Jiye Shi

26 papers B 1Journal 23Unranked 2
YearRankTypeTitle / Venue / Authors
2022 J jnl
Mechano-fluorescence actuation in single synaptic vesicles with a DNA framework nanomachine.
Sci. Robotics
Jiangbo Liu, Xinxin Jing, Mengmeng Liu, Fan Li, Min Li, Qian Li, Jiye Shi, Jiang Li, Lihua Wang, Xiuhai Mao, Xiaolei Zuo, Chunhai Fan
2021 J jnl
Co-evolutionary distance predictions contain flexibility information.
Bioinform.
Dominik Schwarz, Guy Georges, Sebastian Kelm, Jiye Shi, Anna Vangone, Charlotte M. Deane
2021 J jnl
Public Baseline and shared response structures support the theory of antibody repertoire functional commonality.
PLoS Comput. Biol.
Matthew I. J. Raybould, Claire Marks, Aleksandr Kovaltsuk, Alan P. Lewis, Jiye Shi, Charlotte M. Deane
2021 J jnl
The Promise of AI for DILI Prediction.
Frontiers Artif. Intell.
Andreu Vall, Yogesh Sabnis, Jiye Shi, Reiner Class, Sepp Hochreiter, Günter Klambauer
2020 J jnl
TCRBuilder: multi-state T-cell receptor structure prediction.
Bioinform.
Wing Ki Wong, Claire Marks, Jinwoo Leem, Alan P. Lewis, Jiye Shi, Charlotte M. Deane
2020 J jnl
Thera-SAbDab: the Therapeutic Structural Antibody Database.
Nucleic Acids Res.
Matthew I. J. Raybould, Claire Marks, Alan P. Lewis, Jiye Shi, Alexander Bujotzek, Bruck Taddese, Charlotte M. Deane
2019 J jnl
D3Pockets: A Method and Web Server for Systematic Analysis of Protein Pocket Dynamics.
J. Chem. Inf. Model.
Zhaoqiang Chen, Xinben Zhang, Cheng Peng, Jinan Wang, Zhijian Xu, Kaixian Chen, Jiye Shi, Weiliang Zhu
2019 J jnl
Underestimated Noncovalent Interactions in Protein Data Bank.
J. Chem. Inf. Model.
Zhijian Xu, Qian Zhang, Jiye Shi, Weiliang Zhu
2018 J jnl
Predicting loop conformational ensembles.
Bioinform.
Claire Marks, Jiye Shi, Charlotte M. Deane
2018 J jnl
Sequential search leads to faster, more efficient fragment-based de novo protein structure prediction.
Bioinform.
Saulo Henrique Pires de Oliveira, Eleanor C. Law, Jiye Shi, Charlotte M. Deane
2017 J jnl
Comparing co-evolution methods and their application to template-free protein structure prediction.
Bioinform.
Saulo Henrique Pires de Oliveira, Jiye Shi, Charlotte M. Deane
2017 J jnl
Sphinx: merging knowledge-based and ab initio approaches to improve protein loop prediction.
Bioinform.
Claire Marks, Jaroslaw Nowak, Stefan Klostermann, Guy Georges, James Dunbar, Jiye Shi, Sebastian Kelm, Charlotte M. Deane
2017 J jnl
Underestimated Halogen Bonds Forming with Protein Backbone in Protein Data Bank.
J. Chem. Inf. Model.
Qian Zhang, Zhijian Xu, Jiye Shi, Weiliang Zhu
2015 — conf
The Cloudlet Accelerator: Bringing Mobile-Cloud Face Recognition into Real-Time.
GLOBECOM Workshops
Nathaniel Powers, Alexander Alling, Kiara Osolinsky, Tolga Soyata, Meng Zhu, Haoliang Wang, He Ba, Wendi B. Heinzelman, Jiye Shi, Minseok Kwon
2014 J jnl
Crowdsourcing Yields a New Standard for Kinks in Protein Helices.
J. Chem. Inf. Model.
Henry R. Wilman, Jean-Paul Ebejer, Jiye Shi, Charlotte M. Deane, Bernhard Knapp
2014 J jnl
Examining Variable Domain Orientations in Antigen Receptors Gives Insight into TCR-Like Antibody Design.
PLoS Comput. Biol.
James Dunbar, Bernhard Knapp, Angelika Fuchs, Jiye Shi, Charlotte M. Deane
2014 J jnl
Improving B-cell epitope prediction and its application to global antibody-antigen docking.
Bioinform.
Konrad Krawczyk, Xiaofeng Liu, Terry Baker, Jiye Shi, Charlotte M. Deane
2014 J jnl
SAbDab: the structural antibody database.
Nucleic Acids Res.
James Dunbar, Konrad Krawczyk, Jinwoo Leem, Terry Baker, Angelika Fuchs, Guy Georges, Jiye Shi, Charlotte M. Deane
2014 — conf
Use of Network Latency Profiling and Redundancy for Cloud Server Selection.
IEEE CLOUD
Minseok Kwon, Zuochao Dou, Wendi B. Heinzelman, Tolga Soyata, He Ba, Jiye Shi
2013 J jnl
Memoir: template-based structure prediction for membrane proteins.
Nucleic Acids Res.
Jean-Paul Ebejer, Jamie R. Hill, Sebastian Kelm, Jiye Shi, Charlotte M. Deane
2013 B conf
Mobile computing - A green computing resource.
WCNC
He Ba, Wendi Rabiner Heinzelman, Charles-Antoine Janssen, Jiye Shi
2011 J jnl
Environment specific substitution tables improve membrane protein alignment.
Bioinform.
Jamie R. Hill, Sebastian Kelm, Jiye Shi, Charlotte M. Deane
2010 J jnl
MEDELLER: homology-based coordinate generation for membrane proteins.
Bioinform.
Sebastian Kelm, Jiye Shi, Charlotte M. Deane
2009 J jnl
iMembrane: homology-based membrane-insertion of proteins.
Bioinform.
Sebastian Kelm, Jiye Shi, Charlotte M. Deane
2003 J jnl
DDBASE2.0: updated domain database with improved identification of structural domains.
Bioinform.
A. Vinayagam, Jiye Shi, Ganesan Pugalenthi, B. Meenakshi, Tom L. Blundell, Ramanathan Sowdhamini
2001 J jnl
HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.
Bioinform.
Paul I. W. de Bakker, Alex Bateman, David F. Burke, Ricardo Núñez Miguel, Kenji Mizuguchi, Jiye Shi, Hiroki Shirai, Tom L. Blundell