Jin Chen

63 papers A 1B 3C 1Misc 4Journal 33Unranked 21
YearRankTypeTitle / Venue / Authors
2024 J jnl
Accurately deciphering spatial domains for spatially resolved transcriptomics with stCluster.
Briefings Bioinform.
Tao Wang, Han Shu, Jialu Hu, Yongtian Wang, Jin Chen, Jiajie Peng, Xuequn Shang
2024 J jnl
Text2MDT: Extracting Medical Decision Trees from Medical Texts.
CoRR
Wei Zhu, Wenfeng Li, Xing Tian, Pengfei Wang, Xiaoling Wang, Jin Chen, Yuanbin Wu, Yuan Ni, Guotong Xie
2024 J jnl
postGWAS: A web server for deciphering the causality post the genome-wide association studies.
Comput. Biol. Medicine
Tao Wang, Zhihao Yan, Yiming Zhang, Zhuofei Lou, Xiaozhu Zheng, Duoduo Mai, Yongtian Wang, Xuequn Shang, Bing Xiao, Jiajie Peng, Jin Chen
2023 J jnl
A Comparative Effectiveness Study on Opioid Use Disorder Prediction Using Artificial Intelligence and Existing Risk Models.
IEEE J. Biomed. Health Informatics
Sajjad Fouladvand, Jeffery C. Talbert, Linda P. Dwoskin, Heather Bush, Amy Lynn Meadows, Lars E. Peterson, Yash R. Mishra, Steven K. Roggenkamp, Fei Wang, Ramakanth Kavuluru, Jin Chen
2023 — conf
Assessing Fairness of AlphaFold2 Prediction of Protein 3D Structures.
BCB
Usman L. Abbas, Jin Chen, Qing Shao
2023 J jnl
DiffusionCT: Latent Diffusion Model for CT Image Standardization.
CoRR
Md. Selim, Jie Zhang, Michael A. Brooks, Ge Wang, Jin Chen
2022 J jnl
Correction to: Enhancing discoveries of molecular QTL studies with small sample size using summary statistic imputation.
Briefings Bioinform.
Tao Wang, Yongzhuang Liu, Quanwei Yin, Jiaquan Geng, Jin Chen, Xipeng Yin, Yongtian Wang, Xuequn Shang, Chunwei Tian, Yadong Wang, Jiajie Peng
2022 J jnl
Enhancing discoveries of molecular QTL studies with small sample size using summary statistic imputation.
Briefings Bioinform.
Tao Wang, Yongzhuang Liu, Quanwei Yin, Jiaquan Geng, Jin Chen, Xipeng Yin, Yongtian Wang, Xuequn Shang, Chunwei Tian, Yadong Wang, Jiajie Peng
2022 — conf
KIT-LSTM: Knowledge-guided Time-aware LSTM for Continuous Clinical Risk Prediction.
BIBM
Lucas Jing Liu, Victor Ortiz-Soriano, Javier A. Neyra, Jin Chen
2022 — conf
UDA-CT: A General Framework for CT Image Standardization.
BIBM
Md. Selim, Jie Zhang, Baowei Fei, Matthew A. Lewis, Guo-Qiang Zhang, Jin Chen
2021 — conf
Alzheimer's Disease Classification Using Genetic Data.
BIBM
Subash Khanal, Jin Chen, Nathan Jacobs, Ai-Ling Lin
2021 — conf
CT Image Harmonization for Enhancing Radiomics Studies.
BIBM
Md. Selim, Jie Zhang, Baowei Fei, Guo-Qiang Zhang, Jin Chen
2021 J jnl
CT Image Harmonization for Enhancing Radiomics Studies.
CoRR
Md. Selim, Jie Zhang, Baowei Fei, Guo-Qiang Zhang, Jin Chen
2021 Misc conf
Cross-Vendor CT Image Data Harmonization Using CVH-CT.
