Jingcheng Du - RankMe

68 papers Misc 12Journal 39Unranked 17

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	AutoCriteria: a generalizable clinical trial eligibility criteria extraction system powered by large language models. J. Am. Medical Informatics Assoc. Surabhi Datta, Kyeryoung Lee, Hunki Paek, Frank J. Manion, Nneka Ofoegbu, Jingcheng Du, Ying Li, Liang-Chin Huang, Jingqi Wang, Bin Lin, Hua Xu, Xiaoyan Wang
2024	J	`jnl`	Improving large language models for clinical named entity recognition via prompt engineering. J. Am. Medical Informatics Assoc. Yan Hu, Qingyu Chen, Jingcheng Du, Xueqing Peng, Vipina Kuttichi Keloth, Xu Zuo, Yujia Zhou, Zehan Li, Xiaoqian Jiang, Zhiyong Lu, Kirk Roberts, Hua Xu
2023	J	`jnl`	Large language models in biomedical natural language processing: benchmarks, baselines, and recommendations. CoRR Qingyu Chen, Jingcheng Du, Yan Hu, Vipina Kuttichi Keloth, Xueqing Peng, Kalpana Raja, Rui Zhang, Zhiyong Lu, Hua Xu
2023	J	`jnl`	Machine learning-based donor permission extraction from informed consent documents. BMC Bioinform. Meng Zhang, Madhuri Sankaranarayanapillai, Jingcheng Du, Yang Xiang, Frank J. Manion, Marcelline R. Harris, Cooper Stansbury, Huy Anh Pham, Cui Tao
2023	J	`jnl`	SHAPE: A Sample-Adaptive Hierarchical Prediction Network for Medication Recommendation. IEEE J. Biomed. Health Informatics Sicen Liu, Xiaolong Wang, Jingcheng Du, Yongshuai Hou, Xianbing Zhao, Hui Xu, Hui Wang, Yang Xiang, Buzhou Tang
2023	J	`jnl`	SHAPE: A Sample-adaptive Hierarchical Prediction Network for Medication Recommendation. CoRR Sicen Liu, Xiaolong Wang, Jingcheng Du, Yongshuai Hou, Xianbing Zhao, Hui Xu, Hui Wang, Yang Xiang, Buzhou Tang
2023	J	`jnl`	Systematic design and data-driven evaluation of social determinants of health ontology (SDoHO). J. Am. Medical Informatics Assoc. Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Muhammad F. Amith, J. Wilfred Fan, Jingcheng Du, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao
2022	Misc	`conf`	Combining Transfer Learning with Graph Attention Models for HIV Risk Prediction. AMIA Evan Yu, Cui Tao, Jingcheng Du, Degui Zhi, Yang Xiang, Kayo Fujimoto, Xi Luo, John A. Schneider
2022	—	`conf`	IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements. ICHI Shiqiang Tao, Wei-Chun Chou, Jianfu Li, Jingcheng Du, Pritham Ram, Rashmie Abeysinghe, Hua Xu, Xiaoqian Jiang, Peter W. Rose, Lucila Ohno-Machado, Guo-Qiang Zhang
2022	—	`conf`	LANN: an Integrated Online Annotation Tool for Information Extraction. ICHI Jingqi Wang, Yaoyun Zhang, Bin Lin, Huy Anh Pham, Long He, Jingcheng Du, Frank J. Manion
2022	J	`jnl`	LitMC-BERT: Transformer-Based Multi-Label Classification of Biomedical Literature With An Application on COVID-19 Literature Curation. IEEE ACM Trans. Comput. Biol. Bioinform. Qingyu Chen, Jingcheng Du, Alexis Allot, Zhiyong Lu
2022	J	`jnl`	LitMC-BERT: transformer-based multi-label classification of biomedical literature with an application on COVID-19 literature curation. CoRR Qingyu Chen, Jingcheng Du, Alexis Allot, Zhiyong Lu
