Joanne Berghout

13 papers Misc 6Journal 7
YearRankTypeTitle / Venue / Authors
2021 J jnl
'Single-subject studies'-derived analyses unveil altered biomechanisms between very small cohorts: implications for rare diseases.
Bioinform.
Dillon Aberasturi, Nima Pouladi, Samir Rachid Zaim, Colleen Kenost, Joanne Berghout, Walter W. Piegorsch, Yves A. Lussier
2021 Misc conf
Computational Challenges and Artificial Intelligence in Precision Medicine.
PSB
Olga Afanasiev, Joanne Berghout, Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jonathan H. Chen, Roxana Daneshjou, Lukasz Kidzinski
2020 J jnl
Correction to: binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions.
BMC Bioinform.
Samir Rachid Zaim, Colleen Kenost, Joanne Berghout, Wesley Chiu, Liam Wilson, Hao Helen Zhang, Yves A. Lussier
2020 J jnl
binomialRF: interpretable combinatoric efficiency of random forests to identify biomarker interactions.
BMC Bioinform.
Samir Rachid Zaim, Colleen Kenost, Joanne Berghout, Wesley Chiu, Liam Wilson, Hao Helen Zhang, Yves A. Lussier
2019 J jnl
Developing a 'personalome' for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes.
Briefings Bioinform.
Francesca Vitali, Qike Li, A. Grant Schissler, Joanne Berghout, Colleen Kenost, Yves A. Lussier
2019 Misc conf
Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes.
AMIA
Qike Li, Samir Rachid Zaim, Dillon Aberasturi, Joanne Berghout, Haiquan Li, Francesca Vitali, Colleen Kenost, Hao Helen Zhang, Yves A. Lussier
2019 Misc conf
Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms.
PSB
Francesca Vitali, Joanne Berghout, Jung-Wei Fan, Jianrong Li, Qike Li, Haiquan Li, Yves A. Lussier
2019 Misc conf
Reading between the genes: interpreting non-coding DNA in high-throughput.
PSB
Joanne Berghout, Yves A. Lussier, Francesca Vitali, Martha L. Bulyk, Maricel G. Kann, Jason H. Moore
2018 Misc conf
Session Introduction.
PSB
Yves A. Lussier, Joanne Berghout, Francesca Vitali, Kenneth S. Ramos, Maricel G. Kann, Jason H. Moore
2018 Misc conf
Single subject transcriptome analysis to identify functionally signed gene set or pathway activity.
PSB
Joanne Berghout, Qike Li, Nima Pouladi, Jianrong Li, Yves A. Lussier
2017 J jnl
A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations.
J. Am. Medical Informatics Assoc.
Vincent Gardeux, Joanne Berghout, Ikbel Achour, A. Grant Schissler, Qike Li, Colleen Kenost, Jianrong Li, Yuan Shang, Anthony Bosco, Donald Saner, Marilyn J. Halonen, Daniel Jackson, Haiquan Li, Fernando D. Martinez, Yves A. Lussier
2017 J jnl
kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects.
J. Biomed. Informatics
Qike Li, A. Grant Schissler, Vincent Gardeux, Joanne Berghout, Ikbel Achour, Colleen Kenost, Haiquan Li, Hao Helen Zhang, Yves A. Lussier
2014 J jnl
The mouse Gene Expression Database (GXD): 2014 update.
Nucleic Acids Res.
Constance M. Smith, Jacqueline H. Finger, Terry F. Hayamizu, Ingeborg J. McCright, Jingxia Xu, Joanne Berghout, Jeff Campbell, Lori E. Corbani, Kim L. Forthofer, Pete J. Frost, Dave Miers, David R. Shaw, Kevin R. Stone, Janan T. Eppig, James A. Kadin, Joel E. Richardson, Martin Ringwald