Jijun Tang - RankMe

178 papers A* 2A 1B 3C 14Misc 5Journal 104Unranked 47

Year	Rank	Type	Title / Venue / Authors
2026	A*	`conf`	Closer to Biological Mechanism: Drug-Drug Interaction Prediction from the Perspective of Pharmacophore. AAAI Mingliang Dou, Linfeng Wen, Jinyang Xie, Jijun Tang, Shiqiang Ma, Fei Guo
2026	J	`jnl`	MultiPert: An adversarial alignment and dual attention framework for single-cell multi-omics perturbation prediction. PLoS Comput. Biol. Mengyuan Zhao, Xinyue Tang, Jiawei Li, Cheng Liang, Jijun Tang, Fei Guo
2026	J	`jnl`	Refprogen: a reference-guided molecular generation model with protein-ligand joint representation for property-aware drug design. Expert Syst. Appl. Xiaoyi Liu, Na Zhang, Chengwei Ai, Jijun Tang, Fei Guo
2025	—	`conf`	DCT-Net: Dual-Branch CT Reconstruction from Orthogonal X-Rays with Diffusion Model and Contrastive Learning. MICCAI (3) Zhiyu Zhang, Cong Shen, Jijun Tang, Zhijun Liao
2025	J	`jnl`	HyperPhS: a pharmacophore-guided multimodal representation framework for metabolic stability prediction through contrastive hypergraph learning. Bioinform. Xiaoyi Liu, Na Zhang, Chenglong Kang, Chengwei Ai, Hongpeng Yang, Jijun Tang, Fei Guo
2025	—	`conf`	MF-DocDDI: Drug Entity Multi-Feature Fusion for Document-Level Drug-Drug Interaction Relation Extraction. BIBM Han Han, Mingliang Dou, Jijun Tang, Fei Guo
2025	J	`jnl`	Multi-granularity semantic relational mapping for image caption. Expert Syst. Appl. Nan Gao, Renyuan Yao, Peng Chen, Ronghua Liang, Guodao Sun, Jijun Tang
2025	J	`jnl`	RFAE: A high-robust feature selector based on fractal autoencoder. Expert Syst. Appl. Jingfeng Ou, Jiawei Li, Zhiliang Xia, Shurui Dai, Yan Guo, Limin Jiang, Jijun Tang
2024	J	`jnl`	A generalizable framework for unlocking missing reactions in genome-scale metabolic networks using deep learning. CoRR Xiaoyi Liu, Hongpeng Yang, Chengwei Ai, Ruihan Dong, Yijie Ding, Qianqian Yuan, Jijun Tang, Fei Guo
2024	—	`conf`	ACPNet: Enhancing Small-Scale Dieases Detection in Panoramic X-rays. BIBM Nan Gao, Junchao Zhu, Peng Chen, Jijun Tang, Feng Jiang, Ronghua Liang
2024	J	`jnl`	Aggregate-aware model with bidirectional edge generation for medical image segmentation. Appl. Soft Comput. Shiqiang Ma, Xuejian Li, Jijun Tang, Fei Guo
2024	—	`conf`	CUK-Band: A CUDA-Based Multiple Genomic Sequence Alignment on GPU. ICIC (LNBI 2) Xianghua Kong, Cong Shen, Jijun Tang
2024	J	`jnl`	Comprehensive cross cancer analyses reveal mutational signature cancer specificity. Quant. Biol. Rui Xin, Limin Jiang, Hui Yu, Fengyao Yan, Jijun Tang, Yan Guo
2024	J	`jnl`	DMAMP: A Deep-Learning Model for Detecting Antimicrobial Peptides and Their Multi-Activities. IEEE ACM Trans. Comput. Biol. Bioinform. Qiaozhen Meng, Genlang Chen, Bin Lin, Shixin Zheng, Yulai Lin, Jijun Tang, Fei Guo
2024	J	`jnl`	Drug-Drug Interaction Relation Extraction Based on Deep Learning: A Review. ACM Comput. Surv. Mingliang Dou, Jijun Tang, Prayag Tiwari, Yijie Ding, Fei Guo
2024	—	`conf`	Dual-Channel Reliable Breast Ultrasound Image Classification Based on Explainable Attribution and Uncertainty Quantification. IPMV Haonan Hu, Shuge Lei, Desheng Sun, Huabin Zhang, Kehong Yuan, Jian Dai, Jijun Tang, Yan Tong, Qiongyu Ye
2024	J	`jnl`	Dual-Channel Reliable Breast Ultrasound Image Classification Based on Explainable Attribution and Uncertainty Quantification. CoRR Shuge Lei, Haonan Hu, Dasheng Sun, Huabin Zhang, Kehong Yuan, Jian Dai, Jijun Tang, Yan Tong
2024	J	`jnl`	EPIMR: Prediction of Enhancer-Promoter Interactions by Multi-Scale ResNet on Image Representation. Big Data Min. Anal. Qiaozhen Meng, Yinuo Lyu, Xiaoqing Peng, Junhai Xu, Jijun Tang, Fei Guo
2024	J	`jnl`	GFDet: Multi-Level Feature Fusion Network for Caries Detection Using Dental Endoscope Images. Big Data Min. Anal. Nan Gao, Yukai Li, Peng Chen, Jijun Tang, Tianshuang Liu