2022	J	`jnl`	Mining On Alzheimer's Diseases Related Knowledge Graph to Identity Potential AD-related Semantic Triples for Drug Repurposing. CoRR Yi Nian, Xinyue Hu, Rui Zhang, Jingna Feng, Jingcheng Du, Fang Li, Yong Chen, Cui Tao
2022	J	`jnl`	Mining on Alzheimer's diseases related knowledge graph to identity potential AD-related semantic triples for drug repurposing. BMC Bioinform. Yi Nian, Xinyue Hu, Rui Zhang, Jingna Feng, Jingcheng Du, Fang Li, Larry Bu, Yuji Zhang, Yong Chen, Cui Tao
2022	J	`jnl`	Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations. Database J. Biol. Databases Curation Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Senja Pollak, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Saipradeep Vg, Zhiyong Lu
2022	J	`jnl`	Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations. CoRR Qingyu Chen, Alexis Allot, Robert Leaman, Rezarta Islamaj Dogan, Jingcheng Du, Li Fang, Wang Kai, Shuo Xu, Yuefu Zhang, Parsa Bagherzadeh, Sabine Bergler, Aakash Bhatnagar, Nidhir Bhavsar, Yung-Chun Chang, Sheng-Jie Lin, Wentai Tang, Hongtong Zhang, Ilija Tavchioski, Shubo Tian, Jinfeng Zhang, Yulia Otmakhova, Antonio Jimeno-Yepes, Hang Dong, Honghan Wu, Richard Dufour, Yanis Labrak, Niladri Chatterjee, Kushagri Tandon, Fréjus A. A. Laleye, Loïc Rakotoson, Emmanuele Chersoni, Jinghang Gu, Annemarie Friedrich, Subhash Chandra Pujari, Mariia Chizhikova, Naveen Sivadasan, Zhiyong Lu
2022	J	`jnl`	Systematic Design and Evaluation of Social Determinants of Health Ontology (SDoHO). CoRR Yifang Dang, Fang Li, Xinyue Hu, Vipina Kuttichi Keloth, Meng Zhang, Sunyang Fu, Jingcheng Du, J. Wilfred Fan, Muhammad F. Amith, Evan Yu, Hongfang Liu, Xiaoqian Jiang, Hua Xu, Cui Tao
2021	Misc	`conf`	AM2BERT: attention guided and regularized transformer-based multi-label classification model for COVID-19 literature curation. AMIA Qingyu Chen, Jingcheng Du, Alexis Allot, Zhiyong Lu
2021	J	`jnl`	COVID-19 trial graph: a linked graph for COVID-19 clinical trials. J. Am. Medical Informatics Assoc. Jingcheng Du, Qing Wang, Jingqi Wang, Prerana Ramesh, Yang Xiang, Xiaoqian Jiang, Cui Tao
2021	Misc	`conf`	Data and Model Biases in Social Media Analyses: A Case Study of COVID-19 Tweets. AMIA Yunpeng Zhao, Pengfei Yin, Yongqiu Li, Xing He, Jingcheng Du, Cui Tao, Yi Guo, Mattia Prosperi, Pierangelo Veltri, Xi Yang, Yonghui Wu, Jiang Bian
2021	J	`jnl`	Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review. J. Biomed. Informatics Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
2021	J	`jnl`	Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning. J. Am. Medical Informatics Assoc. Jingcheng Du, Yang Xiang, Madhuri Sankaranarayanapillai, Meng Zhang, Jingqi Wang, Yuqi Si, Huy Anh Pham, Hua Xu, Yong Chen, Cui Tao
2021	J	`jnl`	Knowledge Graph-based Neurodegenerative Diseases and Diet Relationship Discovery. CoRR Yi Nian, Jingcheng Du, Larry Bu, Fang Li, Xinyue Hu, Yuji Zhang, Cui Tao
