Jin-Dong Kim

94 papers A* 4A 1B 9C 2Misc 1Journal 28Unranked 43
YearRankTypeTitle / Venue / Authors
2025 J jnl
Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features.
J. Biomed. Semant.
Shuya Ikeda, Kiyoko F. Aoki-Kinoshita, Hirokazu Chiba, Susumu Goto, Masae Hosoda, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Tazro Ohta, Hiromasa Ono, Terue Takatsuki, Yasunori Yamamoto, Toshiaki Katayama
2025 — conf
Repurposing Annotation Guidelines to Instruct LLM Annotators: A Case Study.
NLDB (2)
Kon Woo Kim, Rezarta Islamaj, Jin-Dong Kim, Florian Boudin, Akiko Aizawa
2025 J jnl
Repurposing Annotation Guidelines to Instruct LLM Annotators: A Case Study.
CoRR
Kon Woo Kim, Rezarta Islamaj, Jin-Dong Kim, Florian Boudin, Akiko Aizawa
2022 B conf
COVID-19 Mythbusters in World Languages.
LREC
Mana Ashida, Jin-Dong Kim, Seunghun Lee
2022 J jnl
High-quality gene/disease embedding in a multi-relational heterogeneous graph after a joint matrix/tensor decomposition.
J. Biomed. Informatics
Kaiyin Zhou, Sheng Zhang, Yuxing Wang, Kevin Bretonnel Cohen, Jin-Dong Kim, Qi Luo, Xinzhi Yao, Xingyu Zhou, Jingbo Xia
2022 J jnl
Knowledge-Driven Mechanistic Enrichment of the Preeclampsia Ignorome.
CoRR
Tiffany J. Callahan, Adrianne L. Stefanski, Jin-Dong Kim, William A. Baumgartner Jr., Jordan M. Wyrwa, Lawrence E. Hunter
2021 J jnl
Bridging heterogeneous mutation data to enhance disease gene discovery.
Briefings Bioinform.
Kaiyin Zhou, Yuxing Wang, Kevin Bretonnel Cohen, Jin-Dong Kim, Xiaohang Ma, Zhixue Shen, Xiangyu Meng, Jingbo Xia
2020 J jnl
BioHackathon 2015: Semantics of data for life sciences and reproducible research.
F1000Research
Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi
2020 C conf
Enhancing Quality of Corpus Annotation: Construction of the Multi-Layer Corpus Annotation and Simplified Validation of the Corpus Annotation.
PACLIC
Youngbin Noh, Kuntae Kim, Minho Lee, Cheolhun Heo, Yongbin Jeong, Yoosung Jeong, Younggyun Hahm, Taehwan Oh, Hyonsu Choe, Seokwon Park, Jin-Dong Kim, Key-Sun Choi
2020 — conf
Towards Standardization of Web Service Protocols for NLPaaS.
IWLTP@LREC
Jin-Dong Kim, Nancy Ide, Keith Suderman
2019 — conf
A Multi-Platform Annotation Ecosystem for Domain Adaptation.
LAW@ACL
Richard Eckart de Castilho, Nancy Ide, Jin-Dong Kim, Jan-Christoph Klie, Keith Suderman
2019 — conf
An Active Gene Annotation Corpus and Its Application on Anti-epilepsy Drug Discovery.
BIBM
Yuxing Wang, Jingbo Xia, Kaiyin Zhou, Jin-Dong Kim, Kevin Cohen, Mina Gachloo, Yuxin Ren, Shanghui Nie, Xuan Qin, Panzhong Lu
2019 J jnl
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services.
F1000Research
Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi
2019 J jnl
Open Agile text mining for bioinformatics: the PubAnnotation ecosystem.
Bioinform.
Jin-Dong Kim, Yue Wang, Toyofumi Fujiwara, Shujiro Okuda, Tiffany J. Callahan, K. Bretonnel Cohen
2019 — ed.