2024	—	`conf`	Multi-Task Driven Multi-Level Dynamical Fusion for Single-Cell Multi-Omics Cell Type Annotation. BIBM Jiawei Li, Shizhan Chen, Zongbo Han, Wei Li, Jijun Tang, Fei Guo
2024	J	`jnl`	PPRTGI: A Personalized PageRank Graph Neural Network for TF-Target Gene Interaction Detection. IEEE ACM Trans. Comput. Biol. Bioinform. Ke Ma, Jiawei Li, Mengyuan Zhao, Ibrahim Zamit, Bin Lin, Fei Guo, Jijun Tang
2024	J	`jnl`	Prediction of LncRNA-Protein Interactions Based on Kernel Combinations and Graph Convolutional Networks. IEEE J. Biomed. Health Informatics Cong Shen, Dongdong Mao, Jijun Tang, Zhijun Liao, Shengyong Chen
2024	J	`jnl`	RetroCaptioner: beyond attention in end-to-end retrosynthesis transformer via contrastively captioned learnable graph representation. Bioinform. Xiaoyi Liu, Chengwei Ai, Hongpeng Yang, Ruihan Dong, Jijun Tang, Shuangjia Zheng, Fei Guo
2024	—	`conf`	SiamSegNet: A multimodal Segmentation Method Based on Cross-modal Generation for Medical Image Segmentation. DASFAA (3) Shiqiang Ma, Fei Guo, Jijun Tang
2024	J	`jnl`	TranSiam: Aggregating multi-modal visual features with locality for medical image segmentation. Expert Syst. Appl. Xuejian Li, Shiqiang Ma, Junhai Xu, Jijun Tang, Shengfeng He, Fei Guo
2024	—	`conf`	scCADE: A Superior Tool for Predicting Perturbation Responses in Single-Cell Gene Expression Using Contrastive Learning and Attention Mechanisms. BIBM Jingfeng Ou, Jiawei Li, Zhiliang Xia, Shurui Dai, Yulian Ding, Yan Guo, Limin Jiang, Jijun Tang
2023	J	`jnl`	A multi-scale multi-model deep neural network via ensemble strategy on high-throughput microscopy image for protein subcellular localization. Expert Syst. Appl. Jiaqi Ding, Junhai Xu, Jianguo Wei, Jijun Tang, Fei Guo
2023	—	`conf`	BTCN: Bridging the Gap Between Pre-trained and Downstream Models for Endoscopic Caries Detection. BIBM Nan Gao, Peng Chen, Yukai Li, Jijun Tang, Ronghua Liang, Tianshuang Liu
2023	J	`jnl`	Boosting Short Text Classification by Solving the OOV Problem. IEEE ACM Trans. Audio Speech Lang. Process. Nan Gao, Yongjian Wang, Peng Chen, Jijun Tang
2023	J	`jnl`	CoMutDB: the landscape of somatic mutation co-occurrence in cancers. Bioinform. Limin Jiang, Hui Yu, Jijun Tang, Yan Guo
2023	J	`jnl`	ComDock: A novel approach for protein-protein docking with an efficient fusing strategy. Comput. Biol. Medicine Qiaozhen Meng, Fei Guo, Ercheng Wang, Jijun Tang
2023	—	`conf`	DETA-Net: A Dual Encoder Network with Text-Guided Attention Mechanism for Skin-Lesions Segmentation. ICIC (3) Cong Shen, Xinyue Wang, Jijun Tang, Zhijun Liao
2023	J	`jnl`	IK-DDI: a novel framework based on instance position embedding and key external text for DDI extraction. Briefings Bioinform. Mingliang Dou, Jiaqi Ding, Genlang Chen, Junwen Duan, Fei Guo, Jijun Tang
2023	J	`jnl`	Identification of DNA N4-methylcytosine Sites via Multiview Kernel Sparse Representation Model. IEEE Trans. Artif. Intell. Chengwei Ai, Prayag Tiwari, Hongpeng Yang, Yijie Ding, Jijun Tang, Fei Guo
2023	J	`jnl`	Improved structure-related prediction for insufficient homologous proteins using MSA enhancement and pre-trained language model. Briefings Bioinform. Qiaozhen Meng, Fei Guo, Jijun Tang
2023	J	`jnl`	Laplacian Regularized Sparse Representation Based Classifier for Identifying DNA N4-Methylcytosine Sites via $L_{2,1/2}$L2,1/2-Matrix Norm. IEEE ACM Trans. Comput. Biol. Bioinform. Yijie Ding, Wenying He, Jijun Tang, Quan Zou, Fei Guo
2023	J	`jnl`	Low Rank Matrix Factorization Algorithm Based on Multi-Graph Regularization for Detecting Drug-Disease Association. IEEE ACM Trans. Comput. Biol. Bioinform. Chengwei Ai, Hongpeng Yang, Yijie Ding, Jijun Tang, Fei Guo
2023	J	`jnl`	MVML-MPI: Multi-View Multi-Label Learning for Metabolic Pathway Inference. Briefings Bioinform. Xiaoyi Liu, Hongpeng Yang, Chengwei Ai, Yijie Ding, Fei Guo, Jijun Tang