2021	—	`conf`	Understanding Public Perceptions of Measles from Twitter Using Multi-Task Convolutional Neural Networks. MedInfo Samuel Wang, Jingcheng Du, Lu Tang, Cui Tao
2020	J	`jnl`	A study of deep learning approaches for medication and adverse drug event extraction from clinical text. J. Am. Medical Informatics Assoc. Qiang Wei, Zongcheng Ji, Zhiheng Li, Jingcheng Du, Jingqi Wang, Jun Xu, Yang Xiang, Firat Tiryaki, Stephen Wu, Yaoyun Zhang, Cui Tao, Hua Xu
2020	J	`jnl`	Deep Representation Learning of Patient Data from Electronic Health Records (EHR): A Systematic Review. CoRR Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
2020	Misc	`conf`	Deep Representation Learning of Patient Data from Electronic Health Records: A Systematic Review. AMIA Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts
2020	J	`jnl`	Deep learning in clinical natural language processing: a methodical review. J. Am. Medical Informatics Assoc. Stephen Wu, Kirk Roberts, Surabhi Datta, Jingcheng Du, Zongcheng Ji, Yuqi Si, Sarvesh Soni, Qiong Wang, Qiang Wei, Yang Xiang, Bo Zhao, Hua Xu
2020	J	`jnl`	Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records. BMC Medical Informatics Decis. Mak. Qingyu Chen, Jingcheng Du, Sun Kim, W. John Wilbur, Zhiyong Lu
2020	J	`jnl`	Exploring temporal suicidal behavior patterns on social media: Insight from Twitter analytics. Health Informatics J. Jianhong Luo, Jingcheng Du, Cui Tao, Hua Xu, Yaoyun Zhang
2020	J	`jnl`	On the evidence consistency of pharmacovigilance outcomes between Food and Drug Administration Adverse Event Reporting System and electronic medical record data for acute mania patients. Health Informatics J. Rui Duan, Xinyuan Zhang, Jingcheng Du, Jing Huang, Cui Tao, Yong Chen
2020	J	`jnl`	Ontological representation-oriented term normalization and standardization of the Research Domain Criteria. Health Informatics J. Fang Li, Guozheng Rao, Jingcheng Du, Yang Xiang, Yaoyun Zhang, Salih Selek, Jane Elizabeth Hamilton, Hua Xu, Cui Tao
2020	J	`jnl`	Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events. J. Am. Medical Informatics Assoc. Fang Li, Jingcheng Du, Yongqun He, Hsing-yi Song, Mohcine Madkour, Guozheng Rao, Yang Xiang, Yi Luo, Henry W. Chen, Sijia Liu, Liwei Wang, Hongfang Liu, Hua Xu, Cui Tao
2019	J	`jnl`	Comparing drug safety of hepatitis C therapies using post-market data. BMC Medical Informatics Decis. Mak. Jing Huang, Xinyuan Zhang, Jiayi Tong, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Cui Tao, Yong Chen
2019	J	`jnl`	Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records. CoRR Qingyu Chen, Jingcheng Du, Sun Kim, W. John Wilbur, Zhiyong Lu
2019	—	`conf`	Evaluation of Five Sentence Similarity Models on Electronic Medical Records. BCB Qingyu Chen, Jingcheng Du, Sun Kim, W. John Wilbur, Zhiyong Lu
2019	J	`jnl`	Exploring difference in public perceptions on HPV vaccine between gender groups from Twitter using deep learning. CoRR Jingcheng Du, Chongliang Luo, Qiang Wei, Yong Chen, Cui Tao