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, BioNLP-OST@EMNLP-IJNCLP 2019, Hong Kong, China, November 4, 2019
BioNLP-OST@EMNLP-IJNCLP
Jin-Dong Kim, Claire Nédellec, Robert Bossy, Louise Deléger
2018 — conf
A Quantitative Evaluation of Natural Language Question Interpretation for Question Answering Systems.
JIST
Takuto Asakura, Jin-Dong Kim, Yasunori Yamamoto, Yuka Tateisi, Toshihisa Takagi
2018 J jnl
A Quantitative Evaluation of Natural Language Question Interpretation for Question Answering Systems.
CoRR
Takuto Asakura, Jin-Dong Kim, Yasunori Yamamoto, Yuka Tateisi, Toshihisa Takagi
2018 — conf
Analysis of Distant Supervision for Relation Extraction Dataset.
ISWC (P&D/Industry/BlueSky)
Kijong Han, Sangha Nam, Younggyun Hahm, Jiseong Kim, Jiho Kim, Jin-Dong Kim, Key-Sun Choi
2018 — conf
Guideline Design of an Active Gene Annotation Corpus for the Purpose of Drug Repurposing.
CISP-BMEI
Yuxing Wang, Xinzhi Yao, Kaiyin Zhou, Xuan Qin, Jin-Dong Kim, Kevin Bretonnel Cohen, Jingbo Xia
2018 — ed.
Joint proceedings of the 4th Workshop on Semantic Deep Learning (SemDeep-4) and NLIWoD4: Natural Language Interfaces for the Web of Data (NLIWOD-4) and 9th Question Answering over Linked Data challenge (QALD-9) co-located with 17th International Semantic Web Conference (ISWC 2018), Monterey, California, United States of America, October 8th - 9th, 2018.
SemDeep//NLIWoD@ISWC
Key-Sun Choi, Luis Espinosa Anke, Thierry Declerck, Dagmar Gromann, Jin-Dong Kim, Axel-Cyrille Ngonga Ngomo, Muhammad Saleem, Ricardo Usbeck
2018 B conf
Mining Biomedical Publications With The LAPPS Grid.
LREC
Nancy Ide, Keith Suderman, Jin-Dong Kim
2018 — conf
Trigger Words Detection by Integrating Attention Mechanism into Bi-LSTM Neural Network - A Case Study in PubMED-Wide Trigger Words Detection for Pancreatic Cancer.
CCL
Kaiyin Zhou, Xinzhi Yao, Shuguang Wang, Jin-Dong Kim, Kevin Bretonnel Cohen, Ruiying Chen, Yuxing Wang, Jingbo Xia
2017 J jnl
Biomedical Natural Language Processing.
Comput. Linguistics
Jin-Dong Kim
2017 — ed.
Joint Proceedings of BLINK2017: 2nd International Workshop on Benchmarking Linked Data and NLIWoD3: Natural Language Interfaces for the Web of Data co-located with 16th International Semantic Web Conference (ISWC 2017), Vienna, Austria, October 21st - to - 22nd, 2017.
BLINK/NLIWoD3@ISWC
Ricardo Usbeck, Axel-Cyrille Ngonga Ngomo, Jin-Dong Kim, Key-Sun Choi, Philipp Cimiano, Irini Fundulaki, Anastasia Krithara
2017 — conf
OKBQA: an Open Collaboration Framework for Development of Natural Language Question-Answering over Knowledge Bases.
ISWC (Posters, Demos & Industry Tracks)
Jin-Dong Kim, Christina Unger, Axel-Cyrille Ngonga Ngomo, André Freitas, Younggyun Hahm, Jiseong Kim, Gyu-Hyun Choi, Jeonguk Kim, Ricardo Usbeck, Myoung-Gu Kang, Key-Sun Choi
2017 A* conf
SIGIR 2017 Workshop on Open Knowledge Base and Question Answering (OKBQA2017).
