Jill P. Mesirov

41 papers A 4B 5Misc 1Journal 29Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
igv-reports: embedding interactive genomic visualizations in HTML reports to aid variant review.
Bioinform.
James T. Robinson, Helga Thorvaldsdóttir, Jill P. Mesirov
2024 J jnl
Genome-wide analysis and visualization of copy number with CNVpytor in igv.js.
Bioinform.
Arijit Panda, Milovan Suvakov, Helga Thorvaldsdóttir, Jill P. Mesirov, James T. Robinson, Alexej Abyzov
2023 J jnl
igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV).
Bioinform.
James T. Robinson, Helga Thorvaldsdóttir, Douglass Turner, Jill P. Mesirov
2019 Misc conf
Session introduction.
PSB
Steven E. Brenner, Martha L. Bulyk, Dana C. Crawford, Jill P. Mesirov, Alexander A. Morgan, Predrag Radivojac
2018 J jnl
An accessible, interactive GenePattern Notebook for analysis and exploration of single-cell transcriptomic data.
F1000Research
Clarence K. Mah, Thorin Tabor, Jill P. Mesirov
2017 J jnl
A multi-tool recipe to identify regions of protein-DNA binding and their influence on associated gene expression.
F1000Research
Daniel E. Carlin, Kassi Kosnicki, Sara Garamszegi, Trey Ideker, Helga Thorvaldsdóttir, Michael Reich, Jill P. Mesirov
2015 J jnl
Constellation Map: Downstream visualization and interpretation of gene set enrichment results.
F1000Research
Yan Tan, Felix Wu, Pablo Tamayo, W. Nicholas Haining, Jill P. Mesirov
2015 J jnl
Quantitative visualization of alternative exon expression from RNA-seq data.
Bioinform.
Yarden Katz, Eric T. Wang, Jacob Silterra, Schraga Schwartz, Bang Wong, Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov, Edoardo M. Airoldi, Christopher B. Burge
2014 J jnl
Cytoscape: the network visualization tool for GenomeSpace workflows.
F1000Research
Barry Demchak, Tim Hull, Michael Reich, Ted Liefeld, Michael E. Smoot, Trey Ideker, Jill P. Mesirov
2013 J jnl
GenePattern Flow Cytometry Suite.
Source Code Biol. Medicine
Josef Spidlen, Aaron Barsky, Karin Breuer, Peter Carr, Marc-Danie Nazaire, Barbara A. Hill, Yu Qian, Ted Liefeld, Michael Reich, Jill P. Mesirov, Peter Wilkinson, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman
2013 J jnl
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration.
Briefings Bioinform.
Helga Thorvaldsdóttir, James T. Robinson, Jill P. Mesirov
2012 J jnl
AraPath: a knowledgebase for pathway analysis in Arabidopsis.
Bioinform.
Liming Lai, Arthur Liberzon, Jason Hennessey, Gaixin Jiang, Jianli Qi, Jill P. Mesirov, Steven X. Ge
2012 J jnl
Compression of structured high-throughput sequencing data
CoRR
Fabien Campagne, Kevin C. Dorff, Nyasha Chambwe, James T. Robinson, Jill P. Mesirov, Thomas D. Wu
2011 J jnl
Molecular signatures database (MSigDB) 3.0.
Bioinform.
Arthur Liberzon, Aravind Subramanian, Reid Pinchback, Helga Thorvaldsdóttir, Pablo Tamayo, Jill P. Mesirov
2010 B conf
Automated High-Dimensional Flow Cytometric Data Analysis.
RECOMB
Saumyadipta Pyne, Xinli Hu, Kui Wang, Elizabeth Rossin, Tsung-I Lin, Lisa Maier, Clare Baecher-Allan, Geoffrey J. McLachlan, Pablo Tamayo, David Hafler, Philip L. De Jager, Jill P. Mesirov
2008 J jnl
ISMB 2008 Toronto.
PLoS Comput. Biol.
Michal Linial, Jill P. Mesirov, B. J. Morrison McKay, Burkhard Rost
2007 J jnl
Portraits of breast cancer progression.
BMC Bioinform.
Gul S. Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P. Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot
2006 J jnl
Combo: a whole genome comparative browser.
Bioinform.
Reinhard Engels, Tamara Yu, Christopher B. Burge, Jill P. Mesirov, David DeCaprio, James E. Galagan
2006 J jnl
Comparative gene marker selection suite.
Bioinform.
Joshua Gould, Gad Getz, Stefano Monti, Michael Reich, Jill P. Mesirov
2005 J jnl
GeneCruiser: a web service for the annotation of microarray data.
Bioinform.