2019	J	`jnl`	Leveraging deep learning to understand health beliefs about the Human Papillomavirus Vaccine from social media. npj Digit. Medicine Jingcheng Du, Rachel Cunningham, Yang Xiang, Fang Li, Yuxi Jia, Julie A. Boom, Sahiti Myneni, Jiang Bian, Chongliang Luo, Yong Chen, Cui Tao
2019	J	`jnl`	ML-Net: multi-label classification of biomedical texts with deep neural networks. J. Am. Medical Informatics Assoc. Jingcheng Du, Qingyu Chen, Yifan Peng, Yang Xiang, Cui Tao, Zhiyong Lu
2019	Misc	`conf`	Relation Extraction from Clinical Narratives Using Pre-trained Language Models. AMIA Qiang Wei, Zongcheng Ji, Yuqi Si, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Stephen Wu, Cui Tao, Kirk Roberts, Hua Xu
2019	—	`conf`	Systematic Design of Drug Repurposing-Oriented Alzheimer's Disease Ontology. ICHI Fang Li, Mingqiang Wang, Huy Anh Pham, Yang Xiang, Muhammad Tuan Amith, Cui Tao, Jingcheng Du, Guozheng Rao
2019	Misc	`conf`	Text Mining and Machine Learning for Precision Medicine. PSB Graciela Gonzalez, Zhiyong Lu, Robert Leaman, Davy Weissenbacher, Mary Regina Boland, Yong Chen, Jingcheng Du, Juliane Fluck, Casey S. Greene, John H. Holmes, Aditya Kashyap, Rikke Linnemann Nielsen, Zhengqing Ouyang, Sebastian Schaaf, Jaclyn N. Taroni, Cui Tao, Yuping Zhang, Hongfang Liu
2018	Misc	`conf`	Asthma Onset Prediction Using Structured EMR Data. AMIA Yang Xiang, Jun Xu, Jingcheng Du, Degui Zhi, Cui Tao
2018	—	`conf`	Comparing Pharmacovigilance Outcomes Between FAERS and EMR Data for Acute Mania Patients. ICHI Workshops Xinyuan Zhang, Rui Duan, Jingcheng Du, Jing Huang, Yong Chen, Cui Tao
2018	—	`conf`	Comparing adverse effects of Hepatitis C drugs using FAERS data. BIBM Jing Huang, Xinyuan Zhang, Jiayi Tong, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Yong Chen, Cui Tao
2018	Misc	`conf`	Construction of Drug Repurposing-oriented Alzheimer's Disease Ontology. AMIA Fang Li, Jingcheng Du, Guozheng Rao, Cui Tao
2018	Misc	`conf`	Detecting Anatomical Entities in Clinical Text. AMIA Jun Xu, Yaoyun Zhang, Jingcheng Du, Jingqi Wang, Firat Tiryaki, Hua Xu
2018	—	`conf`	Exploring Temporal Patterns of Suicidal Behavior on Twitter. ICHI Workshops Jianhong Luo, Jingcheng Du, Cui Tao, Hua Xu, Yaoyun Zhang
2018	J	`jnl`	Extracting psychiatric stressors for suicide from social media using deep learning. BMC Medical Informatics Decis. Mak. Jingcheng Du, Yaoyun Zhang, Jianhong Luo, Yuxi Jia, Qiang Wei, Cui Tao, Hua Xu
2018	Misc	`conf`	Identification of Rare Adverse Events with Year-varying Reporting Rates for FLU4 Vaccine in VAERS. AMIA Jiayi Tong, Jing Huang, Jingcheng Du, Yi Cai, Cui Tao, Yong Chen
2018	J	`jnl`	ML-Net: multi-label classification of biomedical texts with deep neural networks. CoRR Jingcheng Du, Qingyu Chen, Yifan Peng, Yang Xiang, Cui Tao, Zhiyong Lu
2018	Misc	`conf`	Mining Human Papillomavirus Vaccination Health Beliefs from Twitter Using Attentive Recurrent Neural Network. AMIA Jingcheng Du, Fang Li, Yuxi Jia, Yang Xiang, Lu Tang, Sahiti Myneni, Cui Tao
2018	—	`conf`	Term Standardization and Normalization for Research Domain Criteria (RDoC). ICHI Workshops Fang Li, Guozheng Rao, Jingcheng Du, Yang Xiang, Yaoyun Zhang, Salih Selek, Jane Elizabeth Hamilton, Hua Xu, Cui Tao