2023	—	`conf`	MixUNet: Mix the 2D and 3D Models for Robust Medical Image Segmentation. BIBM Jiawei Li, Shizhan Chen, Shiqiang Ma, Fei Guo, Jijun Tang
2023	—	`conf`	Prediction of LncRNA-Protein Interactions Based on Multi-kernel Fusion and Graph Auto-Encoders. ICIC (3) Dongdong Mao, Cong Shen, Ruilin Wu, Yuyang Han, Yankai Wu, Jinxuan Wang, Jijun Tang, Zhijun Liao
2022	J	`jnl`	A hybrid deep learning framework for gene regulatory network inference from single-cell transcriptomic data. Briefings Bioinform. Mengyuan Zhao, Wenying He, Jijun Tang, Quan Zou, Fei Guo
2022	J	`jnl`	A multi-layer multi-kernel neural network for determining associations between non-coding RNAs and diseases. Neurocomputing Chengwei Ai, Hongpeng Yang, Yijie Ding, Jijun Tang, Fei Guo
2022	J	`jnl`	BAT-Net: An enhanced RNA Secondary Structure prediction via bidirectional GRU-based network with attention mechanism. Comput. Biol. Chem. Cong Shen, Yu Chen, Feng Xiao, Tian Yang, Xinyue Wang, Shengyong Chen, Jijun Tang, Zhijun Liao
2022	—	`conf`	BP-DDI: Drug-drug interaction prediction based on biological information and pharmacological text. BIBM Mingliang Dou, Han Han, Genlang Chen, Fei Guo, Jijun Tang
2022	J	`jnl`	DeepFusionDTA: Drug-Target Binding Affinity Prediction With Information Fusion and Hybrid Deep-Learning Ensemble Model. IEEE ACM Trans. Comput. Biol. Bioinform. Yuqian Pu, Jiawei Li, Jijun Tang, Fei Guo
2022	J	`jnl`	EAA-Net: Rethinking the Autoencoder Architecture with Intra-class Features for Medical Image Segmentation. CoRR Shiqiang Ma, Xuejian Li, Jijun Tang, Fei Guo
2022	J	`jnl`	Identification of DNA N4-methylcytosine sites via fuzzy model on self representation. Appl. Soft Comput. Leyao Wang, Yijie Ding, Junhai Xu, Wenhuan Lu, Jijun Tang, Fei Guo
2022	J	`jnl`	Identification of drug-target interactions via multiple kernel-based triple collaborative matrix factorization. Briefings Bioinform. Yijie Ding, Jijun Tang, Fei Guo, Quan Zou
2022	J	`jnl`	Identification of protein-nucleotide binding residues via graph regularized k-local hyperplane distance nearest neighbor model. Appl. Intell. Yijie Ding, Chao Yang, Jijun Tang, Fei Guo
2022	J	`jnl`	Identify ncRNA Subcellular Localization via Graph Regularized $k$k-Local Hyperplane Distance Nearest Neighbor Model on Multi-Kernel Learning. IEEE ACM Trans. Comput. Biol. Bioinform. Haohao Zhou, Hao Wang, Jijun Tang, Yijie Ding, Fei Guo
2022	J	`jnl`	Inferring gene regulatory network via fusing gene expression image and RNA-seq data. Bioinform. Xuejian Li, Shiqiang Ma, Jin Liu, Jijun Tang, Fei Guo
2022	J	`jnl`	Inferring human microbe-drug associations via multiple kernel fusion on graph neural network. Knowl. Based Syst. Hongpeng Yang, Yijie Ding, Jijun Tang, Fei Guo
2022	—	`conf`	Integrating Prior Knowledge with Graph Encoder for Gene Regulatory Inference from Single-cell RNA-Seq Data. BIBM Jiawei Li, Fan Yang, Fang Wang, Yu Rong, Peilin Zhao, Shizhan Chen, Jianhua Yao, Jijun Tang, Fei Guo
2022	—	`conf`	Multi-scale Neighborhood Attention Transformer on U-Net for Medical Image Segmentation. BIBM Nanxing Zhang, Shiqiang Ma, Xuejian Li, Jiahui Zhang, Jijun Tang, Fei Guo
2022	J	`jnl`	Res2Unet: A multi-scale channel attention network for retinal vessel segmentation. Neural Comput. Appl. Xuejian Li, Jiaqi Ding, Jijun Tang, Fei Guo
2022	J	`jnl`	TranSiam: Fusing Multimodal Visual Features Using Transformer for Medical Image Segmentation. CoRR Xuejian Li, Shiqiang Ma, Jijun Tang, Fei Guo
2022	J	`jnl`	Two-stage-vote ensemble framework based on integration of mutation data and gene interaction network for uncovering driver genes. Briefings Bioinform. Yingxin Kan, Limin Jiang, Yan Guo, Jijun Tang, Fei Guo
2021	A	`conf`	A Zero-Shot Method for 3D Medical Image Segmentation. ICME Shiqiang Ma, Xuejian Li, Jijun Tang, Fei Guo
2021	J	`jnl`	A comprehensive overview and critical evaluation of gene regulatory network inference technologies. Briefings Bioinform. Mengyuan Zhao, Wenying He, Jijun Tang, Quan Zou, Fei Guo