AMIA
Md. Selim, Jie Zhang, Baowei Fei, Guo-Qiang Zhang, Gary Yeeming Ge, Jin Chen
2021 J jnl
Cross-Vendor CT Image Data Harmonization Using CVH-CT.
CoRR
Md. Selim, Jie Zhang, Baowei Fei, Guo-Qiang Zhang, Gary Yeeming Ge, Jin Chen
2021 Misc conf
Identifying Opioid Use Disorder from Longitudinal Healthcare Data using a Multi-stream Transformer.
AMIA
Sajjad Fouladvand, Jeffery C. Talbert, Linda P. Dwoskin, Heather M. Bush, Amy Lynn Meadows, Lars E. Peterson, Steve K. Roggenkamp, Ramakanth Kavuluru, Jin Chen
2021 — conf
KGDAL: knowledge graph guided double attention LSTM for rolling mortality prediction for AKI-D patients.
BCB
Lucas Jing Liu, Victor Ortiz-Soriano, Javier A. Neyra, Jin Chen
2021 J jnl
Predicting Opioid Use Disorder from Longitudinal Healthcare Data using Multi-stream Transformer.
CoRR
Sajjad Fouladvand, Jeffery C. Talbert, Linda P. Dwoskin, Heather Bush, Amy Lynn Meadows, Lars E. Peterson, Ramakanth Kavuluru, Jin Chen
2021 J jnl
SSRE: Cell Type Detection Based on Sparse Subspace Representation and Similarity Enhancement.
Genom. Proteom. Bioinform.
Zhenlan Liang, Min Li, Ruiqing Zheng, Yu Tian, Xuhua Yan, Jin Chen, Fang-Xiang Wu, Jianxin Wang
2020 J jnl
ELMV: a Ensemble-Learning Approach for Analyzing Electrical Health Records with Significant Missing Values.
CoRR
Lucas Jing Liu, Hongwei Zhang, Jianzhong Di, Jin Chen
2020 — conf
ELMV: an Ensemble-Learning Approach for Analyzing Electrical Health Records with Significant Missing Values.
BCB
Lucas Jing Liu, Hongwei Zhang, Jianzhong Di, Jin Chen
2020 J jnl
Identifying emerging phenomenon in long temporal phenotyping experiments.
Bioinform.
Jiajie Peng, Junya Lu, Donghee Hoh, Ayesha S. Dina, Xuequn Shang, David M. Kramer, Jin Chen
2020 J jnl
Mining Relationships among Multiple Entities in Biological Networks.
IEEE ACM Trans. Comput. Biol. Bioinform.
Jiajie Peng, Linjiao Zhu, Yadong Wang, Jin Chen
2020 J jnl
Predicting substance use disorder using long-term attention deficit hyperactivity disorder medication records in Truven.
Health Informatics J.
Sajjad Fouladvand, Emily R. Hankosky, Heather Bush, Jin Chen, Linda P. Dwoskin, Patricia R. Freeman, Darren W. Henderson, Kathleen Kantak, Jeffery C. Talbert, Shiqiang Tao, Guo-Qiang Zhang
2020 J jnl
STAN-CT: Standardizing CT Image using Generative Adversarial Network.
CoRR
Md. Selim, Jie Zhang, Baowei Fei, Guo-Qiang Zhang, Jin Chen
2020 Misc conf
STAN-CT: Standardizing CT Image using Generative Adversarial Networks.
AMIA
Md. Selim, Jie Zhang, Baowei Fei, Guo-Qiang Zhang, Jin Chen
2019 — conf
A Knowledge Graph Enhanced Topic Modeling Approach for Herb Recommendation.
DASFAA (1)
Xinyu Wang, Ying Zhang, Xiaoling Wang, Jin Chen
2019 — conf
DoRC: Discovery of rare cells from ultra-large scRNA-seq data.
BIBM
Xiang Chen, Fang-Xiang Wu, Jin Chen, Min Li
2019 — conf
GANai: Standardizing CT Images using Generative Adversarial Network with Alternative Improvement.
