Joakim Lindblad

105 papers A* 1B 6C 12Misc 4Journal 43Unranked 37

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	A Comparison of Deep Learning Methods for Cell Detection in Digital Cytology. SCIA (2) Marco Acerbis, Natasa Sladoje, Joakim Lindblad
2025	J	`jnl`	A Comparison of Deep Learning Methods for Cell Detection in Digital Cytology. CoRR Marco Acerbis, Natasa Sladoje, Joakim Lindblad
2025	J	`jnl`	From Cells to Survival: Hierarchical Analysis of Cell Inter-Relations in Multiplex Microscopy for Lung Cancer Prognosis. CoRR Olle Edgren Schüllerqvist, Jens Baumann, Joakim Lindblad, Love Nordling, Artur Mezheyeuski, Patrick Micke, Natasa Sladoje
2025	J	`jnl`	Isolated Channel Vision Transformers: From Single-Channel Pretraining to Multi-Channel Finetuning. CoRR Wenyi Lian, Joakim Lindblad, Patrick Micke, Natasa Sladoje
2025	J	`jnl`	Learn2Reg 2024: New Benchmark Datasets Driving Progress on New Challenges. CoRR Lasse Hansen, Wiebke Heyer, Christoph Großbröhmer, Frederic Madesta, Thilo Sentker, Jiazheng Wang, Yuxi Zhang, Hang Zhang, Min Liu, Junyi Wang, Xi Zhu, Yuhua Li, Liwen Wang, Daniil Morozov, Nazim Haouchine, Joel Honkamaa, Pekka Marttinen, Yichao Zhou, Zuopeng Tan, Zhuoyuan Wang, Yi Wang, Hongchao Zhou, Shunbo Hu, Yi Zhang, Qian Tao, Lukas Förner, Thomas Wendler, Bailiang Jian, Christian Wachinger, Jin Kim, Dan Ruan, Marek Wodzinski, Henning Müller, Tony C. W. Mok, Xi Jia, Jinming Duan, Mikael Brudfors, Seyed-Ahmad Ahmadi, Yunzheng Zhu, William Hsu, Tina Kapur, William M. Wells, Alexandra J. Golby, Aaron Carass, Harrison X. Bai, Yihao Liu, Perrine Paul-Gilloteaux, Joakim Lindblad, Natasa Sladoje, Andreas Walter, Junyu Chen, Reuben Dorent, Alessa Hering, Mattias P. Heinrich
2025	J	`jnl`	Let it shine: Autofluorescence of Papanicolaou-stain improves AI-based cytological oral cancer detection. Comput. Biol. Medicine Wenyi Lian, Joakim Lindblad, Christina Runow Stark, Jan-Michael Hirsch, Natasa Sladoje
2025	J	`jnl`	SLAM-AGS: Slide-Label Aware Multi-Task Pretraining Using Adaptive Gradient Surgery in Computational Cytology. CoRR Marco Acerbis, Swarnadip Chatterjee, Christophe Avenel, Joakim Lindblad
2025	J	`jnl`	UpStory: the uppsala storytelling dataset. Frontiers Robotics AI Marc Fraile, Natalia Calvo-Barajas, Anastasia Sophia Apeiron, Giovanna Varni, Joakim Lindblad, Natasa Sladoje, Ginevra Castellano
2024	—	`conf`	Are We Friends? End-to-End Prediction of Child Rapport in Guided Play. ECCV Workshops (15) Marc Fraile, Giovanna Varni, Joakim Lindblad, Natasa Sladoje, Ginevra Castellano
2024	—	`conf`	Detection of Extremely Sparse Key Instances in Whole Slide Cytology Images via Self-supervised One-class Representation Learning. ICPR (27) Swarnadip Chatterjee, Orçun Göksel, Natasa Sladoje, Joakim Lindblad
2024	J	`jnl`	Let it shine: Autofluorescence of Papanicolaou-stain improves AI-based cytological oral cancer detection. CoRR Wenyi Lian, Joakim Lindblad, Christina Runow Stark, Jan-Michael Hirsch, Natasa Sladoje
2024	J	`jnl`	UpStory: the Uppsala Storytelling dataset. CoRR Marc Fraile, Natalia Calvo-Barajas, Anastasia Sophia Apeiron, Giovanna Varni, Joakim Lindblad, Natasa Sladoje, Ginevra Castellano