2021	J	`jnl`	A sequence-based multiple kernel model for identifying DNA-binding proteins. BMC Bioinform. Yuqing Qian, Limin Jiang, Yijie Ding, Jijun Tang, Fei Guo
2021	J	`jnl`	AIEpred: An Ensemble Predictive Model of Classifier Chain to Identify Anti-Inflammatory Peptides. IEEE ACM Trans. Comput. Biol. Bioinform. Jinhao Zhang, Zehua Zhang, Lianrong Pu, Jijun Tang, Fei Guo
2021	J	`jnl`	CrystalM: A Multi-View Fusion Approach for Protein Crystallization Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. Yubo Wang, Yijie Ding, Jijun Tang, Yu Dai, Fei Guo
2021	J	`jnl`	DeepATT: a hybrid category attention neural network for identifying functional effects of DNA sequences. Briefings Bioinform. Jiawei Li, Yuqian Pu, Jijun Tang, Quan Zou, Fei Guo
2021	—	`conf`	Document-level DDI relation extraction with document-entity embedding. BIBM Mingliang Dou, Jijun Tang, Fei Guo
2021	J	`jnl`	Drug-disease associations prediction via Multiple Kernel-based Dual Graph Regularized Least Squares. Appl. Soft Comput. Hongpeng Yang, Yijie Ding, Jijun Tang, Fei Guo
2021	J	`jnl`	Exploring associations of non-coding RNAs in human diseases via three-matrix factorization with hypergraph-regular terms on center kernel alignment. Briefings Bioinform. Hao Wang, Jijun Tang, Yijie Ding, Fei Guo
2021	J	`jnl`	Exploring effectiveness of ab-initio protein-protein docking methods on a novel antibacterial protein complex dataset. Briefings Bioinform. Wei Zhang, Qiaozhen Meng, Jijun Tang, Fei Guo
2021	—	`conf`	GEU-Net: Rethinking the information transmission in the skip connection of U-Net architecture. BIBM Shiqiang Ma, Xuejian Li, Zehua Zhang, Jijun Tang, Fei Guo
2021	J	`jnl`	Granular multiple kernel learning for identifying RNA-binding protein residues via integrating sequence and structure information. Neural Comput. Appl. Chao Yang, Yijie Ding, Qiaozhen Meng, Jijun Tang, Fei Guo
2021	J	`jnl`	IEEE Access Special Section Editorial: Feature Representation and Learning Methods With Applications in Large-Scale Biological Sequence Analysis. IEEE Access Feifei Cui, Quan Zou, Qin Ma, Leyi Wei, Jijun Tang, Dariusz Mrozek
2021	J	`jnl`	Identification of drug-target interactions via multi-view graph regularized link propagation model. Neurocomputing Yijie Ding, Jijun Tang, Fei Guo
2021	—	`conf`	MIASNet: A medical image segmentation method predicting future based on past and current cases. BIBM Shiqiang Ma, Xuejian Li, Jijun Tang, Fei Guo
2021	J	`jnl`	MMFGRN: a multi-source multi-model fusion method for gene regulatory network reconstruction. Briefings Bioinform. Wenying He, Jijun Tang, Quan Zou, Fei Guo
2021	—	`conf`	Membrane Protein Identification via Multi-view Graph Regularized k-Local Hyperplane Distance Nearest Neighbor Model. BIBM Mengwei Sun, Yuqing Qian, Yijie Ding, Jijun Tang, Quan Zou
2021	—	`conf`	Multi-AMP: detecting the antimicrobial peptides and their activities using the multi-task learning. BIBM Qiaozhen Meng, Jijun Tang, Fei Guo
2021	J	`jnl`	Multi-Scale Time-Series Kernel-Based Learning Method for Brain Disease Diagnosis. IEEE J. Biomed. Health Informatics Zehua Zhang, Jiaqi Ding, Junhai Xu, Jijun Tang, Fei Guo
2021	J	`jnl`	Predicting MHC class I binder: existing approaches and a novel recurrent neural network solution. Briefings Bioinform. Limin Jiang, Hui Yu, Jiawei Li, Jijun Tang, Yan Guo, Fei Guo
2021	J	`jnl`	Predicting subcellular location of protein with evolution information and sequence-based deep learning. BMC Bioinform. Zhijun Liao, Gaofeng Pan, Chao Sun, Jijun Tang
2021	J	`jnl`	Protein Crystallization Identification via Fuzzy Model on Linear Neighborhood Representation. IEEE ACM Trans. Comput. Biol. Bioinform. Yijie Ding, Jijun Tang, Fei Guo