ICHI
Gongbo Liang, Sajjad Fouladvand, Jie Zhang, Michael A. Brooks, Nathan Jacobs, Jin Chen
2019 — conf
Identifying Acute Kidney Injury Trajectory Phenotypes Associated with Hospital Mortality.
ICHI
Taylor D. Smith, Victor Ortiz-Soriano, Javier A. Neyra, Jin Chen
2019 — conf
Insomnia Prediction Using Temporal Feature of Spindles.
ICHI
Hao Yu, Ying Zhang, Jin Chen, Shiqiang Tao, Taylor D. Smith, Guo-Qiang Zhang, Xiaojin Li, Xiaoqian Jiang, Xiaoling Wang, Xinyu Wang
2019 — conf
MC-eLDA: Towards Pathogenesis Analysis in Traditional Chinese Medicine by Multi-Content Embedding LDA.
PAKDD (1)
Ying Zhang, Wendi Ji, Haofen Wang, Xiaoling Wang, Jin Chen
2018 — conf
Chrysanthemum Abnormal Petal Type Classification using Random Forest and Over-sampling.
BIBM
Peisen Yuan, Shougang Ren, Huanliang Xu, Jin Chen
2018 Misc conf
Enhancing Radiomic Features of CT Images using Generative Adversarial Network with Alternative Improvement.
AMIA
Gongbo Liang, Jie Zhang, Michael A. Brooks, Jessica Howard, Jin Chen
2018 — conf
Identifying Representative Network Motifs for Inferring Higher-order Structure of Biological Networks.
BIBM
Tao Wang, Jiajie Peng, Yadong Wang, Jin Chen
2018 J jnl
Joint Multi-Leaf Segmentation, Alignment, and Tracking for Fluorescence Plant Videos.
IEEE Trans. Pattern Anal. Mach. Intell.
Xi Yin, Xiaoming Liu, Jin Chen, David M. Kramer
2018 — conf
OLIVER: A Tool for Visual Data Analysis on Longitudinal Plant Phenomics Data.
BIBM
Oliver L. Tessmer, David M. Kramer, Jin Chen
2018 — conf
Predicting Substance Use Disorder in ADHD Patients using Long-Short Term Memory Model.
ICHI Workshops
Sajjad Fouladvand, Emily R. Hankosky, Darren W. Henderson, Heather Bush, Jin Chen, Linda P. Dwoskin, Patricia R. Freeman, Kathleen Kantak, Jeffery C. Talbert, Shiqiang Tao, Guo-Qiang Zhang
2017 J jnl
A novel method to measure the semantic similarity of HPO terms.
Int. J. Data Min. Bioinform.
Jiajie Peng, Hansheng Xue, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen
2017 J jnl
PhenoCurve: capturing dynamic phenotype-environment relationships using phenomics data.
Bioinform.
Yifan Yang, Lei Xu, Zheyun Feng, Jeffrey A. Cruz, Linda J. Savage, David M. Kramer, Jin Chen
2016 J jnl
Extending gene ontology with gene association networks.
Bioinform.
Jiajie Peng, Tao Wang, Jixuan Wang, Yadong Wang, Jin Chen
2016 — conf
Growing Depth Image Superpixels for Foliage Modeling.
CRV
Daniel D. Morris, Saif Muhammad Imran, Jin Chen, David M. Kramer
2016 J jnl
Inter-functional analysis of high-throughput phenotype data by non-parametric clustering and its application to photosynthesis.
Bioinform.
Qiaozi Gao, Elisabeth Ostendorf, Jeffrey A. Cruz, Rong Jin, David M. Kramer, Jin Chen
2016 — conf
Measuring phenotype semantic similarity using Human Phenotype Ontology.
BIBM
Jiajie Peng, Hansheng Xue, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen
2016 J jnl
Multi-modality imagery database for plant phenotyping.
Mach. Vis. Appl.
