Joanna Trylska

13 papers Journal 12Unranked 1
YearRankTypeTitle / Venue / Authors
2023 J jnl
Varying molecular interactions explain aspects of crowder-dependent enzyme function of a viral protease.
PLoS Comput. Biol.
Natalia Ostrowska, Michael Feig, Joanna Trylska
2021 J jnl
Correction: Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli.
PLoS Comput. Biol.
Tomasz Pienko, Joanna Trylska
2020 J jnl
Extracellular loops of BtuB facilitate transport of vitamin B12 through the outer membrane of E. coli.
PLoS Comput. Biol.
Tomasz Pienko, Joanna Trylska
2019 J jnl
Computational Methods Used to Explore Transport Events in Biological Systems.
J. Chem. Inf. Model.
Tomasz Pienko, Joanna Trylska
2016 J jnl
Structural and energetic comparison of the complexes of aminoglycosides with the model of the ribosomal A-site.
RAIRO Oper. Res.
Marta Kulik, Joanna Trylska
2011 J jnl
Brownian dynamics simulations on CPU and GPU with BD_BOX.
J. Comput. Chem.
Maciej Dlugosz, Pawel Zielinski, Joanna Trylska
2011 — conf
Genetic Algorithm Optimization of Force Field Parameters: Application to a Coarse-Grained Model of RNA.
EvoBio
Filip Leonarski, Fabio Trovato, Valentina Tozzini, Joanna Trylska
2011 J jnl
Understanding the Origins of Bacterial Resistance to Aminoglycosides through Molecular Dynamics Mutational Study of the Ribosomal A-Site.
PLoS Comput. Biol.
Julia Romanowska, James Andrew McCammon, Joanna Trylska
2009 J jnl
RedMD - Reduced molecular dynamics package.
J. Comput. Chem.
Adam Górecki, Marcin Szypowski, Maciej Dlugosz, Joanna Trylska
2009 J jnl
Search for Novel Aminoglycosides by Combining Fragment-Based Virtual Screening and 3D-QSAR Scoring.
J. Chem. Inf. Model.
Piotr Setny, Joanna Trylska
2008 J jnl
Coarse-grained force field for the nucleosome from self-consistent multiscaling.
J. Comput. Chem.
Karine Voltz, Joanna Trylska, Valentina Tozzini, Vandana Kurkal-Siebert, Jörg Langowski, Jeremy C. Smith
2008 J jnl
The Poisson-Boltzmann model for tRNA: Assessment of the calculation set-up and ionic concentration cutoff.
J. Comput. Chem.
Magdalena Gruziel, Pawel Grochowski, Joanna Trylska
2006 J jnl
Dependency Map of Proteins in the Small Ribosomal Subunit.
PLoS Comput. Biol.
Kay Hamacher, Joanna Trylska, James Andrew McCammon