2021	—	`conf`	RCGA-Net: An Improved Multi-hybrid Attention Mechanism Network in Biomedical Image Segmentation. BIBM Feng Xiao, Cong Shen, Yu Chen, Tian Yang, Shengyong Chen, Zhijun Liao, Jijun Tang
2020	—	`conf`	A Deep Supervision CNN Network for Brain Tumor Segmentation. BrainLes@MICCAI (2) Shiqiang Ma, Zehua Zhang, Jiaqi Ding, Xuejian Li, Jijun Tang, Fei Guo
2020	J	`jnl`	Achieving large and distant ancestral genome inference by using an improved discrete quantum-behaved particle swarm optimization algorithm. BMC Bioinform. Zhaojuan Zhang, Wanliang Wang, Ruofan Xia, Gaofeng Pan, Jiandong Wang, Jijun Tang
2020	—	`conf`	An two-layer predictive model of ensemble classifier chain for detecting antimicrobial peptides. BIBM Jinhao Zhang, Shuhao Li, Yijie Ding, Jijun Tang, Fei Guo
2020	J	`jnl`	Critical evaluation of web-based prediction tools for human protein subcellular localization. Briefings Bioinform. Yinan Shen, Yijie Ding, Jijun Tang, Quan Zou, Fei Guo
2020	J	`jnl`	DeepAVP: A Dual-Channel Deep Neural Network for Identifying Variable-Length Antiviral Peptides. IEEE J. Biomed. Health Informatics Jiawei Li, Yuqian Pu, Jijun Tang, Quan Zou, Fei Guo
2020	J	`jnl`	Human protein subcellular localization identification via fuzzy model on Kernelized Neighborhood Representation. Appl. Soft Comput. Yijie Ding, Jijun Tang, Fei Guo
2020	J	`jnl`	Identification of Drug-Target Interactions via Dual Laplacian Regularized Least Squares with Multiple Kernel Fusion. Knowl. Based Syst. Yijie Ding, Jijun Tang, Fei Guo
2020	J	`jnl`	Identification of Highest-Affinity Binding Sites of Yeast Transcription Factor Families. J. Chem. Inf. Model. Zongyu Wang, Wenying He, Jijun Tang, Fei Guo
2020	J	`jnl`	Identification of drug-target interactions via fuzzy bipartite local model. Neural Comput. Appl. Yijie Ding, Jijun Tang, Fei Guo
2020	J	`jnl`	Identification of human microRNA-disease association via hypergraph embedded bipartite local model. Comput. Biol. Chem. Yijie Ding, Limin Jiang, Jijun Tang, Fei Guo
2020	J	`jnl`	Identification of membrane protein types via multivariate information fusion with Hilbert-Schmidt Independence Criterion. Neurocomputing Hao Wang, Yijie Ding, Jijun Tang, Fei Guo
2020	—	`conf`	Melanoma Classification in Dermoscopy Images via Ensemble Learning on Deep Neural Network. BIBM Jie Song, Jiawei Li, Shiqiang Ma, Jijun Tang, Fei Guo
2019	—	`conf`	Identification of DNA-Binding Proteins via Fuzzy Multiple Kernel Model and Sequence Information. ICIC (2) Yijie Ding, Jijun Tang, Fei Guo
2019	J	`jnl`	Identification of Drug-Side Effect Association via Semisupervised Model and Multiple Kernel Learning. IEEE J. Biomed. Health Informatics Yijie Ding, Jijun Tang, Fei Guo
2019	J	`jnl`	Identification of drug-side effect association via multiple information integration with centered kernel alignment. Neurocomputing Yijie Ding, Jijun Tang, Fei Guo
2019	J	`jnl`	Identifying protein-protein interface via a novel multi-scale local sequence and structural representation. BMC Bioinform. Fei Guo, Quan Zou, Guang Yang, Dan Wang, Jijun Tang, Junhai Xu
2019	J	`jnl`	LPI-KTASLP: Prediction of LncRNA-Protein Interaction by Semi-Supervised Link Learning With Multivariate Information. IEEE Access Cong Shen, Yijie Ding, Jijun Tang, Limin Jiang, Fei Guo
2019	J	`jnl`	Phylogenetic Reconstruction for Copy-Number Evolution Problems. IEEE ACM Trans. Comput. Biol. Bioinform. Ruofan Xia, Yu Lin, Jun Zhou, Tieming Geng, Bing Feng, Jijun Tang
2019	—	`conf`	The Application of Machine Learning Algorithms to Diagnose CKD Stages and Identify Critical Metabolites Features. IWBBIO (1) Bing Feng, Ying-Yong Zhao, Jiexi Wang, Hui Yu, Shiva Potu, Jiandong Wang, Jijun Tang, Yan Guo
2018	J	`jnl`	A Median Solver and Phylogenetic Inference Based on Double-Cut-and-Join Sorting. J. Comput. Biol. Ruofan Xia, Yu Lin, Jun Zhou, Bing Feng, Jijun Tang
