Jinghua Gu

17 papers C 3Misc 1Journal 9Unranked 3
YearRankTypeTitle / Venue / Authors
2024 J jnl
Ragas: integration and enhanced visualization for single cell subcluster analysis.
Bioinform.
Uthra Balaji, Juan Rodríguez-Alcázar, Preetha Balasubramanian, Cynthia Smitherman, Jeanine Baisch, Virginia Pascual, Jinghua Gu
2019 J jnl
Breaking the paradigm: Dr Insight empowers signature-free, enhanced drug repurposing.
Bioinform.
Jinyan Chan, Xuan Wang, Jacob A. Turner, Nicole E. Baldwin, Jinghua Gu
2018 J jnl
CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data.
Bioinform.
Xi Chen, Jinghua Gu, Xiao Wang, Jin-Gyoung Jung, Tian-Li Wang, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
2017 J jnl
DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency.
Bioinform.
Xiao Wang, Jinghua Gu, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
2017 J jnl
Phantom: investigating heterogeneous gene sets in time-course data.
Bioinform.
Jinghua Gu, Xuan Wang, Jinyan Chan, Nicole E. Baldwin, Jacob A. Turner
2014 C conf
A Markov random field-based Bayesian model to identify genes with differential methylation.
CIBCB
Xiao Wang, Jinghua Gu, Jianhua Xuan, Robert Clarke, Leena Hilakivi-Clarke
2014 J jnl
BADGE: A novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data.
BMC Bioinform.
Jinghua Gu, Xiao Wang, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
2014 J jnl
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.
Bioinform.
Jinghua Gu, Jianhua Xuan, Rebecca B. Riggins, Li Chen, Yue Joseph Wang, Robert Clarke
2013 — —
Novel Monte Carlo Approaches to Identify Aberrant Pathways in Cancer.
Jinghua Gu
2013 — conf
Reconstructing transcriptional regulatory networks by probabilistic network component analysis.
BCB
Jinghua Gu, Jianhua Xuan, Xiao Wang, Ayesha N. Shajahan, Leena Hilakivi-Clarke, Robert Clarke
2013 J jnl
mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks.
BMC Syst. Biol.
Xu Shi, Jinghua Gu, Xi Chen, Ayesha N. Shajahan, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
2012 C conf
Detecting aberrant signal transduction pathways from high-throughput data using GIST algorithm.
CIBCB
Jinghua Gu, Jianhua Xuan, Chen Wang, Li Chen, Tian-Li Wang, Ie-Ming Shih
2012 Misc conf
Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian Cancer.
Pacific Symposium on Biocomputing
Li Chen, Jianhua Xuan, Jinghua Gu, Yue Wang, Zhen Zhang, Tian-Li Wang, Ie-Ming Shih
2012 J jnl
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.
Bioinform.
Jinghua Gu, Jianhua Xuan, Rebecca B. Riggins, Li Chen, Yue Joseph Wang, Robert Clarke
2012 — conf
Sampling-Based Subnetwork Identification from Microarray Data and Protein-Protein Interaction Network.
ICMLA (2)
Xiao Wang, Jinghua Gu, Jianhua Xuan, Ayesha N. Shajahan, Robert Clarke, Li Chen
2011 — conf
GIST: A Gibbs sampler to identify intracellular signal transduction pathways.
EMBC
Jinghua Gu, Chen Wang, Ie-Ming Shih, Tian-Li Wang, Yue Wang, Robert Clarke, Jianhua Xuan
2010 C conf
Identification of Transcriptional Regulatory Networks by Learning the Marginal Function of Outlier Sum Statistic.
ICMLA
Jinghua Gu, Jianhua Xuan, Yue Joseph Wang, Rebecca B. Riggins, Robert Clarke