2023	Misc	`conf`	Can Representation Learning for Multimodal Image Registration be Improved by Supervision of Intermediate Layers? IbPRIA Elisabeth Wetzer, Joakim Lindblad, Natasa Sladoje
2023	J	`jnl`	Can representation learning for multimodal image registration be improved by supervision of intermediate layers? CoRR Elisabeth Wetzer, Joakim Lindblad, Natasa Sladoje
2023	—	`conf`	Contrastive Learning of Equivariant Image Representations for Multimodal Deformable Registration. ISBI Love Nordling, Johan Öfverstedt, Joakim Lindblad, Natasa Sladoje
2022	J	`jnl`	Cross-Modality Sub-Image Retrieval using Contrastive Multimodal Image Representations. CoRR Eva Breznik, Elisabeth Wetzer, Joakim Lindblad, Natasa Sladoje
2022	—	`conf`	Cross-Sim-NGF: FFT-Based Global Rigid Multimodal Alignment of Image Volumes Using Normalized Gradient Fields. WBIR Johan Öfverstedt, Joakim Lindblad, Natasa Sladoje
2022	B	`conf`	End-to-End Learning and Analysis of Infant Engagement During Guided Play: Prediction and Explainability. ICMI Marc Fraile, Christine Fawcett, Joakim Lindblad, Natasa Sladoje, Ginevra Castellano
2022	B	`conf`	End-to-end Multiple Instance Learning with Gradient Accumulation. IEEE Big Data Axel Andersson, Nadezhda Koriakina, Natasa Sladoje, Joakim Lindblad
2022	J	`jnl`	End-to-end Multiple Instance Learning with Gradient Accumulation. CoRR Axel Andersson, Nadezhda Koriakina, Natasa Sladoje, Joakim Lindblad
2022	J	`jnl`	Fast computation of mutual information in the frequency domain with applications to global multimodal image alignment. Pattern Recognit. Lett. Johan Öfverstedt, Joakim Lindblad, Natasa Sladoje
2022	J	`jnl`	Guest Editorial: Discrete Geometry and Mathematical Morphology. J. Math. Imaging Vis. Filip Malmberg, Joakim Lindblad, Natasa Sladoje
2022	J	`jnl`	Oral cancer detection and interpretation: Deep multiple instance learning versus conventional deep single instance learning. CoRR Nadezhda Koriakina, Natasa Sladoje, Vladimir Basic, Joakim Lindblad
2022	—	`conf`	Rotation-Equivariant Semantic Instance Segmentation on Biomedical Images. MIUA Karl Bengtsson Bernander, Joakim Lindblad, Robin Strand, Ingela Nyström
2021	—	`conf`	Automatic analysis of infant engagement during play: An end-to-end learning and Explainable AI pilot experiment. ICMI Companion Marc Fraile, Joakim Lindblad, Christine Fawcett, Natasa Sladoje, Ginevra Castellano
2021	J	`jnl`	Cross-Sim-NGF: FFT-Based Global Rigid Multimodal Alignment of Image Volumes using Normalized Gradient Fields. CoRR Johan Öfverstedt, Joakim Lindblad, Natasa Sladoje
2021	J	`jnl`	CytoBrowser: a browser-based collaborative annotation platform for whole slide images. F1000Research Christopher Rydell, Joakim Lindblad
2021	—	`ed.`	Discrete Geometry and Mathematical Morphology - First International Joint Conference, DGMM 2021, Uppsala, Sweden, May 24-27, 2021, Proceedings DGMM Joakim Lindblad, Filip Malmberg, Natasa Sladoje
2021	J	`jnl`	Fast computation of mutual information in the frequency domain with applications to global multimodal image alignment. CoRR Johan Öfverstedt, Joakim Lindblad, Natasa Sladoje