2018	J	`jnl`	A computational approach for examining the roots and spreading patterns of fake news: Evolution tree analysis. Comput. Hum. Behav. S. Mo Jang, Tieming Geng, Jo-Yun Queenie Li, Ruofan Xia, Chin-Tser Huang, Hwalbin Kim, Jijun Tang
2018	J	`jnl`	A flexible approach to reconstruct the genomic spatial structure by the genetic algorithm. Int. J. Comput. Biol. Drug Des. Yan Zhang, William Hoskins, Ruofan Xia, Xiya Xia, Jim W. Zheng, Jijun Tang
2018	J	`jnl`	Detecting complexes from edge-weighted PPI networks via genes expression analysis. BMC Syst. Biol. Zehua Zhang, Jian Song, Jijun Tang, Xinying Xu, Fei Guo
2018	J	`jnl`	Guest Editorial for the 14 IEEE ACM Trans. Comput. Biol. Bioinform. Jijun Tang, Lu Tian, Yi-Ping Phoebe Chen
2018	J	`jnl`	Prediction of human protein subcellular localization using deep learning. J. Parallel Distributed Comput. Leyi Wei, Yijie Ding, Ran Su, Jijun Tang, Quan Zou
2017	—	`conf`	A Median Solver and Phylogenetic Inference Based on DCJ Sorting. ISBRA Ruofan Xia, Jun Zhou, Lingxi Zhou, Bing Feng, Jijun Tang
2017	—	`conf`	Down syndrome prediction/screening model based on deep learning and illumina genotyping array. BIBM Bing Feng, David C. Samuels, William Hoskins, Yan Guo, Yan Zhang, Jijun Tang, Zibo Meng
2017	J	`jnl`	Exemplar or Matching: Modeling DCJ Problems with Unequal Content Genome Data. CoRR Zhaoming Yin, Jijun Tang, Stephen W. Schaeffer, David A. Bader
2017	—	`conf`	HiCComp: Multiple-level comparative analysis of Hi-C data by triplet network. BIBM Yan Zhang, Bo Zhang, W. Jim Zheng, Jijun Tang, Feng Yue
2017	J	`jnl`	Identification of Protein-Ligand Binding Sites by Sequence Information and Ensemble Classifier. J. Chem. Inf. Model. Yijie Ding, Jijun Tang, Fei Guo
2017	J	`jnl`	Identification of drug-target interactions via multiple information integration. Inf. Sci. Yijie Ding, Jijun Tang, Fei Guo
2017	J	`jnl`	Improvement of phylogenetic method to analyze compositional heterogeneity. BMC Syst. Biol. Zehua Zhang, Kecheng Guo, Gaofeng Pan, Jijun Tang, Fei Guo
2017	J	`jnl`	Local-DPP: An improved DNA-binding protein prediction method by exploring local evolutionary information. Inf. Sci. Leyi Wei, Jijun Tang, Quan Zou
2017	J	`jnl`	Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy. CoRR Quan Zou, Shixiang Wan, Ying Ju, Jijun Tang, Xiangxiang Zeng
2016	J	`jnl`	Analysis of gene copy number changes in tumor phylogenetics. Algorithms Mol. Biol. Jun Zhou, Yu Lin, Vaibhav Rajan, William Hoskins, Bing Feng, Jijun Tang
2016	J	`jnl`	Exemplar or matching: modeling DCJ problems with unequal content genome data. J. Comb. Optim. Zhaoming Yin, Jijun Tang, Stephen W. Schaeffer, David A. Bader
2016	J	`jnl`	Guest Editorial for the 14th Asia Pacific Bioinformatics Conference (APBC2016). Comput. Biol. Chem. Jijun Tang, Lu Tian, Yi-Ping Phoebe Chen
2016	J	`jnl`	Learning from real imbalanced data of 14-3-3 proteins binding specificity. Neurocomputing Zhao Li, Jijun Tang, Fei Guo
2016	J	`jnl`	Predicting protein-protein interactions via multivariate mutual information of protein sequences. BMC Bioinform. Yijie Ding, Jijun Tang, Fei Guo
2016	J	`jnl`	Pretata: predicting TATA binding proteins with novel features and dimensionality reduction strategy. BMC Syst. Biol. Quan Zou, Shixiang Wan, Ying Ju, Jijun Tang, Xiangxiang Zeng
2015	J	`jnl`	A Cooperative Co-Evolutionary Genetic Algorithm for Tree Scoring and Ancestral Genome Inference. IEEE ACM Trans. Comput. Biol. Bioinform. Nan Gao, Yan Zhang, Bing Feng, Jijun Tang
2015	—	`conf`	An Iterative Approach for Phylogenetic Analysis of Tumor Progression Using FISH Copy Number. ISBRA Jun Zhou, Yu Lin, William Hoskins, Jijun Tang
2015	—	`conf`	Ancestral reconstruction under weighted maximum matching. BIBM Lingxi Zhou, William Hoskins, Jieyi Zhao, Jijun Tang
2015	J	`jnl`	Identification of Protein-Protein Interactions by Detecting Correlated Mutation at the Interface. J. Chem. Inf. Model. Fei Guo, Yijie Ding, Zhao Li, Jijun Tang
