions using data-parallel languages. IEEE Parallel Distributed Technol. Syst. Appl. Ravi Ponnusamy, Yuan-Shin Hwang, Raja Das, Joel H. Saltz, Alok N. Choudhary, Geoffrey C. Fox
1994	J	`jnl`	Communication Optimizations for Irregular Scientific Computations on Distributed Memory Architectures. J. Parallel Distributed Comput. Raja Das, Mustafa Uysal, Joel H. Saltz, Yuan-Shin Hwang
1994	—	`conf`	High performance computing for land cover dynamics. ICPR (3) Rahul Parulekar, Larry S. Davis, Rama Chellappa, Joel H. Saltz, Alan Sussman, John Townshend
1994	—	`conf`	Interprocedural Communication Optimizations for Distributed Memory Compilation. LCPC Gagan Agrawal, Joel H. Saltz
1994	A	`conf`	Run-time and compile-time support for adaptive irregular problems. SC Shamik D. Sharma, Ravi Ponnusamy, Bongki Moon, Yuan-Shin Hwang, Raja Das, Joel H. Saltz
1994	—	`conf`	Value-Based Distributions in Fortran D. HPCN Reinhard von Hanxleden, Ken Kennedy, Joel H. Saltz
1993	A	`conf`	Common runtime support for high-performance parallel languages. SC Geoffrey C. Fox, Sanjay Ranka, Michael L. Scott, Allen D. Malony, James C. Browne, Marina C. Chen, Alok N. Choudhary, Thomas E. Cheatham, Janice E. Cuny, Rudolf Eigenmann, Amr F. Fahmy, Ian T. Foster, Dennis Gannon, Tomasz Haupt, Carl Kesselman, Charles Koelbel, Wei Li, Monica S. Lam, Thomas J. LeBlanc, Jim Openshaw, David A. Padua, Constantine D. Polychronopoulos, Joel H. Saltz, Alan Sussman, Gil Weigand, Katherine A. Yelick
1993	A	`conf`	Compiler and runtime support for structured and block structured applications. SC Gagan Agrawal, Alan Sussman, Joel H. Saltz
1993	—	`conf`	Parallelizing Molecular Dynamics Codes using the Parti Software Primitives. PPSC Raja Das, Joel H. Saltz
1993	A	`conf`	Runtime compilation techniques for data partitioning and communication schedule reuse. SC Ravi Ponnusamy, Joel H. Saltz, Alok N. Choudhary
1993	—	`conf`	Slicing Analysis and Indirect Accesses to Distributed Arrays. LCPC Raja Das, Joel H. Saltz, Reinhard von Hanxleden
1992	—	`conf`	Compiler Analysis for Irregular Problems in Fortran D. LCPC Reinhard von Hanxleden, Ken Kennedy, Charles Koelbel, Raja Das, Joel H. Saltz
1992	A	`conf`	Compiler and runtime support for irregularly coupled regular meshes. ICS Craig M. Chase, Kay Crowley, Joel H. Saltz, Anthony P. Reeves
1992	—	`conf`	Embedding Data Mappers with Distributed Memory Machine Compilers. SIGPLAN Workshop Ravi Ponnusamy, Joel H. Saltz, Raja Das, Charles Koelbel, Alok N. Choudhary
1992	A	`conf`	Implementation of a Parallel Unstructured Euler Solver on Shared and Distributed Memory Architectures. SC Dimitri J. Mavriplis, Raja Das, R. E. Vermeland, Joel H. Saltz
1992	A	`conf`	Performance of Distributed Sparse Cholesky Factorization with Pre-Scheduling. SC Sesh Venugopal, Vijay K. Naik, Joel H. Saltz
1991	J	`jnl`	Execution time support for adaptive scientific algorithms on distributed memory machines. Concurr. Pract. Exp. Harry Berryman, Joel H. Saltz, Jeffrey S. Scroggs
1991	J	`jnl`	Multiprocessors and run-time compilation. Concurr. Pract. Exp. Joel H. Saltz, Harry Berryman, Janet Wu
1991	J	`jnl`	Performance Effects of Irregular Communication Patterns on Massively Parallel Multiprocessors. J. Parallel Distributed Comput. Joel H. Saltz, Serge G. Petition, Harry Berryman, Adam Rifkin
