Jie Zhang

21 papers A* 1Misc 2Journal 15Unranked 3
YearRankTypeTitle / Venue / Authors
2024 J jnl
RSAM-Seg: A SAM-based Approach with Prior Knowledge Integration for Remote Sensing Image Semantic Segmentation.
CoRR
Jie Zhang, Xubing Yang, Rui Jiang, Wei Shao, Li Zhang
2024 J jnl
Text mining and portal development for gene-specific publications on Alzheimer's disease and other neurodegenerative diseases.
BMC Medical Informatics Decis. Mak.
Jiannan Liu, Huanmei Wu, Daniel H. Robertson, Jie Zhang
2022 J jnl
SPCS: a spatial and pattern combined smoothing method for spatial transcriptomic expression.
Briefings Bioinform.
Yusong Liu, Tongxin Wang, Ben Duggan, Michael F. Sharpnack, Kun Huang, Jie Zhang, Xiufen Ye, Travis S. Johnson
2021 J jnl
TPSC: a module detection method based on topology potential and spectral clustering in weighted networks and its application in gene co-expression module discovery.
BMC Bioinform.
Yusong Liu, Xiufen Ye, Christina Y. Yu, Wei Shao, Jie Hou, Weixing Feng, Jie Zhang, Kun Huang
2021 J jnl
TSUNAMI: Translational Bioinformatics Tool Suite for Network Analysis and Mining.
Genom. Proteom. Bioinform.
Zhi Huang, Zhi Han, Tongxin Wang, Wei Shao, Shunian Xiang, Paul Salama, Maher E. Rizkalla, Kun Huang, Jie Zhang
2021 A* conf
Transfer Learning via Optimal Transportation for Integrative Cancer Patient Stratification.
IJCAI
Ziyu Liu, Wei Shao, Jie Zhang, Min Zhang, Kun Huang
2021 J jnl
Weakly Supervised Deep Ordinal Cox Model for Survival Prediction From Whole-Slide Pathological Images.
IEEE Trans. Medical Imaging
Wei Shao, Tongxin Wang, Zhi Huang, Zhi Han, Jie Zhang, Kun Huang
2020 J jnl
Integrative Analysis of Pathological Images and Multi-Dimensional Genomic Data for Early-Stage Cancer Prognosis.
IEEE Trans. Medical Imaging
Wei Shao, Kun Huang, Zhi Han, Jun Cheng, Liang Cheng, Tongxin Wang, Liang Sun, Zixiao Lu, Jie Zhang, Daoqiang Zhang
2020 J jnl
Low-Rank Reorganization via Proportional Hazards Non-negative Matrix Factorization Unveils Survival Associated Gene Clusters.
CoRR
Zhi Huang, Paul Salama, Wei Shao, Jie Zhang, Kun Huang
2020 J jnl
Multi-task multi-modal learning for joint diagnosis and prognosis of human cancers.
Medical Image Anal.
Wei Shao, Tongxin Wang, Liang Sun, Tianhan Dong, Zhi Han, Zhi Huang, Jie Zhang, Daoqiang Zhang, Kun Huang
2019 J jnl
Generalized gene co-expression analysis via subspace clustering using low-rank representation.
BMC Bioinform.
Tongxin Wang, Jie Zhang, Kun Huang
2019 J jnl
LAmbDA: label ambiguous domain adaptation dataset integration reduces batch effects and improves subtype detection.
Bioinform.
Travis S. Johnson, Tongxin Wang, Zhi Huang, Christina Y. Yu, Yi Wu, Yatong Han, Yan Zhang, Kun Huang, Jie Zhang
2019 Misc conf
Topological Methods for Visualization and Analysis of High Dimensional Single-Cell RNA Sequencing Data.
PSB
Tongxin Wang, Travis S. Johnson, Jie Zhang, Kun Huang
2018 Misc conf
Genetic Mutations Associated with Histopathology Changes in Kidney Cancer.
AMIA
Jun Cheng, Zhi Han, Qianjin Feng, Liang Cheng, Jie Zhang, Kun Huang
2013 J jnl
Gene co-expression analysis predicts genetic aberration loci associated with colon cancer metastasis.
Int. J. Comput. Biol. Drug Des.
Jie Zhang, Shiwei Ni, Yang Xiang, Jeffrey D. Parvin, Yufeng Yang, Yongjian Zhou, Kun Huang
2012 J jnl
Weighted Frequent Gene Co-expression Network Mining to Identify Genes Involved in Genome Stability.
PLoS Comput. Biol.
Jie Zhang, Kewei Lu, Yang Xiang, Muhtadi Islam, Shweta Kotian, Zeina Kais, Cindy Lee, Mansi Arora, Hui-wen Liu, Jeffrey D. Parvin, Kun Huang
2011 — conf
Identifying smoking associated gene co-expression networks related to oral cancer initiation.
BIBM Workshops
Jie Zhang, Thomas Knobloch, Jeffrey D. Parvin, Christopher Weghorst, Kun Huang
2011 — conf
Predicting Parkinson's disease related genes using frequent gene co-expression analysis.
BIBM Workshops
Jie Zhang, Shiwei Ni, Jeffrey D. Parvin, Yufeng Yang, Kun Huang
2010 J jnl
Multi-dimensional discovery of biomarker and phenotype complexes.
BMC Bioinform.
Philip R. O. Payne, Kun Huang, Kristin Keen-Circle, Abhisek Kundu, Jie Zhang, Tara Borlawsky
2010 J jnl
Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia.
BMC Bioinform.
Jie Zhang, Yang Xiang, Liya Ding, Kristin Keen-Circle, Tara Borlawsky, Hatice Gulcin Ozer, Ruoming Jin, Philip R. O. Payne, Kun Huang
2009 — conf
Using Frequent Co-expression Network to Identify Gene Clusters for Breast Cancer Prognosis.
IJCBS
Jie Zhang, Kun Huang, Yang Xiang, Ruoming Jin