2015	C	`conf`	Maximum Parsimony Analysis of Gene Copy Number Changes. WABI Jun Zhou, Yu Lin, Vaibhav Rajan, William Hoskins, Jijun Tang
2014	Misc	`conf`	A Lin-Kernighan Heuristic for the DCJ Median Problem of Genomes with Unequal Contents. COCOON Zhaoming Yin, Jijun Tang, Stephen W. Schaeffer, David A. Bader
2014	—	`conf`	Assessing ancestral genome reconstruction methods by resampling. BIBM Jun Zhou, Fei Hu, William Hoskins, Jijun Tang
2014	—	`conf`	GSO: A Semantic Web Ontology to Capture 3D Genome Structure. SWAT4LS W. Jim Zheng, Jingcheng Du, Jijun Tang, Cui Tao
2014	J	`jnl`	MLGO: phylogeny reconstruction and ancestral inference from gene-order data. BMC Bioinform. Fei Hu, Yu Lin, Jijun Tang
2014	J	`jnl`	Probabilistic Reconstruction of Ancestral Gene Orders with Insertions and Deletions. IEEE ACM Trans. Comput. Biol. Bioinform. Fei Hu, Jun Zhou, Lingxi Zhou, Jijun Tang
2013	—	`conf`	Exploring genomes with a game engine. BIBM Jeremiah J. Shepherd, Lingxi Zhou, Yan Zhang, W. Jim Zheng, Jijun Tang
2013	C	`conf`	Exploring genomes with a game engine. FDG Jeremiah J. Shepherd, Bill Arndt, W. Jim Zheng, Yun Zhu, Jijun Tang
2013	Misc	`conf`	Maximum Likelihood Phylogenetic Reconstruction from High-Resolution Whole-Genome Data and a Tree of 68 Eukaryotes. Pacific Symposium on Biocomputing Yu Lin, Fei Hu, Jijun Tang, Bernard M. E. Moret
2013	—	`ch.`	Rearrangements in Phylogenetic Inference: Compare, Model, or Encode? Models and Algorithms for Genome Evolution Bernard M. E. Moret, Yu Lin, Jijun Tang
2013	—	`conf`	Reconstructing Ancestral Genomic Orders Using Binary Encoding and Probabilistic Models. ISBRA Fei Hu, Lingxi Zhou, Jijun Tang
2013	Misc	`conf`	Streaming Breakpoint Graph Analytics for Accelerating and Parallelizing the Computation of DCJ Median of Three Genomes. ICCS Zhaoming Yin, Jijun Tang, Stephen W. Schaeffer, David A. Bader
2012	J	`jnl`	A mixture framework for inferring ancestral gene orders. BMC Genom. Yiwei Zhang, Fei Hu, Jijun Tang
2012	C	`ed.`	Algorithms in Bioinformatics - 12th International Workshop, WABI 2012, Ljubljana, Slovenia, September 10-12, 2012. Proceedings WABI Benjamin J. Raphael, Jijun Tang
2012	J	`jnl`	Label-Guided Graph Exploration with Adjustable Ratio of Labels CoRR Meng Zhang, Yi Zhang, Jijun Tang
2012	J	`jnl`	Label-Guided Graph Exploration with Adjustable Ratio of Labels. Int. J. Found. Comput. Sci. Liang Hu, Meng Zhang, Yi Zhang, Jijun Tang
2011	C	`conf`	A different approach to teaching Chinese through serious games. FDG Jeremiah J. Shepherd, Renaldo J. Doe, Matthew Arnold, Yun Zhu, Jijun Tang
2011	—	`conf`	Emulating Insertion and Deletion Events in Genome Rearrangement Analysis. BIBM William Arndt, Jijun Tang
2011	—	`conf`	Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome. BIBM Workshops William Arndt, Thomas M. Asbury, W. Jim Zheng, Matt Mitman, Jijun Tang
2011	C	`conf`	Isolating - a new resampling method for gene order data. CIBCB Jian Shi, William Arndt, Fei Hu, Jijun Tang
2011	—	`conf`	Lost in the Middle Kingdom: a second language acquisition video game. ACM Southeast Regional Conference Jeremiah J. Shepherd, Renaldo J. Doe, Matthew Arnold, Nancy Cheek, Yun Zhu, Jijun Tang
2011	C	`conf`	Maximum likelihood phylogenetic reconstruction using gene order encodings. CIBCB Fei Hu, Nan Gao, Meng Zhang, Jijun Tang
2011	J	`jnl`	Multi-pattern Matching with Wildcards. J. Softw. Meng Zhang, Yi Zhang, Jijun Tang, Xiaolong Bai
2010	J	`jnl`	Genome3D: A viewer-model framework for integrating and visualizing multi-scale epigenomic information within a three-dimensional genome. BMC Bioinform. Thomas M. Asbury, Matt Mitman, Jijun Tang, W. Jim Zheng
2010	—	`conf`	Matching a Set of Patterns with Wildcards. PAAP Meng Zhang, Yi Zhang, Jijun Tang
2010	—	`conf`	Phylogenetic reconstruction with gene rearrangements and gene losses. BIBM Yiwei Zhang, Fei Hu, Jijun Tang
