Jin Liu

12 papers Journal 11Unranked 1
YearRankTypeTitle / Venue / Authors
2024 J jnl
Identification of Family-Specific Features in Cas9 and Cas12 Proteins: A Machine Learning Approach Using Complete Protein Feature Spectrum.
J. Chem. Inf. Model.
Sita Sirisha Madugula, Pranav Pujar, Bharani Nammi, Shouyi Wang, Vindi M. Jayasinghe-Arachchige, Tyler Pham, Dominic Mashburn, Maria Artiles, Jin Liu
2023 J jnl
Leveraging QM/MM and Molecular Dynamics Simulations to Decipher the Reaction Mechanism of the Cas9 HNH Domain to Investigate Off-Target Effects.
J. Chem. Inf. Model.
Yazdan Maghsoud, Vindi M. Jayasinghe-Arachchige, Pratibha Kumari, G. Andrés Cisneros, Jin Liu
2022 J jnl
Sparse group selection and analysis of function-related residue for protein-state recognition.
J. Comput. Chem.
Fangyun Bai, Kin Ming Puk, Jin Liu, Hongyu Zhou, Peng Tao, Wenyong Zhou, Shouyi Wang
2021 — conf
Allosteric Modulation of Small Molecule Drugs on ACE2 Conformational Change upon Binding to SARS-CoV-2 Spike Protein.
BIBM
Duen-Shian Wang, Hamed S. Hayatshahi, Vindi M. Jayasinghe-Arachchige, Jin Liu
2021 J jnl
Factors Governing Selectivity of Dopamine Receptor Binding Compounds for D2R and D3R Subtypes.
J. Chem. Inf. Model.
Hamed S. Hayatshahi, Robert R. Luedtke, Michelle Taylor, Peng-Jen Chen, Benjamin E. Blass, Jin Liu
2019 J jnl
Assessing the Performance of the Nonbonded Mg2+ Models in a Two-Metal-Dependent Ribonuclease.
J. Chem. Inf. Model.
Zhicheng Zuo, Jin Liu
2019 J jnl
Probing Protein Allostery as a Residue-Specific Concept via Residue Response Maps.
J. Chem. Inf. Model.
Hamed S. Hayatshahi, Emilio Ahuactzin, Peng Tao, Shouyi Wang, Jin Liu
2016 J jnl
Allostery: An Overview of Its History, Concepts, Methods, and Applications.
PLoS Comput. Biol.
Jin Liu, Ruth Nussinov
2016 J jnl
Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery.
PLoS Comput. Biol.
Robert Kalescky, Hongyu Zhou, Jin Liu, Peng Tao
2012 J jnl
2D SMARTCyp Reactivity-Based Site of Metabolism Prediction for Major Drug-Metabolizing Cytochrome P450 Enzymes.
J. Chem. Inf. Model.
Ruifeng Liu, Jin Liu, Gregory J. Tawa, Anders Wallqvist
2012 J jnl
Quantitative Predictions of Binding Free Energy Changes in Drug-Resistant Influenza Neuraminidase.
PLoS Comput. Biol.
Daniel R. Ripoll, Ilja V. Khavrutskii, Sidhartha Chaudhury, Jin Liu, Robert A. Kuschner, Anders Wallqvist, Jaques Reifman
2009 J jnl
The Mechanism of Ubiquitination in the Cullin-RING E3 Ligase Machinery: Conformational Control of Substrate Orientation.
PLoS Comput. Biol.
Jin Liu, Ruth Nussinov