Joan Segura

22 papers Journal 22
YearRankTypeTitle / Venue / Authors
2026 J jnl
Multi-scale structural similarity embedding search across entire proteomes.
Bioinform.
Joan Segura, Rubén Sánchez García, Sebastian Bittrich, Yana Rose, Stephen K. Burley, Jose M. Duarte
2024 J jnl
RCSB protein Data Bank: exploring protein 3D similarities via comprehensive structural alignments.
Bioinform.
Sebastian Bittrich, Joan Segura, Jose M. Duarte, Stephen K. Burley, Yana Rose
2023 J jnl
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning.
Nucleic Acids Res.
Stephen K. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Henry Chao, Li Chen, Paul A. Craig, Gregg V. Crichlow, Kenneth Dalenberg, Jose M. Duarte, Shuchismita Dutta, Maryam Fayazi, Zukang Feng, Justin W. Flatt, Sai Ganesan, Sutapa Ghosh, David S. Goodsell, Rachel Kramer Green, Vladimir Guranovic, Jeremy Henry, Brian P. Hudson, Igor Khokhriakov, Catherine L. Lawson, Yuhe Liang, Robert Lowe, Ezra Peisach, Irina Persikova, Dennis W. Piehl, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Brinda Vallat, Maria Voigt, Ben M. Webb, John D. Westbrook, Shamara Whetstone, Jasmine Young, Arthur O. Zalevsky, Christine Zardecki
2023 J jnl
RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins.
Frontiers Bioinform.
Joan Segura, Yana Rose, Chunxiao Bi, Jose M. Duarte, Stephen K. Burley, Sebastian Bittrich
2022 J jnl
RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies.
Bioinform.
Joan Segura, Yana Rose, Sebastian Bittrich, Stephen K. Burley, Jose M. Duarte
2022 J jnl
RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB.
Bioinform.
Sebastian Bittrich, Yana Rose, Joan Segura, Robert Lowe, John D. Westbrook, Jose M. Duarte, Stephen K. Burley
2021 J jnl
RCSB Protein Data Bank 1D tools and services.
Bioinform.
Joan Segura, Yana Rose, John D. Westbrook, Stephen K. Burley, Jose M. Duarte
2021 J jnl
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences.
Nucleic Acids Res.
Stephen K. Burley, Charmi Bhikadiya, Chunxiao Bi, Sebastian Bittrich, Li Chen, Gregg V. Crichlow, Cole H. Christie, Kenneth Dalenberg, Luigi Di Costanzo, Jose M. Duarte, Shuchismita Dutta, Zukang Feng, Sai Ganesan, David S. Goodsell, Sutapa Ghosh, Rachel Kramer Green, Vladimir Guranovic, Dmytro Guzenko, Brian P. Hudson, Catherine L. Lawson, Yuhe Liang, Robert Lowe, Harry Namkoong, Ezra Peisach, Irina Persikova, Christopher Randle, Alexander S. Rose, Yana Rose, Andrej Sali, Joan Segura, Monica Sekharan, Chenghua Shao, Yi-Ping Tao, Maria Voigt, John D. Westbrook, Jasmine Young, Christine Zardecki, Marina Zhuravleva
2019 J jnl
3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variations.
Bioinform.
Joan Segura, Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo
2019 J jnl
BIPSPI: a method for the prediction of partner-specific protein-protein interfaces.
Bioinform.
Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo, Joan Segura
2019 J jnl
Validation of electron microscopy initial models via small angle X-ray scattering curves.
Bioinform.
Amaya Jiménez, Slavica Jonic, Tomás Majtner, Joaquín Otón, Jose Luis Vilas, David Maluenda, Javier Mota, Erney Ramírez-Aportela, Marta Martínez, Yaiza Rancel, Joan Segura, Rubén Sánchez García, Roberto Melero, Laura del Cano, Pablo Conesa, Lars Skjaerven, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano
2017 J jnl
3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structures.
Bioinform.
Joan Segura, Rubén Sánchez García, Marta Martínez, Jesús Cuenca Alba, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, José María Carazo
2015 J jnl
Using neighborhood cohesiveness to infer interactions between protein domains.
Bioinform.
Joan Segura, Carlos Oscar Sánchez Sorzano, Jesús Cuenca Alba, Patrick Aloy, José María Carazo
2014 J jnl
Frag'r'Us: knowledge-based sampling of protein backbone conformations for
Bioinform.
Jaume Bonet, Joan Segura, Joan Planas-Iglesias, Baldomero Oliva, Narcis Fernandez-Fuentes
2012 J jnl
A holistic
Bioinform.
Joan Segura, Pamela F. Jones, Narcis Fernandez-Fuentes
2012 J jnl
CAPS-
Nucleic Acids Res.
Joan Segura, Baldomero Oliva, Narcis Fernandez-Fuentes
2012 J jnl
Integrating human and murine anatomical gene expression data for improved comparisons.
Bioinform.
Natalia Jiménez-Lozano, Joan Segura, José Ramón Macías, Juanjo Vega, José María Carazo
2011 J jnl
Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi Diagrams.
BMC Bioinform.
Joan Segura, Pamela F. Jones, Narcis Fernandez-Fuentes
2011 J jnl
PCRPi
Nucleic Acids Res.
Joan Segura, Narcis Fernandez-Fuentes
2009 J jnl
Flexible structural protein alignment by a sequence of local transformations.
Bioinform.
Jairo Rocha, Joan Segura, Richard C. Wilson, Swagata Dasgupta
2009 J jnl
aGEM: an integrative system for analyzing spatial-temporal gene-expression information.
Bioinform.
Natalia Jiménez-Lozano, Joan Segura, José Ramón Macías, Juanjo Vega, José María Carazo
2006 J jnl
Compression ratios based on the Universal Similarity Metric still yield protein distances far from CATH distances
CoRR
Jairo Rocha, Francesc Rosselló, Joan Segura