2017	Misc	`conf`	A Twitter Study of the Relationship between the Geographic Variations of HPV Vaccination Rates and Online Information in the United States. AMIA Hansi Zhang, Yunpeng Zhao, Christopher Wheldon, Xinsong Du, Terrell Brown, Yi Guo, Stephanie Staras, Jingcheng Du, Cui Tao, Jiang Bian
2017	—	`conf`	A pilot study of mining association between psychiatric stressors and symptoms in tweets. BIBM Jingcheng Du, Yaoyun Zhang, Cui Tao, Hua Xu
2017	J	`jnl`	A signal detection method for temporal variation of adverse effect with vaccine adverse event reporting system data. BMC Medical Informatics Decis. Mak. Yi Cai, Jingcheng Du, Jing Huang, Susan S. Ellenberg, Sean Hennessy, Cui Tao, Yong Chen
2017	—	`conf`	Comparing Different Adverse Effects Among Multiple Drugs Using FAERS Data. MedInfo Jing Huang, Xinyuan Zhang, Jingcheng Du, Rui Duan, Liu Yang, Jason H. Moore, Yong Chen, Cui Tao
2017	—	`conf`	Comparing the Human Papillomavirus Vaccination Opinions Trends from Different Twitter User Groups with a Machine Learning Based System and Semiparametric Nonlinear Regression. MedInfo Jingcheng Du, Jing Huang, Rui Duan, Yong Chen, Cui Tao
2017	—	`conf`	Leveraging Machine Learning Based Approaches to Assess Human Papillomavirus Vaccination Sentiment Trends with Twitter. CRI Jingcheng Du, Jun Xu, Hsing-yi Song, Cui Tao
2017	J	`jnl`	Leveraging machine learning-based approaches to assess human papillomavirus vaccination sentiment trends with Twitter data. BMC Medical Informatics Decis. Mak. Jingcheng Du, Jun Xu, Hsing-yi Song, Cui Tao
2017	J	`jnl`	Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets. J. Biomed. Semant. Jingcheng Du, Jun Xu, Hsing-yi Song, Xiangyu Liu, Cui Tao
2017	—	`conf`	Post-marketing Drug Safety Evaluation Using Data Mining Based on FAERS. DMBD Rui Duan, Xinyuan Zhang, Jingcheng Du, Jing Huang, Cui Tao, Yong Chen
2016	—	`conf`	A representational analysis of a temporal indeterminancy display in clinical events. BIBM Mohcine Madkour, Hsing-yi Song, Jingcheng Du, Cui Tao
2016	J	`jnl`	Erratum to: Extracting drug-enzyme relation from literature as evidence for drug drug interaction. J. Biomed. Semant. Yaoyun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu, Jingqi Wang, Cui Tao, Lang Li, Hua Xu
2016	J	`jnl`	Extracting drug-enzyme relation from literature as evidence for drug drug interaction. J. Biomed. Semant. Yaoyun Zhang, Heng-Yi Wu, Jingcheng Du, Jun Xu, Jingqi Wang, Cui Tao, Lang Li, Hua Xu
2016	J	`jnl`	Trivalent influenza vaccine adverse symptoms analysis based on MedDRA terminology using VAERS data in 2011. J. Biomed. Semant. Jingcheng Du, Yi Cai, Yong Chen, Cui Tao
2015	—	`conf`	Trivalent Influenza Vaccine Adverse Event Analysis Based On MedDRA System Organ Classes Using VAERS Data. MedInfo Cui Tao, Jingcheng Du, Yi Cai, Yong Chen
2014	—	`conf`	GSO: A Semantic Web Ontology to Capture 3D Genome Structure. SWAT4LS W. Jim Zheng, Jingcheng Du, Jijun Tang, Cui Tao