Jeffrey A. Cruz, Xi Yin, Xiaoming Liu, Saif Muhammad Imran, Daniel D. Morris, David M. Kramer, Jin Chen
2015 — conf
A web tool for measuring gene semantic similarities by combining gene ontology and gene co-function networks.
BCB
Jiajie Peng, Hongxiang Li, Yadong Wang, Jin Chen
2015 — conf
Improving biological significance of gene expression biclusters with key missing genes.
BCB
Shufan Ji, Xing Tian, Jin Chen
2015 C conf
Incremental Distributed Weighted Class Discriminant Analysis on Interval-Valued Emitter Parameters.
KSEM
Xin Xu, Wei Wang, Jiaheng Lu, Jin Chen
2015 J jnl
Joint Multi-Leaf Segmentation, Alignment and Tracking from Fluorescence Plant Videos.
CoRR
Xi Yin, Xiaoming Liu, Jin Chen, David M. Kramer
2015 J jnl
Measuring semantic similarities by combining gene ontology annotations and gene co-function networks.
BMC Bioinform.
Jiajie Peng, Sahra Uygun, Taehyong Kim, Yadong Wang, Seung Y. Rhee, Jin Chen
2015 J jnl
Plant photosynthesis phenomics data quality control.
Bioinform.
Lei Xu, Jeffrey A. Cruz, Linda J. Savage, David M. Kramer, Jin Chen
2014 J jnl
An integrative approach for measuring semantic similarities using gene ontology.
BMC Syst. Biol.
Jiajie Peng, Hongxiang Li, Qinghua Jiang, Yadong Wang, Jin Chen
2014 A conf
Multi-leaf alignment from fluorescence plant images.
WACV
Xi Yin, Xiaoming Liu, Jin Chen, David M. Kramer
2014 B conf
Multi-leaf tracking from fluorescence plant videos.
ICIP
Xi Yin, Xiaoming Liu, Jin Chen, David M. Kramer
2014 J jnl
Towards integrative gene functional similarity measurement.
BMC Bioinform.
Jiajie Peng, Yadong Wang, Jin Chen
2014 J jnl
Wireless Spectrum Occupancy Prediction Based on Partial Periodic Pattern Mining.
IEEE Trans. Parallel Distributed Syst.
Pei Huang, Chin-Jung Liu, Xi Yang, Li Xiao, Jin Chen
2013 J jnl
Functional approach to high-throughput plant growth analysis.
BMC Syst. Biol.
Oliver L. Tessmer, Yuhua Jiao, Jeffrey A. Cruz, David M. Kramer, Jin Chen
2013 J jnl
Identifying cross-category relations in gene ontology and constructing genome-specific term association networks.
BMC Bioinform.
Jiajie Peng, Jin Chen, Yadong Wang
2012 J jnl
Detection and Decomposition: Treatment-induced Cyclic gene Expression Disruption in High-Throughput Time-Series Datasets.
J. Bioinform. Comput. Biol.
Yuhua Jiao, Bruce A. Rosa, Sookyung Oh, Beronda L. Montgomery, Wensheng Qin, Jin Chen
2012 J jnl
Frequency-based time-series gene expression recomposition using PRIISM.
BMC Syst. Biol.
Bruce A. Rosa, Yuhua Jiao, Sookyung Oh, Beronda L. Montgomery, Wensheng Qin, Jin Chen
2012 B conf
Mining frequent partial periodic patterns in spectrum usage data.
IWQoS
Pei Huang, Chin-Jung Liu, Li Xiao, Jin Chen
2012 J jnl
Optimal timepoint sampling in high-throughput gene expression experiments.
Bioinform.
Bruce A. Rosa, Ji Zhang, Ian T. Major, Wensheng Qin, Jin Chen
2012 B conf
Wireless Spectrum Occupancy Prediction Based on Partial Periodic Pattern Mining.
MASCOTS
Pei Huang, Chin-Jung Liu, Li Xiao, Jin Chen