Joana P. Gonçalves

13 papers Journal 11Unranked 2
YearRankTypeTitle / Venue / Authors
2025 J jnl
LAVA: Explainability for Unsupervised Latent Embeddings.
CoRR
Ivan Stresec, Joana P. Gonçalves
2024 J jnl
DCAST: Diverse Class-Aware Self-Training Mitigates Selection Bias for Fairer Learning.
CoRR
Yasin Tepeli, Joana P. Gonçalves
2024 J jnl
ELISL: early-late integrated synthetic lethality prediction in cancer.
Bioinform.
Yasin Tepeli, Colm Seale, Joana P. Gonçalves
2024 J jnl
Metric-DST: Mitigating Selection Bias Through Diversity-Guided Semi-Supervised Metric Learning.
CoRR
Yasin Tepeli, Mathijs de Wolf, Joana P. Gonçalves
2022 J jnl
Overcoming selection bias in synthetic lethality prediction.
Bioinform.
Colm Seale, Yasin Tepeli, Joana P. Gonçalves
2014 J jnl
LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification.
IEEE ACM Trans. Comput. Biol. Bioinform.
Joana P. Gonçalves, Sara C. Madeira
2014 J jnl
Predicting disease associations via biological network analysis.
BMC Bioinform.
Kai Sun, Joana P. Gonçalves, Chris Larminie, Natasa Przulj
2013 — conf
Heuristic approaches for time-lagged biclustering.
BIOKDD
Joana P. Gonçalves, Sara C. Madeira
2012 J jnl
AliBiMotif: Integrating alignment and biclustering to unravel transcription factor binding sites in DNA sequences.
Int. J. Data Min. Bioinform.
Joana P. Gonçalves, Yves Moreau, Sara C. Madeira
2011 J jnl
PINTA: a web server for network-based gene prioritization from expression data.
Nucleic Acids Res.
Daniela Nitsch, Léon-Charles Tranchevent, Joana P. Gonçalves, Josef Korbinian Vogt, Sara C. Madeira, Yves Moreau
2011 J jnl
TFRank: network-based prioritization of regulatory associations underlying transcriptional responses.
Bioinform.
Joana P. Gonçalves, Alexandre P. Francisco, Nuno P. Mira, Miguel C. Teixeira, Isabel Sá-Correia, Arlindo L. Oliveira, Sara C. Madeira
2010 J jnl
Candidate gene prioritization by network analysis of differential expression using machine learning approaches.
BMC Bioinform.
Daniela Nitsch, Joana P. Gonçalves, Fabian Ojeda, Bart De Moor, Yves Moreau
2010 — conf
Network-Based Disease Candidate Gene Prioritization: Towards Global Diffusion in Heterogeneous Association Networks.
NyNaK
Joana P. Gonçalves, Sara C. Madeira, Yves Moreau