Jiri Filipovic

35 papers C 2Misc 1Journal 22Unranked 10
YearRankTypeTitle / Venue / Authors
2026 J jnl
Automatic tuning based on hardware performance counters and machine learning.
Future Gener. Comput. Syst.
Suren Harutyunyan Gevorgyan, Eduardo César, Anna Sikora, Jiri Filipovic, Jordi Alcaraz
2026 J jnl
Towards analysis and refinement of auto-tuning spaces.
Parallel Comput.
Jiri Filipovic, Suren Harutyunyan Gevorgyan, Eduardo César, Anna Sikora
2025 J jnl
Estimating resource budgets to ensure autotuning efficiency.
Parallel Comput.
Jaroslav Olha, Jana Hozzová, Matej Antol, Jiri Filipovic
2024 J jnl
A methodology for comparing optimization algorithms for auto-tuning.
Future Gener. Comput. Syst.
Floris-Jan Willemsen, Richard Schoonhoven, Jiri Filipovic, Jacob O. Tørring, Rob van Nieuwpoort, Ben van Werkhoven
2024 — conf
Efficient Code Region Characterization Through Automatic Performance Counters Reduction Using Machine Learning Techniques.
Euro-Par (1)
Suren Harutyunyan, Eduardo César, Anna Sikora, Jiri Filipovic, Akash Dutta, Ali Jannesari, Jordi Alcaraz
2024 — conf
Towards Dynamic Autotuning of SpMV in CUSP Library.
IPDPS (Workshops)
Miroslav Demek, Jiri Filipovic
2023 J jnl
Kernel Tuning Toolkit.
SoftwareX
Filip Petrovic, Jiri Filipovic
2023 — conf
Towards a Benchmarking Suite for Kernel Tuners.
IPDPS Workshops
Jacob O. Tørring, Ben van Werkhoven, Filip Petrovic, Floris-Jan Willemsen, Jiri Filipovic, Anne C. Elster
2023 J jnl
Towards a Benchmarking Suite for Kernel Tuners.
CoRR
Jacob O. Tørring, Ben van Werkhoven, Filip Petrovic, Floris-Jan Willemsen, Jiri Filipovic, Anne C. Elster
2023 J jnl
Umpalumpa: a framework for efficient execution of complex image processing workloads on heterogeneous nodes.
Computing
David Strelák, David Myska, Filip Petrovic, Jan Polák, Jaroslav Olha, Jiri Filipovic
2023 J jnl
pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support.
Bioinform.
Ondrej Vavra, Jakub Beránek, Jan Stourac, Martin Surkovský, Jiri Filipovic, Jirí Damborský, Jan Martinovic, David Bednar
2022 Misc conf
Improving ligand transport trajectory within flexible receptor in CaverDock.
SAC
Petra Nemcová, Jana Hozzová, Jiri Filipovic
2022 J jnl
Using hardware performance counters to speed up autotuning convergence on GPUs.
J. Parallel Distributed Comput.
Jiri Filipovic, Jana Hozzová, Amin Nezarat, Jaroslav Olha, Filip Petrovic
2021 J jnl
Searching CUDA code autotuning spaces with hardware performance counters: data from benchmarks running on various GPU architectures.
CoRR
Jiri Filipovic, Jana Hozzová, Amin Nezarat, Jaroslav Olha, Filip Petrovic
2021 J jnl
Using hardware performance counters to speed up autotuning convergence on GPUs.
CoRR
Jiri Filipovic, Jana Hozzová, Amin Nezarat, Jaroslav Olha, Filip Petrovic
2020 J jnl
A benchmark set of highly-efficient CUDA and OpenCL kernels and its dynamic autotuning with Kernel Tuning Toolkit.
Future Gener. Comput. Syst.
Filip Petrovic, David Strelák, Jana Hozzová, Jaroslav Olha, Richard Trembecký, Siegfried Benkner, Jiri Filipovic
2020 J jnl
CaverDock: A Novel Method for the Fast Analysis of Ligand Transport.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jiri Filipovic, Ondrej Vávra, Jan Plhak, David Bednar, Sérgio M. Marques, Jan Brezovsky, Ludek Matyska, Jirí Damborský
2020 J jnl
Exploiting historical data: Pruning autotuning spaces and estimating the number of tuning steps.