2021	J	`jnl`	Is Image-to-Image Translation the Panacea for Multimodal Image Registration? A Comparative Study. CoRR Jiahao Lu, Johan Öfverstedt, Joakim Lindblad, Natasa Sladoje
2021	C	`conf`	Replacing Data Augmentation with Rotation-Equivariant CNNs in Image-Based Classification of Oral Cancer. CIARP Karl Bengtsson Bernander, Joakim Lindblad, Robin Strand, Ingela Nyström
2021	C	`conf`	The Effect of Within-Bag Sampling on End-to-End Multiple Instance Learning. ISPA Nadezhda Koriakina, Natasa Sladoje, Joakim Lindblad
2020	—	`conf`	A Deep Learning Based Pipeline for Efficient Oral Cancer Screening on Whole Slide Images. ICIAR (2) Jiahao Lu, Natasa Sladoje, Christina Runow Stark, Eva Darai Ramqvist, Jan-Michael Hirsch, Joakim Lindblad
2020	A*	`conf`	CoMIR: Contrastive Multimodal Image Representation for Registration. NeurIPS Nicolas Pielawski, Elisabeth Wetzer, Johan Öfverstedt, Jiahao Lu, Carolina Wählby, Joakim Lindblad, Natasa Sladoje
2020	J	`jnl`	CoMIR: Contrastive Multimodal Image Representation for Registration. CoRR Nicolas Pielawski, Elisabeth Wetzer, Johan Öfverstedt, Jiahao Lu, Carolina Wählby, Joakim Lindblad, Natasa Sladoje
2020	J	`jnl`	Generalised deep learning framework for HEp-2 cell recognition using local binary pattern maps. IET Image Process. Buda Bajic, Tomás Majtner, Joakim Lindblad, Natasa Sladoje
2020	J	`jnl`	INSPIRE: Intensity and Spatial Information-Based Deformable Image Registration. CoRR Johan Öfverstedt, Joakim Lindblad, Natasa Sladoje
2020	J	`jnl`	Stochastic Distance Transform: Theory, Algorithms and Applications. J. Math. Imaging Vis. Johan Öfverstedt, Joakim Lindblad, Natasa Sladoje
2020	—	`conf`	When Texture Matters: Texture-Focused Cnns Outperform General Data Augmentation and Pretraining in Oral Cancer Detection. ISBI Elisabeth Wetzer, Jo Gay, Hugo Harlin, Joakim Lindblad, Natasa Sladoje
2019	J	`jnl`	A Deep Learning based Pipeline for Efficient Oral Cancer Screening on Whole Slide Images. CoRR Jiahao Lu, Natasa Sladoje, Christina Runow Stark, Eva Darai Ramqvist, Jan-Michael Hirsch, Joakim Lindblad
2019	J	`jnl`	Fast and Robust Symmetric Image Registration Based on Distances Combining Intensity and Spatial Information. IEEE Trans. Image Process. Johan Öfverstedt, Joakim Lindblad, Natasa Sladoje
2019	—	`conf`	On the Effectiveness of Generative Adversarial Networks as HEp-2 Image Augmentation Tool. SCIA Tomás Majtner, Buda Bajic, Joakim Lindblad, Natasa Sladoje, Victoria Blanes-Vidal, Esmaeil S. Nadimi
2019	J	`jnl`	Sparsity promoting super-resolution coverage segmentation by linear unmixing in presence of blur and noise. J. Electronic Imaging Buda Bajic, Joakim Lindblad, Natasa Sladoje
2019	—	`conf`	Stochastic Distance Transform. DGCI Johan Öfverstedt, Joakim Lindblad, Natasa Sladoje
2018	—	`conf`	Denoising of short exposure transmission electron microscopy images for ultrastructural enhancement. ISBI Buda Bajic, Amit Suveer, Anindya Gupta, Ivana Pepic, Joakim Lindblad, Natasa Sladoje, Ida-Maria Sintorn
2018	J	`jnl`	Ensemble of Convolutional Neural Networks for Dermoscopic Images Classification. CoRR Tomás Majtner, Buda Bajic, Sule Yildirim, Jon Yngve Hardeberg, Joakim Lindblad, Natasa Sladoje
