Jimin Pei

19 papers Journal 19
YearRankTypeTitle / Venue / Authors
2025 J jnl
Using evolutionary context to classify difficult protein folds.
PLoS Comput. Biol.
Jimin Pei, R. Dustin Schaeffer, Qian Cong, Nick V. Grishin
2023 J jnl
AFTM: a database of transmembrane regions in the human proteome predicted by AlphaFold.
Database J. Biol. Databases Curation
Jimin Pei, Qian Cong
2022 J jnl
DisEnrich: database of enriched regions in human dark proteome.
Bioinform.
Kirill E. Medvedev, Jimin Pei, Nick V. Grishin
2022 J jnl
Human mitochondrial protein complexes revealed by large-scale coevolution analysis and deep learning-based structure modeling.
Bioinform.
Jimin Pei, Jing Zhang, Qian Cong
2020 J jnl
Mutation severity spectrum of rare alleles in the human genome is predictive of disease type.
PLoS Comput. Biol.
Jimin Pei, Lisa N. Kinch, Zbyszek Otwinowski, Nick V. Grishin
2020 J jnl
pCRM1exportome: database of predicted CRM1-dependent Nuclear Export Signal (NES) motifs in cancer-related genes.
Bioinform.
Yoonji Lee, Jordan M. Baumhardt, Jimin Pei, Yuh Min Chook, Nick V. Grishin
2018 J jnl
A sequence family database built on ECOD structural domains.
Bioinform.
Yuxing Liao, R. Dustin Schaeffer, Jimin Pei, Nick V. Grishin
2015 J jnl
LocNES: a computational tool for locating classical NESs in CRM1 cargo proteins.
Bioinform.
Darui Xu, Kara Marquis, Jimin Pei, Szu-Chin Fu, Tolga Cagatay, Nick V. Grishin, Yuh Min Chook
2015 J jnl
SFESA: a web server for pairwise alignment refinement by secondary structure shifts.
BMC Bioinform.
Jing Tong, Jimin Pei, Nick V. Grishin
2014 J jnl
ECOD: An Evolutionary Classification of Protein Domains.
PLoS Comput. Biol.
Hua Cheng, R. Dustin Schaeffer, Yuxing Liao, Lisa N. Kinch, Jimin Pei, Shuoyong Shi, Bong-Hyun Kim, Nick V. Grishin
2013 J jnl
Defining and predicting structurally conserved regions in protein superfamilies.
Bioinform.
Ivan K. Huang, Jimin Pei, Nick V. Grishin
2011 J jnl
An automatic method for CASP9 free modeling structure prediction assessment.
Bioinform.
Qian Cong, Lisa N. Kinch, Jimin Pei, Shuoyong Shi, Vyacheslav N. Grishin, Wenlin Li, Nick V. Grishin
2009 J jnl
Analysis of CASP8 targets, predictions and assessment methods.
Database J. Biol. Databases Curation
Shuoyong Shi, Jimin Pei, Ruslan Sadreyev, Lisa N. Kinch, Indraneel Majumdar, Jing Tong, Hua Cheng, Bong-Hyun Kim, Nick V. Grishin
2008 J jnl
PROMALS3D web server for accurate multiple protein sequence and structure alignments.
Nucleic Acids Res.
Jimin Pei, Ming Tang, Nick V. Grishin
2007 J jnl
PROMALS web server for accurate multiple protein sequence alignments.
Nucleic Acids Res.
Jimin Pei, Bong-Hyun Kim, Ming Tang, Nick V. Grishin
2007 J jnl
PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
Bioinform.
Jimin Pei, Nick V. Grishin
2006 J jnl
Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
Bioinform.
Jimin Pei, Wei Cai, Lisa N. Kinch, Nick V. Grishin
2003 J jnl
PCMA: fast and accurate multiple sequence alignment based on profile consistency.
Bioinform.
Jimin Pei, Ruslan Sadreyev, Nick V. Grishin
2001 J jnl
AL2CO: calculation of positional conservation in a protein sequence alignment.
Bioinform.
Jimin Pei, Nick V. Grishin