Concurr. Comput. Pract. Exp.
Jaroslav Olha, Jana Hozzová, Jan Fousek, Jiri Filipovic
2019 J jnl
A Benchmark Set of Highly-efficient CUDA and OpenCL Kernels and its Dynamic Autotuning with Kernel Tuning Toolkit.
CoRR
Filip Petrovic, David Strelák, Jana Hozzová, Jaroslav Olha, Richard Trembecký, Siegfried Benkner, Jiri Filipovic
2019 J jnl
A GPU acceleration of 3-D Fourier reconstruction in cryo-EM.
Int. J. High Perform. Comput. Appl.
David Strelák, Carlos Oscar Sánchez Sorzano, José María Carazo, Jiri Filipovic
2019 J jnl
Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport.
Nucleic Acids Res.
Jan Stourac, Ondrej Vavra, Piia Kokkonen, Jiri Filipovic, Gaspar R. P. Pinto, Jan Brezovsky, Jirí Damborský, David Bednar
2019 J jnl
CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels.
Bioinform.
Ondrej Vavra, Jiri Filipovic, Jan Plhak, David Bednar, Sérgio M. Marques, Jan Brezovsky, Jan Stourac, Ludek Matyska, Jirí Damborský
2019 — conf
Exploiting Historical Data: Pruning Autotuning Spaces and Estimating the Number of Tuning Steps.
Euro-Par Workshops
Jaroslav Olha, Jana Hozzová, Jan Fousek, Jiri Filipovic
2018 — conf
Performance analysis and autotuning setup of the cuFFT library.
ANDARE@PACT
David Strelák, Jiri Filipovic
2017 — conf
Autotuning of OpenCL Kernels with Global Optimizations.
ANDARE@PACT
Jiri Filipovic, Filip Petrovic, Siegfried Benkner
2015 — conf
Acceleration of dRMSD calculation and efficient usage of GPU caches.
HPCS
Jiri Filipovic, Jan Plhak, David Strelák
2015 C conf
OpenCL Kernel Fusion for GPU, Xeon Phi and CPU.
SBAC-PAD
Jiri Filipovic, Siegfried Benkner
2015 J jnl
Optimizing CUDA code by kernel fusion: application on BLAS.
J. Supercomput.
Jiri Filipovic, Matus Madzin, Jan Fousek, Ludek Matyska
2013 J jnl
Optimizing CUDA Code By Kernel Fusion---Application on BLAS
CoRR
Jiri Filipovic, Matus Madzin, Jan Fousek, Ludek Matyska
2011 J jnl
Automatic fusions of CUDA-GPU kernels for parallel map.
SIGARCH Comput. Archit. News
Jan Fousek, Jiri Filipovic, Matus Madzin
2011 J jnl
Distributed Construction of Configuration Spaces for Real-Time Haptic Deformation Modeling.
IEEE Trans. Ind. Electron.
Igor Peterlík, Jiri Filipovic
2010 — conf
Haptic Rendering Based on RBF Approximation from Dynamically Updated Data.
MEMICS
Jan Fousek, Tomas Golembiovsky, Jiri Filipovic, Igor Peterlík
2009 — conf
On-line precomputation algorithm for real-time haptic interaction with non-linear deformable bodies.
WHC
Jiri Filipovic, Igor Peterlík, Ludek Matyska
2008 — conf
Job Provenance - Insight into Very Large Provenance Datasets.
IPAW
Ales Krenek, Ludek Matyska, Jirí Sitera, Miroslav Ruda, Frantisek Dvorák, Jiri Filipovic, Zdenek Sustr, Zdenek Salvet
2008 C conf
Multiple Ligand Trajectory Docking Study - Semiautomatic Analysis of Molecular Dynamics Simulations using EGEE gLite Services.
PDP
Ales Krenek, Martin Petrek, Jan Kmunícek, Jiri Filipovic, Zdenek Sustr, Frantisek Dvorák, Jirí Sitera, Jiri Wiesner, Ludek Matyska