Jill L. Wegrzyn

15 papers Journal 14
YearRankTypeTitle / Venue / Authors
2021 J jnl
Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases.
Briefings Bioinform.
Margaret Staton, Ethalinda Cannon, Lacey-Anne Sanderson, Jill L. Wegrzyn, Tavis K. Anderson, Sean Buehler, Irene Cobo-Simón, Kay Faaberg, Emily S. Grau, Valentin Guignon, Jessica Gunoskey, Blake Inderski, Sook Jung, Kelly Lager, Dorrie Main, Monica Poelchau, Risharde Ramnath, Peter Richter, Joe West, Stephen P. Ficklin
2020 J jnl
Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases.
Database J. Biol. Databases Curation
Shawna Spoor, Connor Wytko, Brian Soto, Ming Chen, Abdullah Almsaeed, Bradford Condon, Nic Herndon, Heidi Hough, Sook Jung, Meg Staton, Jill L. Wegrzyn, Dorrie Main, F. Alex Feltus, Stephen P. Ficklin
2019 J jnl
15 years of GDR: New data and functionality in the Genome Database for Rosaceae.
Nucleic Acids Res.
Sook Jung, Taein Lee, Chun-Huai Cheng, Katheryn Buble, Ping Zheng, Jing Yu, Jodi L. Humann, Stephen P. Ficklin, Ksenija Gasic, Kristin Scott, Morgan Frank, Sushan Ru, Heidi Hough, Kate Evans, Cameron Peace, Mercy A. Olmstead, Lisa W. DeVetter, James McFerson, Michael Coe, Jill L. Wegrzyn, Margaret E. Staton, Albert G. Abbott, Dorrie Main
2019 J jnl
Growing and cultivating the forest genomics database, TreeGenes.
Database J. Biol. Databases Curation
Taylor Falk, Nic Herndon, Emily S. Grau, Sean Buehler, Peter Richter, Sumaira Zaman, Eliza M. Baker, Risharde Ramnath, Stephen P. Ficklin, Margaret Staton, Frank Alex Feltus, Sook Jung, Doreen Main, Jill L. Wegrzyn
2019 J jnl
Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps.
Database J. Biol. Databases Curation
Katheryn Buble, Sook Jung, Jodi L. Humann, Jing Yu, Chun-Huai Cheng, Taein Lee, Stephen P. Ficklin, Heidi Hough, Bradford Condon, Margaret E. Staton, Jill L. Wegrzyn, Dorrie Main
2019 J jnl
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.
Database J. Biol. Databases Curation
Shawna Spoor, Chun-Huai Cheng, Lacey-Anne Sanderson, Bradford Condon, Abdullah Almsaeed, Ming Chen, Anthony Bretaudeau, Helena Rasche, Sook Jung, Dorrie Main, Kirstin E. Bett, Margaret Staton, Jill L. Wegrzyn, F. Alex Feltus, Stephen P. Ficklin
2019 J jnl
gFACs: Gene Filtering, Analysis, and Conversion to Unify Genome Annotations Across Alignment and Gene Prediction Frameworks.
Genom. Proteom. Bioinform.
Madison Caballero, Jill L. Wegrzyn
2018 J jnl
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.
Database J. Biol. Databases Curation
Lisa C. Harper, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton L. Birkett, Steven B. Cannon, James D. Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew D. Farmer, Stephen P. Ficklin, David M. Grant, Emily S. Grau, Nic Herndon, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard R. Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main
2018 — ch.
Association Mapping for Forest Trees with CartograTree.
Application of Semantic Technology in Biodiversity Science
Nic Herndon, Taylor Falk, Emily S. Grau, Sook Jung, Stephen P. Ficklin, Dorrie Main, Margaret E. Staton, Jill L. Wegrzyn
2018 J jnl
Growing and cultivating the forest genomics database, TreeGenes.
Database J. Biol. Databases Curation
Taylor Falk, Nic Herndon, Emily S. Grau, Sean Buehler, Peter Richter, Sumaira Zaman, Eliza M. Baker, Risharde Ramnath, Stephen P. Ficklin, Margaret Staton, Frank Alex Feltus, Sook Jung, Doreen Main, Jill L. Wegrzyn
2017 J jnl
New extension software modules to enhance searching and display of transcriptome data in Tripal databases.
Database J. Biol. Databases Curation
Ming Chen, Nathan Henry, Abdullah Almsaeed, Xiao Zhou, Jill L. Wegrzyn, Stephen P. Ficklin, Margaret Staton
2016 J jnl
CartograTree: Enabling landscape genomics for forest trees.
PeerJ Prepr.
Nic Herndon, Emily S. Grau, Iman Batra, Steven A. Demurjian, Hans A. Vasquez-Gross, Margaret E. Staton, Jill L. Wegrzyn
2015 J jnl
YeATS - a tool suite for analyzing RNA-seq derived transcriptome identifies a highly transcribed putative extensin in heartwood/sapwood transition zone in black walnut.
F1000Research
Sandeep Chakraborty, Monica Britton, Jill L. Wegrzyn, Timothy Butterfield, Basuthkar J. Rao, Charles A. Leslie, Mallikarjuna Aradhaya, David B. Neale, Keith Woeste, Abhay Dandekar
2009 J jnl
PineSAP - sequence alignment and SNP identification pipeline.
Bioinform.
Jill L. Wegrzyn, Jennifer M. Lee, John Liechty, David B. Neale
2008 J jnl
Bioinformatic analyses of mammalian 5'-UTR sequence properties of mRNAs predicts alternative translation initiation sites.
BMC Bioinform.
Jill L. Wegrzyn, Thomas M. Drudge, Faramarz Valafar, Vivian Hook