1991	J	`jnl`	Performance of Hashed Cache Data Migration Schemes on Multicomputers. J. Parallel Distributed Comput. Seema Hiranandani, Joel H. Saltz, Piyush Mehrotra, Harry Berryman
1991	J	`jnl`	Run-Time Parallelization and Scheduling of Loops. IEEE Trans. Computers Joel H. Saltz, Ravi Mirchandaney, Kay Crowley
1991	—	`conf`	Runtime Compilation Methods for Multicomputers. ICPP (2) Janet Wu, Joel H. Saltz, Seema Hiranandani, Harry Berryman
1991	—	`conf`	Solving Unstructured Mesh Problems with Domain Decomposed GMRES/ILU. PP V. Venkatakrishnan, Joel H. Saltz, Dimitri J. Mavriplis
1991	—	`conf`	The Preprocessed Doacross Loop. ICPP (2) Joel H. Saltz, Ravi Mirchandaney
1991	—	`conf`	Unstructured Mesh Problems, PARTI Primitives, and the ARF Compiler. PP Raja Das, Joel H. Saltz, Dimitri J. Mavriplis, Janet Wu, Harry Berryman
1990	J	`jnl`	Aggregation Methods for Solving Sparse Triangular Systems on Multiprocessors. SIAM J. Sci. Comput. Joel H. Saltz
1990	J	`jnl`	An Anlysis of Scatter Decomposition. IEEE Trans. Computers David M. Nicol, Joel H. Saltz
1990	J	`jnl`	Krylov Methods Preconditioned with Incompletely Factored Matrices on the CM-2. J. Parallel Distributed Comput. Harry Berryman, Joel H. Saltz, William Gropp, Ravi Mirchandaney
1990	J	`jnl`	Run-Time Scheduling and Execution of Loops on Message Passing Machines. J. Parallel Distributed Comput. Joel H. Saltz, Kathleen Crowley, Ravi Mirchandaney, Harry Berryman
1989	J	`jnl`	Delay point schedules for irregular parallel computations. Int. J. Parallel Program. David M. Nicol, Joel H. Saltz, James C. Townsend
1989	—	`conf`	Domain Decomposition Methods in Aerodynamics. PP V. Venkatakrishnan, Joel H. Saltz
1989	—	`conf`	Execution Time Support for Scientific Programs on Distributed Memory Machines. PP Harry Berryman, Joel H. Saltz, Jeffrey S. Scroggs
1989	B	`conf`	Run-Time Parallelization and Scheduling of Loops. SPAA Doug Baxter, Ravi Mirchandaney, Joel H. Saltz
1989	A	`conf`	The doconsider loop. ICS Joel H. Saltz, Ravi Mirchandaney, Kathleen Crowley
1988	—	`conf`	An experimental study of methods for parallel preconditioned Krylov methods. C³P Doug Baxter, Joel H. Saltz, Martin H. Schultz, Stanley C. Eisenstat, Kay Crowley
1988	J	`jnl`	Dynamic Remapping of Parallel Computations with Varying Resource Demands. IEEE Trans. Computers David M. Nicol, Joel H. Saltz
1988	J	`jnl`	Parallel processing of biological sequence comparison algorithms. Int. J. Parallel Program. Elizabeth W. Edmiston, Nolan G. Core, Joel H. Saltz, Roger M. Smith
1988	A	`conf`	Principles of runtime support for parallel processors. ICS Ravi Mirchandaney, Joel H. Saltz, Roger M. Smith, David M. Nicol, Kay Crowley
1988	J	`jnl`	Towards developing robust algorithms for solving partial differential equations on MIMD machines. Parallel Comput. Joel H. Saltz, Vijay K. Naik
1987	—	`conf`	The PARTY Parallel Runtime System - Invited Talk. PP Joel H. Saltz, Ravi Mirchandaney, Roger M. Smith, David M. Nicol, Kay Crowley
1986	B	`conf`	A Comparative Analysis of Static and Dynamic Load Balancing Strategies. ICPP Mohammad Ashraf Iqbal, Joel H. Saltz, Shahid H. Bokhari
1985	—	`conf`	Reduction of the effects of the communication delays in scientific algorithms on message passing MIMD architectures. PP Joel H. Saltz, Vijay K. Naik, David M. Nicol
1984	—	`conf`	Performance Analysis of Strategies for Moving Mesh Control. Int. CMG Conference R. Smith, Joel H. Saltz