Jing Qin

13 papers Journal 13
YearRankTypeTitle / Venue / Authors
2025 J jnl
A self-attention-driven deep learning framework for inference of transcriptional gene regulatory networks.
Briefings Bioinform.
Yong Liu, Le Zhong, Bin Yan, Zhuobin Chen, Yanjia Yu, Dan Yu, Jing Qin, Junwen Wang
2025 J jnl
MSF-CPMP: a novel multi-source feature fusion model for prediction of cyclic peptide membrane permeability.
Briefings Bioinform.
Zimeng Chen, Yijun Zhang, Zhuxuan Wan, Qianhui Jiang, Xiaoling Lu, Bin Yan, Jing Qin, Yong Liu, Junwen Wang
2025 J jnl
TPepPro: a deep learning model for predicting peptide-protein interactions.
Bioinform.
Xiaohong Jin, Zimeng Chen, Dan Yu, Qianhui Jiang, Zhuobin Chen, Bin Yan, Jing Qin, Yong Liu, Junwen Wang
2022 J jnl
CORN - Condition Orientated Regulatory Networks: bridging conditions to gene networks.
Briefings Bioinform.
Ricky Wai Tak Leung, Xiaosen Jiang, Xueqing Zong, Yanhong Zhang, Xinlin Hu, Yaohua Hu, Jing Qin
2021 J jnl
Cell fate conversion prediction by group sparse optimization method utilizing single-cell and bulk OMICs data.
Briefings Bioinform.
Jing Qin, Yaohua Hu, Jen-Chih Yao, Ricky Wai Tak Leung, Yongqiang Zhou, Yiming Qin, Junwen Wang
2019 J jnl
ENPD - A Database of Eukaryotic Nucleic Acid Binding Proteins: Linking Gene Regulations to Proteins.
Nucleic Acids Res.
Ricky Wai Tak Leung, Xiaosen Jiang, Ka Hou Chu, Jing Qin
2017 J jnl
Group Sparse Optimization via lp, q Regularization.
J. Mach. Learn. Res.
Yaohua Hu, Chong Li, Kaiwen Meng, Jing Qin, Xiaoqi Yang
2016 J jnl
Applications of integrative OMICs approaches to gene regulation studies.
Quant. Biol.
Jing Qin, Bin Yan, Yaohua Hu, Panwen Wang, Junwen Wang
2015 J jnl
ChIP-Array 2: integrating multiple omics data to construct gene regulatory networks.
Nucleic Acids Res.
Panwen Wang, Jing Qin, Yiming Qin, Yun Zhu, Lily Yan Wang, Mulin Jun Li, Michael Q. Zhang, Junwen Wang
2015 J jnl
The Current Status and Challenges in Computational Analysis of Genomic Big Data.
Big Data Res.
Yiming Qin, Hari Krishna Yalamanchili, Jing Qin, Bin Yan, Junwen Wang
2014 J jnl
DDGni: Dynamic delay gene-network inference from high-temporal data using gapped local alignment.
Bioinform.
Hari Krishna Yalamanchili, Bin Yan, Mulin Jun Li, Jing Qin, Zhongying Zhao, Francis Y. L. Chin, Junwen Wang
2014 J jnl
PTHGRN: unraveling post-translational hierarchical gene regulatory networks using PPI, ChIP-seq and gene expression data.
Nucleic Acids Res.
Daogang Guan, Jiaofang Shao, Zhongying Zhao, Panwen Wang, Jing Qin, Youping Deng, Kenneth R. Boheler, Junwen Wang, Bin Yan
2011 J jnl
ChIP-Array: combinatory analysis of ChIP-seq/chip and microarray gene expression data to discover direct/indirect targets of a transcription factor.
Nucleic Acids Res.
Jing Qin, Mulin Jun Li, Panwen Wang, Michael Q. Zhang, Junwen Wang