Joaquín Tárraga

25 papers C 1Journal 23Unranked 1
YearRankTypeTitle / Venue / Authors
2018 J jnl
A framework for genomic sequencing on clusters of multicore and manycore processors.
Int. J. High Perform. Comput. Appl.
Héctor Martínez, Sergio Barrachina, Maribel Castillo, Joaquín Tárraga, Ignacio Medina, Joaquín Dopazo, Enrique S. Quintana-Ortí
2017 J jnl
A new parallel pipeline for DNA methylation analysis of long reads datasets.
BMC Bioinform.
Ricardo Olanda, Mariano Pérez, Juan M. Orduña, Joaquín Tárraga, Joaquín Dopazo
2017 J jnl
HGVA: the Human Genome Variation Archive.
Nucleic Acids Res.
Javier López, Jacobo Coll, Matthias Haimel, Swaathi Kandasamy, Joaquín Tárraga, Pedro Furió-Tarí, Wasim Bari, Marta Bleda, Antonio Rueda, Stefan Gräf, Augusto Rendon, Joaquín Dopazo, Ignacio Medina
2017 J jnl
VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy.
BMC Bioinform.
José M. Juanes, Asunción Gallego, Joaquín Tárraga, Felipe Javier Chaves, Pablo Marín-García, Ignacio Medina, Vicente Arnau, Joaquín Dopazo
2016 J jnl
HPG pore: an efficient and scalable framework for nanopore sequencing data.
BMC Bioinform.
Joaquín Tárraga, Asunción Gallego, Vicente Arnau, Ignacio Medina, Joaquín Dopazo
2015 J jnl
A parallel and sensitive software tool for methylation analysis on multicore platforms.
Bioinform.
Joaquín Tárraga, Mariano Pérez, Juan M. Orduña, José Duato, Ignacio Medina, Joaquín Dopazo
2015 J jnl
Babelomics 5.0: functional interpretation for new generations of genomic data.
Nucleic Acids Res.
Roberto Alonso, Francisco Salavert, Francisco García-García, José Carbonell-Caballero, Marta Bleda, Luz Garcia-Alonso, Alba Sanchis-Juan, Daniel Perez-Gil, Pablo Marín-García, Rubén Sánchez, Cankut Çubuk, Marta R. Hidalgo, Alicia Amadoz, Rosa D. Hernansaiz-Ballesteros, Alejandro Alemán, Joaquín Tárraga, David Montaner, Ignacio Medina, Joaquín Dopazo
2015 J jnl
Concurrent and Accurate Short Read Mapping on Multicore Processors.
IEEE ACM Trans. Comput. Biol. Bioinform.
Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí
2015 — conf
Scalable RNA Sequencing on Clusters of Multicore Processors.
TrustCom/BigDataSE/ISPA (3)
Héctor Martínez, Sergio Barrachina, Maribel Castillo, Joaquín Tárraga, Ignacio Medina, Joaquín Dopazo, Enrique S. Quintana-Ortí
2014 J jnl
Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.
Bioinform.
Joaquín Tárraga, Vicente Arnau, Héctor Martínez, Raul Moreno, Diego Cazorla, José Salavert Torres, Ignacio Blanquer Espert, Joaquín Dopazo, Ignacio Medina
2013 C conf
A dynamic pipeline for RNA sequencing on multicore processors.
EuroMPI
Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí
2013 J jnl
Concurrent and Accurate RNA Sequencing on Multicore Platforms
CoRR
Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí
2012 J jnl
CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources.
Nucleic Acids Res.
Marta Bleda, Joaquín Tárraga, Alejandro de María, Francisco Salavert, Luz Garcia-Alonso, Matilde Celma, Ainoha Martín, Joaquín Dopazo, Ignacio Medina
2012 J jnl
Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform.
IEEE ACM Trans. Comput. Biol. Bioinform.
José Salavert Torres, Ignacio Blanquer Espert, Andrés Tomás Dominguez, Vicente Hernández, Ignacio Medina, Joaquín Tárraga, Joaquín Dopazo
2011 J jnl
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.
Nucleic Acids Res.
Rubén Sánchez, François Serra, Joaquín Tárraga, Ignacio Medina, José Carbonell, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo
2010 J jnl
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.
Nucleic Acids Res.
Ignacio Medina, José Carbonell, Luis Pulido, Sara C. Madeira, Stefan Götz, Ana Conesa, Joaquín Tárraga, Alberto D. Pascual-Montano, Rubén Nogales-Cadenas, Javier Santoyo, Francisco García-García, Martina Marbà, David Montaner, Joaquín Dopazo
2009 J jnl
Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies.
Nucleic Acids Res.
Ignacio Medina, David Montaner, Nuria Bonifaci, Miguel Angel Pujana, José Carbonell, Joaquín Tárraga, Fátima Al-Shahrour, Joaquín Dopazo
2008 J jnl
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments.
Nucleic Acids Res.
Fátima Al-Shahrour, José Carbonell, Pablo Minguez, Stefan Götz, Ana Conesa, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo
2008 J jnl
GEPAS, a web-based tool for microarray data analysis and interpretation.
Nucleic Acids Res.
Joaquín Tárraga, Ignacio Medina, José Carbonell, Jaime Huerta-Cepas, Pablo Minguez, Eva Alloza, Fátima Al-Shahrour, Susana Vegas-Azcárate, Stefan Götz, Pablo Escobar, Francisco García-García, Ana Conesa, David Montaner, Joaquín Dopazo
2007 J jnl
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments.
Nucleic Acids Res.
Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, Ignacio Medina, Eva Alloza, David Montaner, Joaquín Dopazo
2007 J jnl
ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling.
Nucleic Acids Res.
Lucía Conde, David Montaner, Jordi Burguet-Castell, Joaquín Tárraga, Ignacio Medina, Fátima Al-Shahrour, Joaquín Dopazo
2007 J jnl
Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics.
Nucleic Acids Res.
Joaquín Tárraga, Ignacio Medina, Leonardo Arbiza, Jaime Huerta-Cepas, Toni Gabaldón, Joaquín Dopazo, Hernán Dopazo
2007 J jnl
Prophet, a web-based tool for class prediction using microarray data.
Bioinform.
Ignacio Medina, David Montaner, Joaquín Tárraga, Joaquín Dopazo
2006 J jnl
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.
Nucleic Acids Res.
Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, David Montaner, Eva Alloza, Juan M. Vaquerizas, Lucía Conde, Christian Blaschke, Javier Vera, Joaquín Dopazo
2006 J jnl
Next station in microarray data analysis: GEPAS.
Nucleic Acids Res.
David Montaner, Joaquín Tárraga, Jaime Huerta-Cepas, Jordi Burguet-Castell, Juan M. Vaquerizas, Lucía Conde, Pablo Minguez, Javier Vera, Sach Mukherjee, Joan Valls, Miguel A. G. Pujana, Eva Alloza, Javier Herrero, Fátima Al-Shahrour, Joaquín Dopazo