Joe Stubbs

45 papers B 2Journal 12Unranked 31
YearRankTypeTitle / Venue / Authors
2026 J jnl
Sequencelib: A Computational Platform for Formalizing the OEIS in Lean.
CoRR
Walter Moreira, Joe Stubbs
2025 — conf
A Model for Teaching Machine Learning, Deep Learning, and Research Computing to Domain Scientists on HPC Resources.
SC Workshops
William J. Allen, Kelsey M. Beavers, Erik S. Ferlanti, Lorenzo Concia, Joshua Urrutia, Ernesto A. B. F. Lima, John M. Fonner, Felix Zuo, H. E. Duplechin Seymour, Ari B. Kahn, Joe Stubbs, Anagha Jamthe, Stephanie N. Baker, Tabish Khan, James P. Carson
2025 J jnl
AI/ML Model Cards in Edge AI Cyberinfrastructure: towards Agentic AI.
CoRR
Beth Plale, Neelesh Karthikeyan, Isuru Gamage, Joe Stubbs, Sachith Withana
2024 — conf
A Comprehensive Cloud Architecture for Machine Learning-enabled Research.
PEARC
Joe Stubbs, Dhanny Indrakusuma, Christian Garcia, François Halbach, Cody Hammock, Nathan Dean Freeman, Anagha Jamthe, Michael Packard, Alexander Fields, Gilbert Curbelo
2024 — conf
AI and Science Gateways: A Promising Combination for Accelerating Science and Research Computing.
PEARC
Jeanette M. Sperhac, Sandra Gesing, Michael G. Zentner, Claire Stirm, Rob Quick, Joe Stubbs
2024 — conf
CloudSec: An Extensible Automated Reasoning Framework for Cloud Security Policies.
ACR
Joe Stubbs, Smruti Padhy, Richard Cardone, Steve Black
2024 — conf
Introduction to the Minitrack on Software Sustainability: Research on Usability, Maintainability, and Reproducibility Minitrack.
HICSS
Maytal Dahan, Joe Stubbs, Sandra Gesing
2024 B conf
Toward Smart Scheduling in Tapis.
IEEE Big Data
Joe Stubbs, Smruti Padhy, Richard Cardone
2024 J jnl
Toward Smart Scheduling in Tapis.
CoRR
Joe Stubbs, Smruti Padhy, Richard Cardone
2023 B conf
A Decentralized Authorization and Security Framework for Distributed Research Workflows.
COMPSAC
Richard Cardone, Smruti Padhy, Steve Black, Joe Stubbs, Sean B. Cleveland
2023 J jnl
A Decentralized Authorization and Security Framework for Distributed Research Workflows.
CoRR
Richard Cardone, Smruti Padhy, Steve Black, Sean B. Cleveland, Joe Stubbs
2023 J jnl
An Interactive Knowledge and Learning Environment in Smart Foodsheds.
IEEE Computer Graphics and Applications
Yamei Tu, Xiaoqi Wang, Rui Qiu, Han-Wei Shen, Michelle Miller, Jinmeng Rao, Song Gao, Patrick R. Huber, Allan Hollander, Matthew Lange, Christian Garcia, Joe Stubbs
2023 J jnl
CloudSec: An Extensible Automated Reasoning Framework for Cloud Security Policies.
CoRR
Joe Stubbs, Smruti Padhy, Richard Cardone, Steve Black
2023 — conf
Detailed Functional Overview of an API and Workflow Engine for Scientific Research Computing.
PEARC
Nathan Dean Freeman, Joe Stubbs, Richard Cardone, Christian Garcia
2023 J jnl
Development of Authenticated Clients and Applications for ICICLE CI Services - Final Report for the REHS Program, June-August, 2022.
CoRR
Sahil Samar, Mia Chen, Jack Karpinski, Michael Ray, Archita Sarin, Christian Garcia, Matthew Lange, Joe Stubbs, Mary P. Thomas
2023 — conf
Introduction to the Minitrack on Software Sustainability: Strategies for Long-Lasting and Usable Software.
HICSS
Sandra Gesing, Maytal Dahan, Joe Stubbs
2023 J jnl
Scalable Scientific Interactive Research Computing With Project Scinco.