2010	J	`jnl`	Using jackknife to assess the quality of gene order phylogenies. BMC Bioinform. Jian Shi, Yiwei Zhang, Haiwei Luo, Jijun Tang
2009	J	`jnl`	A space-efficient algorithm for three sequence alignment and ancestor inference. Int. J. Data Min. Bioinform. Feng Yue, Jijun Tang
2009	Misc	`conf`	An Exact Solver for the DCJ Median Problem. Pacific Symposium on Biocomputing Meng Zhang, William Arndt, Jijun Tang
2009	J	`jnl`	Maximum independent sets of commuting and noninterfering inversions. BMC Bioinform. Krister M. Swenson, Yokuki To, Jijun Tang, Bernard M. E. Moret
2009	J	`jnl`	Simultaneous phylogeny reconstruction and multiple sequence alignment. BMC Bioinform. Feng Yue, Jian Shi, Jijun Tang
2008	C	`conf`	A Branch-and-Bound Method for the Multichromosomal Reversal Median Problem. WABI Meng Zhang, William Arndt, Jijun Tang
2008	—	`conf`	A New Approach for Tree Alignment Based on Local Re-Optimization. BMEI (1) Feng Yue, Jijun Tang
2008	J	`jnl`	Improving Reversal Median Computation Using Commuting Reversals and Cycle Information. J. Comput. Biol. William Arndt, Jijun Tang
2008	B	`conf`	Phylogenetic Reconstruction from Complete Gene Orders of Whole Genomes. APBC Krister M. Swenson, William Arndt, Jijun Tang, Bernard M. E. Moret
2008	C	`conf`	Phylogenetic reconstruction with disk-covering and Bayesian approaches. BIBE Yan Guo, Fei Ye, Jijun Tang
2007	—	`conf`	A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference. BIBM Feng Yue, Jijun Tang
2007	A*	`conf`	A Fast 3D Correspondence Method for Statistical Shape Modeling. CVPR Pahal Dalal, Brent C. Munsell, Song Wang, Jijun Tang, Kenton Oliver, Hiroaki Ninomiya, Xiangrong Zhou, Hiroshi Fujita
2007	C	`conf`	A Heuristic for Phylogenetic Reconstruction Using Transposition. BIBE Feng Yue, Meng Zhang, Jijun Tang
2007	C	`conf`	FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data. BIBE Jason D. Bakos, Panormitis E. Elenis, Jijun Tang
2007	—	`conf`	Improving Inversion Median Computation Using Commuting Reversals and Cycle Information. RECOMB-CG William Arndt, Jijun Tang
2007	—	`conf`	Improving Tree Search in Phylogenetic Reconstruction from Genome Rearrangement Data. WEA Fei Ye, Yan Guo, Andrew Lawson, Jijun Tang
2007	—	`ch.`	Reconstructing phylogenies from gene-content and gene-order data. Mathematics of Evolution and Phylogeny Bernard M. E. Moret, Jijun Tang, Tandy J. Warnow
2007	—	`conf`	Three Sequence Alignment and Ancestor Inference with Affine Gap Costs. BIOCOMP Feng Yue, Jijun Tang
2006	—	`conf`	Inferring Ancestral Chloroplast Genomes with Inverted Repea. BIOCOMP Liying Cui, Feng Yue, Claude W. dePamphilis, Bernard M. E. Moret, Jijun Tang
2006	C	`conf`	Succinct Text Indexes on Large Alphabet. TAMC Meng Zhang, Jijun Tang, Dong Guo, Liang Hu, Qiang Li
2005	C	`conf`	Improving Genome Rearrangement Phylogeny Using Sequence-Style Parsimony. BIBE Jijun Tang, Li-San Wang
2005	B	`conf`	Linear Programming for Phylogenetic Reconstruction Based on Gene Rearrangements. CPM Jijun Tang, Bernard M. E. Moret
2005	Misc	`conf`	Quartet-Based Phylogeny Reconstruction from Gene Orders. COCOON Tao Liu, Jijun Tang, Bernard M. E. Moret
2004	C	`conf`	Phylogenetic Reconstruction from Arbitrary Gene-Order Data. BIBE Jijun Tang, Bernard M. E. Moret, Liying Cui, Claude W. dePamphilis
2003	B	`conf`	Phylogenetic Reconstruction from Gene-Rearrangement Data with Unequal Gene Content. WADS Jijun Tang, Bernard M. E. Moret
2003	—	`conf`	Scaling up accurate phylogenetic reconstruction from gene-order data. ISMB (Supplement of Bioinformatics) Jijun Tang, Bernard M. E. Moret
2002	C	`conf`	Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order Data. WABI Bernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu
2002	J	`jnl`	Steps toward accurate reconstructions of phylogenies from gene-order data. J. Comput. Syst. Sci. Bernard M. E. Moret, Jijun Tang, Li-San Wang, Tandy J. Warnow