Ted Liefeld, Michael Reich, Joshua Gould, Peili Zhang, Pablo Tamayo, Jill P. Mesirov
2005 J jnl
Improving genome annotations using phylogenetic profile anomaly detection.
Bioinform.
Tarjei S. Mikkelsen, James E. Galagan, Jill P. Mesirov
2005 B ed.
Research in Computational Molecular Biology, 9th Annual International Conference, RECOMB 2005, Cambridge, MA, USA, May 14-18, 2005, Proceedings
RECOMB
Satoru Miyano, Jill P. Mesirov, Simon Kasif, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman
2004 J jnl
GeneCluster 2.0: an advanced toolset for bioarray analysis.
Bioinform.
Michael Reich, K. Ohm, Michael Angelo, Pablo Tamayo, Jill P. Mesirov
2003 J jnl
An Analytical Method for Multiclass Molecular Cancer Classification.
SIAM Rev.
Ryan M. Rifkin, Sayan Mukherjee, Pablo Tamayo, Sridhar Ramaswamy, Chen-Hsiang Yeang, Michael Angelo, Michael Reich, Tomaso A. Poggio, Eric S. Lander, Todd R. Golub, Jill P. Mesirov
2003 J jnl
Consensus Clustering: A Resampling-Based Method for Class Discovery and Visualization of Gene Expression Microarray Data.
Mach. Learn.
Stefano Monti, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub
2003 J jnl
Estimating Dataset Size Requirements for Classifying DNA Microarray Data.
J. Comput. Biol.
Sayan Mukherjee, Pablo Tamayo, Simon Rogers, Ryan M. Rifkin, Anna Engle, Colin Campbell, Todd R. Golub, Jill P. Mesirov
2001 — conf
Molecular classification of multiple tumor types.
ISMB (Supplement of Bioinformatics)
Chen-Hsiang Yeang, Sridhar Ramaswamy, Pablo Tamayo, Sayan Mukherjee, Ryan M. Rifkin, Michael Angelo, Michael Reich, Eric S. Lander, Jill P. Mesirov, Todd R. Golub
2000 B conf
Class prediction and discovery using gene expression data.
RECOMB
Donna K. Slonim, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub, Eric S. Lander
2000 B conf
Human and mouse gene structure: comparative analysis and application to exon prediction.
RECOMB
Serafim Batzoglou, Lior Pachter, Jill P. Mesirov, Bonnie Berger, Eric S. Lander
2000 B conf
Sequencing a genome by walking with clone-end sequences: a mathematical analysis (abstract).
RECOMB
Serafim Batzoglou, Bonnie Berger, Jill P. Mesirov, Eric S. Lander
1999 J jnl
Computational biology.
Comput. Sci. Eng.
Jill P. Mesirov, Donna K. Slonim
1995 J jnl
Data Parallel Quadratic Programming on Box-Constrained Problems.
SIAM J. Optim.
Mike McKenna, Jill P. Mesirov, Stavros A. Zenios
1994 J jnl
Erratum: Hypercube Algorithms for Direct N-Body Solvers for Different Granularities.
SIAM J. Sci. Comput.
Jean-Philippe Brunet, Alan Edelman, Jill P. Mesirov
1993 J jnl
Hypercube Algorithms for Direct N-Body Solvers for Different Granularities.
SIAM J. Sci. Comput.
Jean-Philippe Brunet, Jill P. Mesirov, Alan Edelman
1991 A conf
Computing turbulent flow in complex geometries on a massively parallel processor.
SC
James A. Sethian, Jean-Philippe Brunet, Adam Greenberg, Jill P. Mesirov
1991 A conf
Parallel approaches to short range molecular dynamics simulations.
SC
Pablo Tamayo, Jill P. Mesirov, Bruce M. Boghosian
1990 A conf
An optional hypercube direct
SC
Jean-Philippe Brunet, Alan Edelman, Jill P. Mesirov
1990 J jnl
The backpropagation algorithm on grid and hypercube architectures.
Parallel Comput.
Xiru Zhang, Michael McKenna, Jill P. Mesirov, David L. Waltz
1989 — conf
An Efficient Implementation of the Back-propagation Algorithm on the Connection Machine CM-2.
NIPS
Xiru Zhang, Michael McKenna, Jill P. Mesirov, David L. Waltz
1989 A conf
Protein structure prediction by a data-level parallel algorithm.
SC
Xiru Zhang, David L. Waltz, Jill P. Mesirov
1989 J jnl
Study of protein sequence comparison metrics on the connection machine CM-2.
J. Supercomput.
Eric S. Lander, Jill P. Mesirov, Washington Taylor