Comput. Sci. Eng.
Joe Stubbs, Anagha Jamthe, Nathan Dean Freeman, Mike Packard, Gilbert Curbelo, Cody Hammock
2022 — conf
A Design Pattern for Recoverable Job Management.
PEARC
Richard Cardone, Joe Stubbs, Steve Black, Christian Garcia, Anagha Jamthe, Mike Packard, Smruti Padhy
2022 — conf
Extending Tapis Workflow Management Framework with Elastic Google Cloud Distributed System using CloudyCluster by Omnibond.
PEARC
Eric Lam, Sean B. Cleveland, Richard Cardone, Gwen A. Jacobs, Boyd Wilson, Cole McKnight, Joe Stubbs
2022 — conf
Introduction to the Minitrack on Software Sustainability: Strategies for Long-Lasting and Usable Research Software.
HICSS
Maytal Dahan, Sandra Gesing, Joe Stubbs
2022 J jnl
Prediction of whole-cell transcriptional response with machine learning.
Bioinform.
Mohammed Eslami, Amin Espah Borujeni, Hamed Eramian, Mark Weston, George Zheng, Joshua Urrutia, Carolyn Corbet, Diveena Becker, Paul Maschhoff, Katie Clowers, Alexander Cristofaro, Hamid Doost Hosseini, D. Benjamin Gordon, Yuval Dorfan, Jedediah Singer, Matthew Vaughn, Niall Gaffney, John M. Fonner, Joe Stubbs, Christopher A. Voigt, Enoch Yeung
2022 — conf
Workflow management for scientific research computing with Tapis Workflows: Architecture and Design Decisions behind Software for Research Computing Pipelines.
PEARC
Nathan Dean Freeman, Joe Stubbs, Richard Cardone
2021 — conf
Building Tapis v3 Streams API Support for Real-Time Streaming Data Event-Driven Workflows.
PEARC
Smruti Padhy, Anagha Jamthe, Sean B. Cleveland, Jack A. Smith, Joe Stubbs, Christian Garcia, Michael Packard, Steve Terry, Julia Looney, Richard Cardone, Maytal Dahan, Gwen A. Jacobs
2021 — conf
Common Resource Descriptions for Interoperable Gateway Cyberinfrastructure.
PEARC
Joe Stubbs, Suresh Marru, Daniel Mejia, John-Paul Navarro, Eric Franz, Steve Black, Dimuthu Wannipurage, Sudhakar Pamidighantam, Claire Stirm, Maytal Dahan, Marlon E. Pierce, Michael G. Zentner
2021 — conf
Designing and Proving Properties of the Abaco Autoscaler Using TLA+.
VSTTE
Smruti Padhy, Joe Stubbs
2021 — conf
Introduction to the Minitrack on Software Survivability: Strategies for Long-Lasting and Usable Research Software.
HICSS
Maytal Dahan, Joe Stubbs, Sandra Gesing
2021 — conf
Real-World, Self-Hosted Kubernetes Experience.
PEARC
Michael Packard, Joe Stubbs, Justin A. Drake, Christian Garcia
2021 — conf
Sustainability in the Tapis Framework.
HICSS
Joe Stubbs, Richard Cardone, Sean B. Cleveland, Gwen A. Jacobs, Michael Packard, Anagha Jamthe, Smruti Padhy, Steve Black, Steve Terry, Julia Looney, Joseph Meiring, Maytal Dahan
2021 J jnl
Tapis v3 Streams API: Time-series and data-driven event support in science gateway infrastructure.
Concurr. Comput. Pract. Exp.
Sean B. Cleveland, Anagha Jamthe, Smruti Padhy, Joe Stubbs, Steven Terry, Julia Looney, Richard Cardone, Michael Packard, Maytal Dahan, Gwen A. Jacobs
2021 J jnl
Toward Interoperable Cyberinfrastructure: Common Descriptions for Computational Resources and Applications.
CoRR
Joe Stubbs, Suresh Marru, Daniel Mejia, Daniel S. Katz, Kyle Chard, Maytal Dahan, Marlon E. Pierce, Michael G. Zentner
2020 — conf
Integrating Jupyter into Research Computing Ecosystems: Challenges and Successes in Architecting JupyterHub for Collaborative Research Computing Ecosystems.
