Jing Tang

45 papers Journal 42Unranked 1
YearRankTypeTitle / Venue / Authors
2026 — ed.
Bioinformatics Research and Applications - 21st International Symposium, ISBRA 2025, Helsinki, Finland, August 3-5, 2025, Proceedings, Part I
ISBRA (1)
Jing Tang, Xin Lai, Zhipeng Cai, Wei Peng, Yanjie Wei
2026 — ed.
Bioinformatics Research and Applications - 21st International Symposium, ISBRA 2025, Helsinki, Finland, August 3-5, 2025, Proceedings, Part II
ISBRA (2)
Jing Tang, Xin Lai, Zhipeng Cai, Wei Peng, Yanjie Wei
2025 J jnl
ActivityDiff: A diffusion model with Positive and Negative Activity Guidance for De Novo Drug Design.
CoRR
Renyi Zhou, Huimin Zhu, Jing Tang, Min Li
2025 — conf
CADS: Causal Inference for Dissecting Essential Genes to Predict Drug Synergy.
ISBRA (1)
Huaiwu Zhang, Jing Tang
2025 J jnl
TransScore: A Graph Model for Pose Scoring and Affinity Prediction Based on Transformer Convolution Network.
IEEE J. Biomed. Health Informatics
Chuqi Lei, Wenkang Wang, Wei Fan, Zhangli Lu, Jing Tang, Min Li
2024 J jnl
Drug repositioning with adaptive graph convolutional networks.
Bioinform.
Xinliang Sun, Xiao Jia, Zhangli Lu, Jing Tang, Min Li
2024 J jnl
Herb-CMap: a multimodal fusion framework for deciphering the mechanisms of action in traditional Chinese medicine using Suhuang antitussive capsule as a case study.
Briefings Bioinform.
Yinyin Wang, Yihang Sui, Jiaqi Yao, Hong Jiang, Qimeng Tian, Yun Tang, Yongyu Ou, Jing Tang, Ninghua Tan
2024 J jnl
SAFER: sub-hypergraph attention-based neural network for predicting effective responses to dose combinations.
BMC Bioinform.
Yi-Ching Tang, Rongbin Li, Jing Tang, W. Jim Zheng, Xiaoqian Jiang
2023 J jnl
DTIAM: A unified framework for predicting drug-target interactions, binding affinities and activation/inhibition mechanisms.
CoRR
Zhangli Lu, Chuqi Lei, Kaili Wang, Libo Qin, Jing Tang, Min Li
2023 J jnl
GraphscoreDTA: optimized graph neural network for protein-ligand binding affinity prediction.
Bioinform.
Kaili Wang, Renyi Zhou, Jing Tang, Min Li
2023 J jnl
Navigating the development challenges in creating complex data systems.
Nat. Mac. Intell.
Sören Dittmer, Michael Roberts, Julian D. Gilbey, Ander Biguri, Ian Selby, Anna Breger, Matthew Thorpe, Jonathan R. Weir-McCall, Effrossyni Gkrania-Klotsas, Anna Korhonen, Emily R. Jefferson, Georg Langs, Guang Yang, Helmut Prosch, Jan Stanczuk, Jing Tang, Judith Babar, Lorena Escudero Sanchez, Philip Teare, Mishal Patel, Marcel Wassin, Markus Holzer, Nicholas Walton, Pietro Lió, Tolou Shadbahr, Evis Sala, Jacobus Preller, James H. F. Rudd, John A. D. Aston, Carola-Bibiane Schönlieb
2023 J jnl
Proposal for a framework of contextual metadata in selected research infrastructures of the life sciences and the social sciences & humanities.
Int. J. Metadata Semant. Ontologies
Christian Ohmann, Maria Panagiotopoulou, Steve Canham, Petr Holub, Kurt Majcen, Gary Saunders, Maddalena Fratelli, Jing Tang, Philip Gribbon, Reagon Karki, Mari Kleemola, Katja Moilanen, Daan Broeder, Walter Daelemans, Pieter Fivez
2023 J jnl
The Impact of Computational Drug Discovery on Society.
IEEE Trans. Comput. Soc. Syst.
Jianxin Wang, Min Li, Edwin Wang, Jing Tang, Bin Hu
2023 J jnl
drda: An
J. Stat. Softw.
Alina Malyutina, Jing Tang, Alberto Pessia
2022 J jnl
Classification of datasets with imputed missing values: does imputation quality matter?
