Jody Clements

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2024 J jnl
NeuronBridge: an intuitive web application for neuronal morphology search across large data sets.
BMC Bioinform.
Jody Clements, Cristian Goina, Philip M. Hubbard, Takashi Kawase, Donald J. Olbris, Hideo Otsuna, Robert Svirskas, Konrad Rokicki
2022 J jnl
neuPrint: An open access tool for EM connectomics.
Frontiers Neuroinformatics
Stephen M. Plaza, Jody Clements, Tom Dolafi, Lowell A. Umayam, Nicole N. Neubarth, Louis K. Scheffer, Stuart E. Berg
2020 J jnl
Estimating the power of sequence covariation for detecting conserved RNA structure.
Bioinform.
Elena Rivas, Jody Clements, Sean R. Eddy
2016 J jnl
The Dfam database of repetitive DNA families.
Nucleic Acids Res.
Robert Hubley, Robert D. Finn, Jody Clements, Sean R. Eddy, Thomas A. Jones, Weidong Bao, Arian F. A. Smit, Travis J. Wheeler
2015 J jnl
HMMER web server: 2015 update.
Nucleic Acids Res.
Robert D. Finn, Jody Clements, William Arndt, Benjamin L. Miller, Travis J. Wheeler, Fabian Schreiber, Alex Bateman, Sean R. Eddy
2014 J jnl
Pfam: the protein families database.
Nucleic Acids Res.
Robert D. Finn, Alex Bateman, Jody Clements, Penelope Coggill, Ruth Y. Eberhardt, Sean R. Eddy, Andreas Heger, Kirstie Hetherington, Liisa Holm, Jaina Mistry, Erik L. L. Sonnhammer, John G. Tate, Marco Punta
2014 J jnl
Skylign: a tool for creating informative, interactive logos representing sequence alignments and profile hidden Markov models.
BMC Bioinform.
Travis J. Wheeler, Jody Clements, Robert D. Finn
2014 J jnl
iPfam: a database of protein family and domain interactions found in the Protein Data Bank.
Nucleic Acids Res.
Robert D. Finn, Benjamin L. Miller, Jody Clements, Alex Bateman
2013 J jnl
Dfam: a database of repetitive DNA based on profile hidden Markov models.
Nucleic Acids Res.
Travis J. Wheeler, Jody Clements, Sean R. Eddy, Robert Hubley, Thomas A. Jones, Jerzy Jurka, Arian F. A. Smit, Robert D. Finn
2012 J jnl
The Pfam protein families database.
Nucleic Acids Res.
Marco Punta, Penny C. Coggill, Ruth Y. Eberhardt, Jaina Mistry, John G. Tate, Chris Boursnell, Ningze Pang, Kristoffer Forslund, Goran Ceric, Jody Clements, Andreas Heger, Liisa Holm, Erik L. L. Sonnhammer, Sean R. Eddy, Alex Bateman, Robert D. Finn
2011 J jnl
HMMER web server: interactive sequence similarity searching.
Nucleic Acids Res.
Robert D. Finn, Jody Clements, Sean R. Eddy
2007 J jnl
ProServer: a simple, extensible Perl DAS server.
Bioinform.
Robert D. Finn, James W. Stalker, David K. Jackson, Eugene Kulesha, Jody Clements, Roger Pettett