PEARC
Joe Stubbs, Julia Looney, Marjo Poindexter, Elias Chalhoub, Gregory J. Zynda, Erik S. Ferlanti, Matthew Vaughn, John M. Fonner, Maytal Dahan
2020 — conf
Lessons Learned from the Chameleon Testbed.
USENIX ATC
Kate Keahey, Jason Anderson, Zhuo Zhen, Pierre Riteau, Paul Ruth, Dan Stanzione, Mert Cevik, Jacob Colleran, Haryadi S. Gunawi, Cody Hammock, Joe Mambretti, Alexander Barnes, François Halbach, Alex Rocha, Joe Stubbs
2020 — conf
Tapis API Development with Python: Best Practices In Scientific REST API Implementation: Experience implementing a distributed Stream API.
PEARC
Sean B. Cleveland, Anagha Jamthe, Smruti Padhy, Joe Stubbs, Michael Packard, Julia Looney, Steve Terry, Richard Cardone, Maytal Dahan, Gwen A. Jacobs
2020 — conf
Tapis early adopter workshop.
PEARC Companion
Joe Stubbs, Gwen A. Jacobs, Maytal Dahan, Sean B. Cleveland, Anagha Jamthe, Steve Black, Richard Cardone, Smruti Padhy, Julia Looney, Joseph Meiring, Mike Packard, Steve Terry
2020 — conf
Toward Interoperable Cyberinfrastructure: Common Descriptions for Computational Resources and Applications.
PEARC
Joe Stubbs, Suresh Marru, Daniel Mejia, Daniel S. Katz, Kyle Chard, Maytal Dahan, Marlon E. Pierce, Michael G. Zentner
2019 — conf
GenApp, Containers and Abaco: Technical Paper.
PEARC
Emre H. Brookes, Joe Stubbs
2019 — conf
SSH-Backed API Performance Case Study.
Bench
Anagha Jamthe, Mike Packard, Joe Stubbs, Gilbert Curbelo, Roseline Shapi, Elias Chalhoub
2018 — conf
Building Science Gateway Infrastructure in the Middle of the Pacific and Beyond: Experiences using the Agave Deployer and Agave Platform to Build Science Gateways.
PEARC
Sean B. Cleveland, Rion Dooley, David Perry, Joe Stubbs, John M. Fonner, Gwen A. Jacobs
2018 — conf
Rapid Development of Scalable, Distributed Computation with Abaco.
IWSG
Joe Stubbs, Matthew Vaughn, Julia Looney
2016 — conf
Endofday: A Container Workflow Engine for Scalable, Reproducible Computation.
IWSG
Joe Stubbs, Stephen Talley, Walter Moreira, Rion Dooley, Ann Stapleton
2015 J jnl
Araport: an application platform for data discovery.
Concurr. Comput. Pract. Exp.
Matthew R. Hanlon, Matthew Vaughn, Stephen A. Mock, Rion Dooley, Walter Moreira, Joe Stubbs, Christopher Town, Jason R. Miller, Vivek Krishnakumar, Erik S. Ferlanti, Eleanor Pence
2014 — conf
Dynamically Provisioning Portable Gateway Infrastructure Using Docker and Agave.
XSEDE
Rion Dooley, Joe Stubbs
2014 — conf
Integrating Science Gateways with XSEDE Security: A Survey of Credential Management Approaches.
XSEDE
Jim Basney, Jeff Gaynor, Suresh Marru, Marlon E. Pierce, Thejaka Amila Kanewala, Rion Dooley, Joe Stubbs
2014 — conf
The MyProxy Gateway.
IWSG
Rion Dooley, Joe Stubbs, Jim Basney
2014 — conf
The arabidopsis information portal: an application platform for data discovery.
GCE@SC
Matthew R. Hanlon, Matthew Vaughn, Stephen A. Mock, Rion Dooley, Walter Moreira, Joe Stubbs, Christopher Town, Jason R. Miller, Vivek Krishnakumar, Erik S. Ferlanti, Eleanor Pence