SIGIR
Key-Sun Choi, Teruko Mitamura, Piek Vossen, Jin-Dong Kim, Axel-Cyrille Ngonga Ngomo
2016 — ed.
Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, Berlin, Germany, August 13, 2016
BioNLP (Shared Task)
Claire Nedellec, Robert Bossy, Jin-Dong Kim
2016 — conf
Refactoring the Genia Event Extraction Shared Task Toward a General Framework for IE-Driven KB Development.
BioNLP (Shared Task)
Jin-Dong Kim, Yue Wang, Nicola Colic, Seung-Han Baek, Yong Hwan Kim, Min Song
2015 — conf
Dynamic Join Order Optimization for SPARQL Endpoint Federation.
SSWS@ISWC
Hongyan Wu, Atsuko Yamaguchi, Jin-Dong Kim
2015 J jnl
Extending the evaluation of Genia Event task toward knowledge base construction and comparison to Gene Regulation Ontology task.
BMC Bioinform.
Jin-Dong Kim, Jung-Jae Kim, Xu Han, Dietrich Rebholz-Schuhmann
2014 J jnl
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
J. Biomed. Semant.
Toshiaki Katayama, Mark D. Wilkinson, Kiyoko F. Aoki-Kinoshita, Shuichi Kawashima, Yasunori Yamamoto, Atsuko Yamaguchi, Shinobu Okamoto, Shin Kawano, Jin-Dong Kim, Yue Wang, Hongyan Wu, Yoshinobu Kano, Hiromasa Ono, Hidemasa Bono, Simon Kocbek, Jan Aerts, Yukie Akune, Erick Antezana, Kazuharu Arakawa, Bruno Aranda, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Pier Luigi Buttigieg, Matthew P. Campbell, Yi-An Chen, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Alexandru Constantin
2013 B conf
A Generalized LCS Algorithm and Its Application to Corpus Alignment.
IJCNLP
Jin-Dong Kim
2013 — conf
Evaluation of SPARQL query generation from natural language questions.
SWAIE@RANLP
K. Bretonnel Cohen, Jin-Dong Kim
2013 J jnl
Introducing glycomics data into the Semantic Web.
J. Biomed. Semant.
Kiyoko F. Aoki-Kinoshita, Jerven T. Bolleman, Matthew P. Campbell, Shin Kawano, Jin-Dong Kim, Thomas Lütteke, Masaaki Matsubara, Shujiro Okuda, René Ranzinger, Hiromichi Sawaki, Toshihide Shikanai, Daisuke Shinmachi, Yoshinori Suzuki, Philip V. Toukach, Issaku Yamada, Nicolle H. Packer, Hisashi Narimatsu
2013 J jnl
Literature Mining Solutions for Life Science Research.
Adv. Bioinformatics
Jörg Hakenberg, Goran Nenadic, Dietrich Rebholz-Schuhmann, Jin-Dong Kim
2013 — conf
Overview of BioNLP Shared Task 2013.
BioNLP@ACL (Shared Task)
Claire Nédellec, Robert Bossy, Jin-Dong Kim, Jung-Jae Kim, Tomoko Ohta, Sampo Pyysalo, Pierre Zweigenbaum
2013 — ed.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, Bulgaria, August 9, 2013
BioNLP@ACL (Shared Task)
Claire Nédellec, Robert Bossy, Jin-Dong Kim, Jung-Jae Kim, Tomoko Ohta, Sampo Pyysalo, Pierre Zweigenbaum
2013 — conf
The Genia Event Extraction Shared Task, 2013 Edition - Overview.
BioNLP@ACL (Shared Task)
Jin-Dong Kim, Yue Wang, Yasunori Yamamoto
2013 — conf
Visualizing ontology mappings to help ontology engineers identify relevant ontologies for their reuse.
ICBO
Simon Kocbek, Jin-Dong Kim, Jean-Luc Perret, Patricia L. Whetzel
2012 — conf
Boosting the protein name recognition performance by bootstrapping on selected text.