2018	J	`jnl`	Fast and Robust Symmetric Image Registration Based on Intensity and Spatial Information. CoRR Johan Öfverstedt, Joakim Lindblad, Natasa Sladoje
2018	J	`jnl`	Stochastic Distance Transform. CoRR Johan Öfverstedt, Joakim Lindblad, Natasa Sladoje
2018	—	`conf`	Towards Automated Multiscale Imaging and Analysis in TEM: Glomerulus Detection by Fusion of CNN and LBP Maps. ECCV Workshops (6) Elisabeth Wetzer, Joakim Lindblad, Ida-Maria Sintorn, Kjell Hultenby, Natasa Sladoje
2017	—	`conf`	Convolutional Neural Networks for False Positive Reduction of Automatically Detected Cilia in Low Magnification TEM Images. SCIA (1) Anindya Gupta, Amit Suveer, Joakim Lindblad, Anca Dragomir, Ida-Maria Sintorn, Natasa Sladoje
2017	—	`conf`	Decoding Gene Expression in 2D and 3D. SCIA (2) Maxime Bombrun, Petter Ranefall, Joakim Lindblad, Amin Allalou, Gabriele Partel, Leslie Solorzano, Xiaoyan Qian, Mats F. Nilsson, Carolina Wählby
2017	C	`conf`	Distance Between Vector-Valued Fuzzy Sets Based on Intersection Decomposition with Applications in Object Detection. ISMM Johan Öfverstedt, Natasa Sladoje, Joakim Lindblad
2017	C	`conf`	Distance Between Vector-Valued Representations of Objects in Images with Application in Object Detection and Classification. IWCIA Natasa Sladoje, Joakim Lindblad
2017	—	`conf`	Enhancement of Cilia Sub-structures by Multiple Instance Registration and Super-Resolution Reconstruction. SCIA (2) Amit Suveer, Natasa Sladoje, Joakim Lindblad, Anca Dragomir, Ida-Maria Sintorn
2016	—	`conf`	Automated detection of cilia in low magnification transmission electron microscopy images using template matching. ISBI Amit Suveer, Natasa Sladoje, Joakim Lindblad, Anca Dragomir, Ida-Maria Sintorn
2016	—	`conf`	Blind restoration of images degraded with mixed poisson-Gaussian noise with application in transmission electron microscopy. ISBI Buda Bajic, Joakim Lindblad, Natasa Sladoje
2016	J	`jnl`	Estimation of Feret's diameter from pixel coverage representation of a shape. Pattern Recognit. Lett. Slobodan Drazic, Natasa Sladoje, Joakim Lindblad
2016	J	`jnl`	Restoration of images degraded by signal-dependent noise based on energy minimization: an empirical study. J. Electronic Imaging Buda Bajic, Joakim Lindblad, Natasa Sladoje
2016	—	`conf`	Signature of a Shape Based on Its Pixel Coverage Representation. DGCI Vladimir Ilic, Joakim Lindblad, Natasa Sladoje
2016	—	`conf`	Single image super-resolution reconstruction in presence of mixed Poisson-Gaussian noise. IPTA Buda Bajic, Joakim Lindblad, Natasa Sladoje
2015	—	`conf`	Coverage segmentation of 3D thin structures. IPTA Kristina Lidayova, Joakim Lindblad, Natasa Sladoje, Hans Frimmel, Chunliang Wang, Örjan Smedby
2015	J	`jnl`	Estimation of linear deformations of 2D and 3D fuzzy objects. Pattern Recognit. Attila Tanács, Joakim Lindblad, Natasa Sladoje, Zoltan Kato
2015	C	`conf`	Exact Linear Time Euclidean Distance Transforms of Grid Line Sampled Shapes. ISMM Joakim Lindblad, Natasa Sladoje