CoRR
Tolou Shadbahr, Michael Roberts, Jan Stanczuk, Julian D. Gilbey, Philip Teare, Sören Dittmer, Matthew Thorpe, Ramón Viñas Torné, Evis Sala, Pietro Lió, Mishal Patel, AIX-COVNET Collaboration, James H. F. Rudd, Tuomas Mirtti, Antti Rannikko, John A. D. Aston, Jing Tang, Carola-Bibiane Schönlieb
2022 J jnl
Minimal information for chemosensitivity assays (MICHA): a next-generation pipeline to enable the FAIRification of drug screening experiments.
Briefings Bioinform.
ZiaurRehman Tanoli, Jehad Aldahdooh, Farhan Alam, Yinyin Wang, Umair Seemab, Maddalena Fratelli, Petr Pavlis, Marián Hajdúch, Florence Bietrix, Philip Gribbon, Andrea Zaliani, Matthew D. Hall, Min Shen, Kyle R. Brimacombe, Evgeny Kulesskiy, Saarela Jani, Krister Wennerberg, Markus Vähä-Koskela, Jing Tang
2022 J jnl
PGMG: A Pharmacophore-Guided Deep Learning Approach for Bioactive Molecular Generation.
CoRR
Huimin Zhu, Renyi Zhou, Jing Tang, Min Li
2022 J jnl
SynergyFinder Plus: Toward Better Interpretation and Annotation of Drug Combination Screening Datasets.
Genom. Proteom. Bioinform.
Shuyu Zheng, Wenyu Wang, Jehad Aldahdooh, Alina Malyutina, Tolou Shadbahr, ZiaurRehman Tanoli, Alberto Pessia, Jing Tang
2022 J jnl
The ENDS of assumptions: an online tool for the epistemic non-parametric drug-response scoring.
Bioinform.
Ali Amiryousefi, Bernardo Williams, Mohieddin Jafari, Jing Tang
2022 J jnl
Using BERT to identify drug-target interactions from whole PubMed.
BMC Bioinform.
Jehad Aldahdooh, Markus Vähä-Koskela, Jing Tang, ZiaurRehman Tanoli
2021 J jnl
Anticancer drug synergy prediction in understudied tissues using transfer learning.
J. Am. Medical Informatics Assoc.
Yejin Kim, Shuyu Zheng, Jing Tang, W. Jim Zheng, Zhao Li, Xiaoqian Jiang
2021 J jnl
Bayes in Wonderland! Predictive supervised classification inference hits unpredictability.
CoRR
Ali Amiryousefi, Ville Kinnula, Jing Tang
2021 J jnl
Bayesian supervised predictive classification and hypothesis testing toolkit for partition exchangeability.
CoRR
Ville Kinnula, Jing Tang, Ali Amiryousefi
2021 J jnl
Comparative analysis of molecular fingerprints in prediction of drug combination effects.
Briefings Bioinform.
Bulat Zagidullin, Ziyan Wang, Yuanfang Guan, Esa Pitkänen, Jing Tang
2021 J jnl
DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal.
Nucleic Acids Res.
Shuyu Zheng, Jehad Aldahdooh, Tolou Shadbahr, Yinyin Wang, Dalal Aldahdooh, Jie Bao, Wenyu Wang, Jing Tang
2021 J jnl
Exploration of databases and methods supporting drug repurposing: a comprehensive survey.
Briefings Bioinform.
ZiaurRehman Tanoli, Umair Seemab, Andreas Scherer, Krister Wennerberg, Jing Tang, Markus Vähä-Koskela
2021 J jnl
Network-based modeling of herb combinations in traditional Chinese medicine.
Briefings Bioinform.
Yinyin Wang, Hongbin Yang, Linxiao Chen, Mohieddin Jafari, Jing Tang
2021 J jnl
Network-guided identification of cancer-selective combinatorial therapies in ovarian cancer.
Briefings Bioinform.
Liye He, Daria Bulanova, Jaana Oikkonen, Antti Häkkinen, Kaiyang Zhang, Shuyu Zheng, Wenyu Wang, Erdogan Pekcan Erkan, Olli Carpén, Titta Joutsiniemi, Sakari Hietanen, Johanna Hynninen, Kaisa Huhtinen, Sampsa Hautaniemi, Anna Vähärautio, Jing Tang, Krister Wennerberg, Tero Aittokallio
2021 J jnl
R-BERT-CNN: Drug-target interactions extraction from biomedical literature.
