Jo Vandesompele

22 papers Journal 22
YearRankTypeTitle / Venue / Authors
2024 J jnl
Benchmarking digital PCR partition classification methods with empirical and simulated duplex data.
Briefings Bioinform.
Yao Chen, Ward De Spiegelaere, Wim Trypsteen, David Gleerup, Jo Vandesompele, Antoon Lievens, Matthijs Vynck, Olivier Thas
2024 J jnl
Digital PCR threshold robustness analysis and optimization using
Briefings Bioinform.
Matthijs Vynck, Wim Trypsteen, Olivier Thas, Jo Vandesompele, Ward De Spiegelaere
2022 J jnl
CIRCprimerXL: Convenient and High-Throughput PCR Primer Design for Circular RNA Quantification.
Frontiers Bioinform.
Marieke Vromman, Jasper Anckaert, Jo Vandesompele, Pieter-Jan Volders
2022 J jnl
CiLiQuant: Quantification of RNA Junction Reads Based on Their Circular or Linear Transcript Origin.
Frontiers Bioinform.
Annelien Morlion, Eva Hulstaert, Marieke Vromman, Jasper Anckaert, Celine Everaert, Jo Vandesompele, Pieter Mestdagh
2021 J jnl
Closing the circle: current state and perspectives of circular RNA databases.
Briefings Bioinform.
Marieke Vromman, Jo Vandesompele, Pieter-Jan Volders
2020 J jnl
SPsimSeq: semi-parametric simulation of bulk and single-cell RNA-sequencing data.
Bioinform.
Alemu Takele Assefa, Jo Vandesompele, Olivier Thas
2019 J jnl
LNCipedia 5: towards a reference set of human long non-coding RNAs.
Nucleic Acids Res.
Pieter-Jan Volders, Jasper Anckaert, Kenneth Verheggen, Justine Nuytens, Lennart Martens, Pieter Mestdagh, Jo Vandesompele
2018 J jnl
Computational deconvolution of transcriptomics data from mixed cell populations.
Bioinform.
Francisco Avila Cobos, Jo Vandesompele, Pieter Mestdagh, Katleen De Preter
2017 J jnl
High-throughput PCR assay design for targeted resequencing using primerXL.
BMC Bioinform.
Steve Lefever, Filip Pattyn, Bram De Wilde, Frauke Coppieters, Sarah De Keulenaer, Jan Hellemans, Jo Vandesompele
2017 J jnl
Zipper plot: visualizing transcriptional activity of genomic regions.
BMC Bioinform.
Francisco Avila Cobos, Jasper Anckaert, Pieter-Jan Volders, Celine Everaert, Dries Rombaut, Jo Vandesompele, Katleen De Preter, Pieter Mestdagh
2017 J jnl
decodeRNA - predicting non-coding RNA functions using guilt-by-association.
Database J. Biol. Databases Curation
Steve Lefever, Jasper Anckaert, Pieter-Jan Volders, Manuel Luypaert, Jo Vandesompele, Pieter Mestdagh
2015 J jnl
An update on LNCipedia: a database for annotated human lncRNA sequences.
Nucleic Acids Res.
Pieter-Jan Volders, Kenneth Verheggen, Gerben Menschaert, Klaas Vandepoele, Lennart Martens, Jo Vandesompele, Pieter Mestdagh
2015 J jnl
RDML-Ninja and RDMLdb for standardized exchange of qPCR data.
BMC Bioinform.
Jan Ruijter, Steve Lefever, Jasper Anckaert, Jan Hellemans, Michael W. Pfaffl, Vladimir Benes, Stephen Bustin, Jo Vandesompele, Andreas Untergasser
2014 J jnl
miRBase Tracker: keeping track of microRNA annotation changes.
Database J. Biol. Databases Curation
Gert Van Peer, Steve Lefever, Jasper Anckaert, Anneleen Beckers, Ali Rihani, Alan Van Goethem, Pieter-Jan Volders, Fjoralba Zeka, Maté Ongenaert, Pieter Mestdagh, Jo Vandesompele
2013 J jnl
LNCipedia: a database for annotated human lncRNA transcript sequences and structures.
Nucleic Acids Res.
Pieter-Jan Volders, Kenny Helsens, Xiaowei Wang, Björn Menten, Lennart Martens, Kris Gevaert, Jo Vandesompele, Pieter Mestdagh
2010 J jnl
Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline.
BMC Bioinform.
Joachim M. De Schrijver, Kim De Leeneer, Steve Lefever, Nick Sabbe, Filip Pattyn, Filip Van Nieuwerburgh, Paul Coucke, Dieter Deforce, Jo Vandesompele, Sofie Bekaert, Jan Hellemans, Wim Van Criekinge
2009 J jnl
RTPrimerDB: the portal for real-time PCR primers and probes.
Nucleic Acids Res.
Steve Lefever, Jo Vandesompele, Frank Speleman, Filip Pattyn
2006 J jnl
RTPrimerDB: the real-time PCR primer and probe database, major update 2006.
Nucleic Acids Res.
Filip Pattyn, Piet Robbrecht, Anne De Paepe, Frank Speleman, Jo Vandesompele
2006 J jnl
methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.
BMC Bioinform.
Filip Pattyn, Jasmien Hoebeeck, Piet Robbrecht, Evi Michels, Anne De Paepe, Guy Bottu, David Coornaert, Robert Herzog, Frank Speleman, Jo Vandesompele
2005 J jnl
arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays.
BMC Bioinform.
Björn Menten, Filip Pattyn, Katleen De Preter, Piet Robbrecht, Evi Michels, Karen Buysse, Geert Mortier, Anne De Paepe, Steven Van Vooren, Joris Robert Vermeesch, Yves Moreau, Bart De Moor, Stefan Vermeulen, Frank Speleman, Jo Vandesompele
2003 J jnl
RTPrimerDB: the Real-Time PCR primer and probe database.
Nucleic Acids Res.
Filip Pattyn, Frank Speleman, Anne De Paepe, Jo Vandesompele
2001 J jnl
Quantification of splice variants using real-time PCR.
Nucleic Acids Res.
Ina I. Vandenbroucke, Jo Vandesompele, Anne De Paepe, Ludwine Messiaen