2015	—	`conf`	High-resolution reconstruction by feature distance minimization from multiple views of an object. IPTA Joakim Lindblad, Natasa Sladoje, Amit Suveer, Anca Dragomir, Ida-Maria Sintorn
2015	—	`conf`	Microscopy Image Enhancement for Cost-Effective Cervical Cancer Screening. SCIA Joakim Lindblad, Ewert Bengtsson, Natasa Sladoje
2015	J	`jnl`	Precise Euclidean distance transforms in 3D from voxel coverage representation. Pattern Recognit. Lett. Vladimir Ilic, Joakim Lindblad, Natasa Sladoje
2015	C	`conf`	αLBP - a novel member of the local binary pattern family based on α-cutting. ISPA Marija Delic, Joakim Lindblad, Natasa Sladoje
2014	J	`jnl`	A new set distance and its application to shape registration. Pattern Anal. Appl. Vladimir Curic, Joakim Lindblad, Natasa Sladoje, Hamid Sarve, Gunilla Borgefors
2014	—	`conf`	An Evaluation of Potential Functions for Regularized Image Deblurring. ICIAR (1) Buda Bajic, Joakim Lindblad, Natasa Sladoje
2014	J	`jnl`	Linear Time Distances Between Fuzzy Sets With Applications to Pattern Matching and Classification. IEEE Trans. Image Process. Joakim Lindblad, Natasa Sladoje
2014	B	`conf`	Optimizing Optics and Imaging for Pattern Recognition Based Screening Tasks. ICPR Joakim Lindblad, Natasa Sladoje, Patrik Malm, Ewert Bengtsson, Ramin Moshavegh, Andrew Mehnert
2013	J	`jnl`	Blind Color Decomposition of Histological Images. IEEE Trans. Medical Imaging Milan Gavrilovic, Jimmy C. Azar, Joakim Lindblad, Carolina Wählby, Ewert Bengtsson, Christer Busch, Ingrid B. Carlbom
2013	C	`conf`	Coverage segmentation of thin structures by linear unmixing and local centre of gravity attraction. ISPA Kristina Lidayova, Joakim Lindblad, Natasa Sladoje, Hans Frimmel
2012	J	`jnl`	Coverage segmentation based on linear unmixing and minimization of perimeter and boundary thickness. Pattern Recognit. Lett. Joakim Lindblad, Natasa Sladoje
2011	J	`jnl`	A graph-based framework for sub-pixel image segmentation. Theor. Comput. Sci. Filip Malmberg, Joakim Lindblad, Natasa Sladoje, Ingela Nyström
2011	J	`jnl`	Defuzzification of spatial fuzzy sets by feature distance minimization. Image Vis. Comput. Natasa Sladoje, Joakim Lindblad, Ingela Nyström
2011	C	`conf`	Distance Measures between Digital Fuzzy Objects and Their Applicability in Image Processing. IWCIA Vladimir Curic, Joakim Lindblad, Natasa Sladoje
2011	J	`jnl`	Extracting 3D information on bone remodeling in the proximity of titanium implants in SRμCT image volumes. Comput. Methods Programs Biomed. Hamid Sarve, Joakim Lindblad, Gunilla Borgefors, Carina B. Johansson
2011	C	`conf`	Precise estimation of the projection of a shape from a pixel coverage representation. ISPA Slobodan Drazic, Joakim Lindblad, Natasa Sladoje
2010	B	`conf`	De-noising of SRµCT Fiber Images by Total Variation Minimization. ICPR Joakim Lindblad, Natasa Sladoje, Tibor Lukic
2010	B	`conf`	Estimation of linear deformations of 3D objects. ICIP Attila Tanács, Joakim Lindblad, Natasa Sladoje, Zoltan Kato
2010	—	`conf`	Methods for Visualization of Bone Tissue in the Proximity of Implants. ICCVG (2) Hamid Sarve, Joakim Lindblad, Carina B. Johansson, Gunilla Borgefors