CoRR
Jehad Aldahdooh, ZiaurRehman Tanoli, Jing Tang
2020 J jnl
Drug Repurposing for COVID-19 using Graph Neural Network with Genetic, Mechanistic, and Epidemiological Validation.
CoRR
Kanglin Hsieh, Yinyin Wang, Luyao Chen, Zhongming Zhao, Sean I. Savitz, Xiaoqian Jiang, Jing Tang, Yejin Kim
2020 J jnl
SynergyFinder: a web application for analyzing drug combination dose-response matrix data.
Bioinform.
Aleksandr Ianevski, Liye He, Tero Aittokallio, Jing Tang
2019 J jnl
Drug combination sensitivity scoring facilitates the discovery of synergistic and efficacious drug combinations in cancer.
PLoS Comput. Biol.
Alina Malyutina, Muntasir Mamun Majumder, Wenyu Wang, Alberto Pessia, Caroline Heckman, Jing Tang
2019 J jnl
DrugComb: an integrative cancer drug combination data portal.
Nucleic Acids Res.
Bulat Zagidullin, Jehad Aldahdooh, Shuyu Zheng, Wenyu Wang, Yinyin Wang, Joseph Saad, Alina Malyutina, Mohieddin Jafari, ZiaurRehman Tanoli, Alberto Pessia, Jing Tang
2019 J jnl
Numerical evaluation of the transition probability of the simple birth-and-death process.
CoRR
Alberto Pessia, Jing Tang
2019 J jnl
Predicting Meridian in Chinese traditional medicine using machine learning approaches.
PLoS Comput. Biol.
Yinyin Wang, Mohieddin Jafari, Yun Tang, Jing Tang
2018 J jnl
Drug Target Commons 2.0: a community platform for systematic analysis of drug-target interaction profiles.
Database J. Biol. Databases Curation
ZiaurRehman Tanoli, Zaid Alam, Markus Vähä-Koskela, Balaguru Ravikumar, Alina Malyutina, Alok Jaiswal, Jing Tang, Krister Wennerberg, Tero Aittokallio
2017 J jnl
SynergyFinder: a web application for analyzing drug combination dose-response matrix data.
Bioinform.
Aleksandr Ianevski, Liye He, Tero Aittokallio, Jing Tang
2015 J jnl
A Bayesian Predictive Model for Clustering Data of Mixed Discrete and Continuous Type.
IEEE Trans. Pattern Anal. Mach. Intell.
Paul Blomstedt, Jing Tang, Jie Xiong, Christian Granlund, Jukka Corander
2015 J jnl
TIMMA-R: an R package for predicting synergistic multi-targeted drug combinations in cancer cell lines or patient-derived samples.
Bioinform.
Liye He, Krister Wennerberg, Tero Aittokallio, Jing Tang
2015 J jnl
Toward more realistic drug-target interaction predictions.
Briefings Bioinform.
Tapio Pahikkala, Antti Airola, Sami Pietilä, Sushil Kumar Shakyawar, Agnieszka Szwajda, Jing Tang, Tero Aittokallio
2014 J jnl
Making Sense of Large-Scale Kinase Inhibitor Bioactivity Data Sets: A Comparative and Integrative Analysis.
J. Chem. Inf. Model.
Jing Tang, Agnieszka Szwajda, Sushil Kumar Shakyawar, Tao Xu, Petteri Hintsanen, Krister Wennerberg, Tero Aittokallio
2013 J jnl
Target Inhibition Networks: Predicting Selective Combinations of Druggable Targets to Block Cancer Survival Pathways.
PLoS Comput. Biol.
Jing Tang, Leena Karhinen, Tao Xu, Agnieszka Szwajda, Bhagwan Yadav, Krister Wennerberg, Tero Aittokallio
2009 J jnl
Bayesian Clustering of Fuzzy Feature Vectors Using a Quasi-Likelihood Approach.
IEEE Trans. Pattern Anal. Mach. Intell.
Pekka Marttinen, Jing Tang, Bernard De Baets, Peter Dawyndt, Jukka Corander
2009 J jnl
Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach.
PLoS Comput. Biol.
Jing Tang, William P. Hanage, Christophe Fraser, Jukka Corander
2008 J jnl
Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations.
BMC Bioinform.
Jukka Corander, Pekka Marttinen, Jukka Sirén, Jing Tang