BioNLP@HLT-NAACL
Yue Wang, Jin-Dong Kim
2012 — conf
CSAF - a community-sourcing annotation framework.
LAW@ACL
Jin-Dong Kim, Yue Wang
2012 J jnl
Improving protein coreference resolution by simple semantic classification.
BMC Bioinform.
Ngan L. T. Nguyen, Jin-Dong Kim, Makoto Miwa, Takuya Matsuzaki, Junichi Tsujii
2012 — conf
New Resources and Perspectives for Biomedical Event Extraction.
BioNLP@HLT-NAACL
Sampo Pyysalo, Pontus Stenetorp, Tomoko Ohta, Jin-Dong Kim, Sophia Ananiadou
2012 — conf
PubAnnotation - a persistent and sharable corpus and annotation repository.
BioNLP@HLT-NAACL
Jin-Dong Kim, Yue Wang
2012 J jnl
The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011.
BMC Bioinform.
Jin-Dong Kim, Ngan L. T. Nguyen, Yue Wang, Jun'ichi Tsujii, Toshihisa Takagi, Akinori Yonezawa
2012 — conf
Visual Presentation of Mappings Between Biomedical Ontologies.
SWAT4LS
Simon Kocbek, Jean-Luc Perret, Jin-Dong Kim
2011 J jnl
AGRA: analysis of gene ranking algorithms.
Bioinform.
Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii
2011 — conf
BioNLP Shared Task 2011: Supporting Resources.
BioNLP@ACL (Shared Task)
Pontus Stenetorp, Goran Topic, Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim, Jun'ichi Tsujii
2011 — conf
Discriminative Application of String Similarity Methods to Chemical and Non-chemical Names for Biomedical Abbreviation Clustering.
BIBM
Atsuko Yamaguchi, Yasunori Yamamoto, Jin-Dong Kim, Toshihisa Takagi, Akinori Yonezawa
2011 — conf
Discriminative Optimization of String Similarity and Its Application to Biomedical Abbreviation Clustering.
ICMLA (2)
Atsuko Yamaguchi, Yasunori Yamamoto, Jin-Dong Kim, Toshihisa Takagi, Akinori Yonezawa
2011 J jnl
Extracting Bio-molecular Events from literature - the BioNLP'09 Shared Task.
Comput. Intell.
Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, Jun'ichi Tsujii
2011 — conf
Overview of BioNLP 2011 Protein Coreference Shared Task.
BioNLP@ACL (Shared Task)
Ngan L. T. Nguyen, Jin-Dong Kim, Jun'ichi Tsujii
2011 — conf
Overview of BioNLP Shared Task 2011.
BioNLP@ACL (Shared Task)
Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Robert Bossy, Ngan L. T. Nguyen, Jun'ichi Tsujii
2011 — conf
Overview of Genia Event Task in BioNLP Shared Task 2011.
BioNLP@ACL (Shared Task)
Jin-Dong Kim, Yue Wang, Toshihisa Takagi, Akinori Yonezawa
2011 — conf
Parsing Natural Language Queries for Life Science Knowledge.
BioNLP@ACL
Tadayoshi Hara, Yuka Tateisi, Jin-Dong Kim, Yusuke Miyao
2011 — conf
Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publications.
ICCABS
Simon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun'ichi Tsujii
2011 — ed.
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011
BioNLP@ACL (Shared Task)
Jun'ichi Tsujii, Jin-Dong Kim, Sampo Pyysalo
2011 J jnl
U-Compare bio-event meta-service: compatible BioNLP event extraction services.
BMC Bioinform.
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
2010 J jnl
A Re-Evaluation of Biomedical Named Entity-Term Relations.
J. Bioinform. Comput. Biol.
Tomoko Ohta, Sampo Pyysalo, Jin-Dong Kim, Jun'ichi Tsujii
2010 — conf
Event Extraction for Post-Translational Modifications.