2009	J	`jnl`	High-Precision Boundary Length Estimation by Utilizing Gray-Level Information. IEEE Trans. Pattern Anal. Mach. Intell. Natasa Sladoje, Joakim Lindblad
2009	—	`conf`	Improved Quantification of Bone Remodelling by Utilizing Fuzzy Based Segmentation. SCIA Joakim Lindblad, Natasa Sladoje, Vladimir Curic, Hamid Sarve, Carina B. Johansson, Gunilla Borgefors
2009	Misc	`conf`	Pixel Coverage Segmentation for Improved Feature Estimation. ICIAP Natasa Sladoje, Joakim Lindblad
2009	—	`conf`	Quantification of Bone Remodeling in SRmuCT Images of Implants. SCIA Hamid Sarve, Joakim Lindblad, Carina B. Johansson
2009	—	`conf`	Recovering Affine Deformations of Fuzzy Shapes. SCIA Attila Tanács, Csaba Domokos, Natasa Sladoje, Joakim Lindblad, Zoltan Kato
2009	C	`conf`	Sub-pixel Segmentation with the Image Foresting Transform. IWCIA Filip Malmberg, Joakim Lindblad, Ingela Nyström
2008	—	`conf`	Deterministic Defuzzification Based on Spectral Projected Gradient Optimization. DAGM-Symposium Tibor Lukic, Natasa Sladoje, Joakim Lindblad
2008	—	`conf`	Non-uniform 3D distance transform for anisotropic signal correction in confocal image volumes of skeletal muscle cell nuclei. ISBI Patrick Karlsson Edlund, Joakim Lindblad
2008	—	`conf`	Registration of 2D Histological Images of Bone Implants with 3D SRµCT Volumes. ISVC (1) Hamid Sarve, Joakim Lindblad, Carina B. Johansson
2008	B	`conf`	Spatially-variant morphological operations on binary images based on the polar distance transform. ICPR Kristin Norell, Joakim Lindblad
2007	Misc	`conf`	Grey Weighted Polar Distance Transform for Outlining Circular and Approximately Circular Objects. ICIAP Kristin Norell, Joakim Lindblad, Stina Svensson
2007	C	`conf`	Quantification of Bone Remodeling in the Proximity of Implants. CAIP Hamid Sarve, Carina B. Johansson, Joakim Lindblad, Gunilla Borgefors, Victoria Franke Stenport
2007	J	`jnl`	Representation and reconstruction of fuzzy disks by moments. Fuzzy Sets Syst. Natasa Sladoje, Joakim Lindblad
2006	C	`conf`	Feature Based Defuzzification at Increased Spatial Resolution. IWCIA Joakim Lindblad, Natasa Sladoje
2006	—	`conf`	Feature Based Defuzzification in Z DGCI Joakim Lindblad, Natasa Sladoje, Tibor Lukic
2005	Misc	`conf`	Estimation of Moments of Digitized Objects with Fuzzy Borders. ICIAP Natasa Sladoje, Joakim Lindblad
2005	—	`conf`	Surface Volume Estimation of Digitized Hyperplanes Using Weighted Local Configurations. DGCI Joakim Lindblad
2005	J	`jnl`	Surface area estimation of digitized 3D objects using weighted local configurations. Image Vis. Comput. Joakim Lindblad
2004	—	`conf`	Defuzzification of Discrete Objects by Optimizing Area and Perimeter Similarity. ICPR (3) Natasa Sladoje, Joakim Lindblad, Ingela Nyström
2004	—	`conf`	Segmentation and Separation of Point Like Fluorescent Markers in Digital Images. ISBI Patrick Karlsson, Joakim Lindblad
2003	—	`conf`	Surface Area Estimation of Digitized Planes Using Weighted Local Configurations. DGCI Joakim Lindblad
2002	—	`—`	Development of Algorithms for Digital Image Cytometry. Joakim Lindblad
2002	—	`conf`	Surface Area Estimation of Digitized 3D Objects Using Local Computations. DGCI Joakim Lindblad, Ingela Nyström