Joakim Lundeberg

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2025 J jnl
Generative vector search to improve pathology foundation models across multimodal vision-language tasks.
CoRR
Markus Ekvall, Ludvig Bergenstråhle, Patrick Truong, Ben Murrell, Joakim Lundeberg
2025 J jnl
Surveying the molecular landscape of pediatric brain tumors via spatially resolved transcriptomics.
Briefings Bioinform.
Javier Escudero Morlanes, Timo-Pekka Lehto, Ludvig Larsson, Leire Alonso Galicia, Annelie Mollbrink, Alia Shamikh, Elisa Basmaci, Gabriela Prochazka, Teresita Diaz de Ståhl, Johanna Sandgren, Fulya Taylan, Bianca Tesi, Ann Nordgren, Andrew Erickson, Alastair D. Lamb, Klas Blomgren, Monica Nistér, Joakim Lundeberg, Reza Mirzazadeh, Linda Kvastad
2023 J jnl
Learning Stationary Markov Processes with Contrastive Adjustment.
CoRR
Ludvig Bergenstråhle, Jens Lagergren, Joakim Lundeberg
2021 J jnl
sepal: identifying transcript profiles with spatial patterns by diffusion-based modeling.
Bioinform.
Alma Andersson, Joakim Lundeberg
2020 J jnl
SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation.
BMC Bioinform.
Joseph Bergenstråhle, Ludvig Bergenstråhle, Joakim Lundeberg
2019 J jnl
ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets.
Bioinform.
José Fernández Navarro, Joakim Lundeberg, Patrik L. Ståhl
2018 J jnl
ST Spot Detector: a web-based application for automatic spot and tissue detection for spatial Transcriptomics image datasets.
Bioinform.
Kim Wong, José Fernández Navarro, Ludvig Bergenstråhle, Patrik L. Ståhl, Joakim Lundeberg
2017 J jnl
ST Pipeline: an automated pipeline for spatial mapping of unique transcripts.
Bioinform.
José Fernández Navarro, Joel Sjöstrand, Fredrik Salmén, Joakim Lundeberg, Patrik L. Ståhl
2014 J jnl
BESST - Efficient scaffolding of large fragmented assemblies.
BMC Bioinform.
Kristoffer Sahlin, Francesco Vezzi, Björn Nystedt, Joakim Lundeberg, Lars Arvestad
2012 J jnl
Improved gap size estimation for scaffolding algorithms.
Bioinform.
Kristoffer Sahlin, Nathaniel Street, Joakim Lundeberg, Lars Arvestad
2010 J jnl
Classification of DNA sequences using Bloom filters.
Bioinform.
Henrik Stranneheim, Max Käller, Tobias Allander, Björn Andersson, Lars Arvestad, Joakim Lundeberg