BioNLP@ACL
Tomoko Ohta, Sampo Pyysalo, Makoto Miwa, Jin-Dong Kim, Jun'ichi Tsujii
2010 J jnl
Event Extraction with Complex Event Classification Using Rich Features.
J. Bioinform. Comput. Biol.
Makoto Miwa, Rune Sætre, Jin-Dong Kim, Jun'ichi Tsujii
2010 — conf
Extracting Protein Sub-cellular Localizations from Literature.
AMT
Hong-Woo Chun, Jin-Dong Kim, Yunsoo Choi, Won-Kyung Sung
2010 J jnl
Improving the Inter-Corpora Compatibility for protein Annotations.
J. Bioinform. Comput. Biol.
Yue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
2010 — conf
Natural Language Query Processing for Life Science Knowledge - Position Paper.
AMT
Jin-Dong Kim, Yasunori Yamamoto, Atsuko Yamaguchi, Mitsuteru Nakao, Kenta Oouchida, Hong-Woo Chun, Toshihisa Takagi
2009 — conf
Bridging the Gap between Domain-Oriented and Linguistically-Oriented Semantics.
BioNLP@HLT-NAACL
Sumire Uematsu, Jin-Dong Kim, Jun'ichi Tsujii
2009 C conf
GuideLink: A Corpus Annotation System that Integrates the Management of Annotation Guidelines.
PACLIC
Kenta Oouchida, Jin-Dong Kim, Toshihisa Takagi, Jun'ichi Tsujii
2009 — conf
Incorporating GENETAG-style annotation to GENIA corpus.
BioNLP@HLT-NAACL
Tomoko Ohta, Jin-Dong Kim, Sampo Pyysalo, Yue Wang, Jun'ichi Tsujii
2009 J jnl
Investigating heterogeneous protein annotations toward cross-corpora utilization.
BMC Bioinform.
Yue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Jun'ichi Tsujii
2009 A conf
Opinion classification with tree kernel SVM using linguistic modality analysis.
CIKM
Takeshi S. Kobayakawa, Tadashi Kumano, Hideki Tanaka, Naoaki Okazaki, Jin-Dong Kim, Jun'ichi Tsujii
2009 — conf
Overview of BioNLP'09 Shared Task on Event Extraction.
BioNLP@HLT-NAACL (Shared Task)
Jin-Dong Kim, Tomoko Ohta, Sampo Pyysalo, Yoshinobu Kano, Jun'ichi Tsujii
2009 — conf
Static Relations: a Piece in the Biomedical Information Extraction Puzzle.
BioNLP@HLT-NAACL
Sampo Pyysalo, Tomoko Ohta, Jin-Dong Kim, Jun'ichi Tsujii
2008 B conf
Challenges in Pronoun Resolution System for Biomedical Text.
LREC
Ngan L. T. Nguyen, Jin-Dong Kim, Jun'ichi Tsujii
2008 J jnl
Corpus annotation for mining biomedical events from literature.
BMC Bioinform.
Jin-Dong Kim, Tomoko Ohta, Jun'ichi Tsujii
2008 B conf
Exploring Domain Differences for the Design of a Pronoun Resolution System for Biomedical Text.
COLING
Ngan L. T. Nguyen, Jin-Dong Kim
2008 B conf
From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature.
APBC
Jin-Dong Kim, Tomoko Ohta, Kanae Oda, Jun'ichi Tsujii
2008 J jnl
New challenges for text mining: mapping between text and manually curated pathways.
BMC Bioinform.
Kanae Oda, Jin-Dong Kim, Tomoko Ohta, Daisuke Okanohara, Takuya Matsuzaki, Yuka Tateisi, Jun'ichi Tsujii
2008 — conf
Prediction of Protein Sub-cellular Localization using Information from Texts and Sequences.
BioNLP
Hong-Woo Chun, Chisato Yamasaki, Naomi Saichi, Masayuki Tanaka, Teruyoshi Hishiki, Tadashi Imanishi, Takashi Gojobori, Jin-Dong Kim, Jun'ichi Tsujii, Toshihisa Takagi
2008 — conf
Raising the Compatibility of Heterogeneous Annotations: A Case Study on.
BioNLP
Yue Wang, Kazuhiro Yoshida, Jin-Dong Kim, Rune Saetre, Jun'ichi Tsujii
2006 A* conf
An Intelligent Search Engine and GUI-based Efficient MEDLINE Search Tool Based on Deep Syntactic Parsing.
ACL
Tomoko Ohta, Yusuke Miyao, Takashi Ninomiya, Yoshimasa Tsuruoka, Akane Yakushiji, Katsuya Masuda, Jumpei Takeuchi, Kazuhiro Yoshida, Tadayoshi Hara, Jin-Dong Kim, Yuka Tateisi, Jun'ichi Tsujii
2006 — conf
Automatic Recognition of Topic-Classified Relations between Prostate Cancer and Genes from Medline Abstracts.
SMBM
Hong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, Jun'ichi Tsujii
2006 J jnl
Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstracts.
BMC Bioinform.
Hong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, Jun'ichi Tsujii
2006 Misc conf
Extraction of Gene-Disease Relations from Medline Using Domain Dictionaries and Machine Learning.
Pacific Symposium on Biocomputing
Hong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, Jun'ichi Tsujii
2006 B conf
Linguistic and Biological Annotations of Biological Interaction Events.
LREC
Tomoko Ohta, Yuka Tateisi, Jin-Dong Kim, Akane Yakushiji, Jun'ichi Tsujii
2005 — conf
Developing a Robust Part-of-Speech Tagger for Biomedical Text.
Panhellenic Conference on Informatics
Yoshimasa Tsuruoka, Yuka Tateishi, Jin-Dong Kim, Tomoko Ohta, John McNaught, Sophia Ananiadou, Jun'ichi Tsujii
2005 J jnl
Topic Document Model Approach for Naive Bayes Text Classification.
IEICE Trans. Inf. Syst.
Sang-Bum Kim, Hae-Chang Rim, Jin-Dong Kim
2004 — conf
Introduction to the Bio-entity Recognition Task at JNLPBA.
NLPBA/BioNLP
Nigel Collier, Jin-Dong Kim
2004 B conf
Word Folding: Taking the Snapshot of Words Instead of the Whole.
IJCNLP
Jin-Dong Kim, Jun'ichi Tsujii
2003 — conf
Encoding Biomedical Resources in TEI: The Case of the GENIA Corpus.
BioNLP@ACL
Tomaz Erjavec, Jin-Dong Kim, Tomoko Ohta, Yuka Tateisi, Jun'ichi Tsujii
2003 — conf
GENIA corpus - a semantically annotated corpus for bio-textmining.
ISMB (Supplement of Bioinformatics)
Jin-Dong Kim, Tomoko Ohta, Yuka Tateisi, Jun'ichi Tsujii
2003 A* conf
Self-Organizing Markov Models and Their Application to Part-of-Speech Tagging.
ACL
Jin-Dong Kim, Hae-Chang Rim, Jun'ichi Tsujii
2003 — conf
Stretching TEI: Converting the Genia Corpus.
LINC@EACL
Tomaz Erjavec, Jin-Dong Kim, Tomoko Ohta, Yuka Tateisi, Jun'ichi Tsujii
2000 B conf
KCAT: A Korean Corpus Annotating Tool Minimizing Human Intervention.
COLING
Won-Ho Ryu, Jin-Dong Kim, Hae-Chang Rim, Heui-Seok Lim
1999 J jnl
HMM Specialization with Selective Lexicalization
CoRR
Jin-Dong Kim, Sang-Zoo Lee, Hae-Chang Rim
1999 A* conf
HMM Specialization with Selective Lexicalization.
EMNLP
Jin-Dong Kim, Sang-Zoo Lee, Hae-Chang Rim