Jiayu Shang - RankMe

31 papers B 1Journal 29Unranked 1

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Quality of human-GenAI collaboration and its driving factors: A symbiotic agency perspective. Inf. Process. Manag. Jiayu Shang, Dan Huang, Songshan (Sam) Huang
2025	J	`jnl`	Classifying infinite-dimensional data with unified basis functions: An effective machine learning approach. Neurocomputing Jiayu Shang, Xiao-Jun Zeng
2025	J	`jnl`	From genomic signals to prediction tools: a critical feature analysis and rigorous benchmark for phage-host prediction. Briefings Bioinform. Jiayu Shang, Cheng Peng, Jiaojiao Guan, Dehan Cai, Donglin Wang, Yanni Sun
2025	J	`jnl`	GOPhage: protein function annotation for bacteriophages by integrating the genomic context. Briefings Bioinform. Jiaojiao Guan, Yongxin Ji, Cheng Peng, Wei Zou, Xubo Tang, Jiayu Shang, Yanni Sun
2025	J	`jnl`	GiantHunter: accurate detection of giant virus in metagenomic data using reinforcement-learning and Monte Carlo tree search. Bioinform. Fuchuan Qu, Cheng Peng, Jiaojiao Guan, Donglin Wang, Yanni Sun, Jiayu Shang
2025	J	`jnl`	Reinforcement learning-guided sample selection for improved identification of phage receptor binding proteins. Briefings Bioinform. Xiling Luo, Le Ou-Yang, Yang Shen, Yanni Sun, Jiayu Shang
2024	J	`jnl`	Accurate and efficient protein embedding using multi-teacher distillation learning. Bioinform. Jiayu Shang, Cheng Peng, Yongxin Ji, Jiaojiao Guan, Dehan Cai, Xubo Tang, Yanni Sun
2024	J	`jnl`	PhaGO: Protein function annotation for bacteriophages by integrating the genomic context. CoRR Jiaojiao Guan, Yongxin Ji, Cheng Peng, Wei Zou, Xubo Tang, Jiayu Shang, Yanni Sun
2024	J	`jnl`	ViraLM: empowering virus discovery through the genome foundation model. Bioinform. Cheng Peng, Jiayu Shang, Jiaojiao Guan, Donglin Wang, Yanni Sun
2023	—	`conf`	EDU-level Extractive Summarization with Varying Summary Lengths. EACL (Findings) Yuping Wu, Ching-Hsun Tseng, Jiayu Shang, Shengzhong Mao, Goran Nenadic, Xiao-Jun Zeng
2023	J	`jnl`	GDmicro: classifying host disease status with GCN and deep adaptation network based on the human gut microbiome data. Bioinform. Herui Liao, Jiayu Shang, Yanni Sun
2023	J	`jnl`	HOTSPOT: hierarchical host prediction for assembled plasmid contigs with transformer. Bioinform. Yongxin Ji, Jiayu Shang, Xubo Tang, Yanni Sun
2023	J	`jnl`	PhaGenus: genus-level classification of bacteriophages using a Transformer model. Briefings Bioinform. Jiaojiao Guan, Cheng Peng, Jiayu Shang, Xubo Tang, Yanni Sun
2023	J	`jnl`	PhaTYP: predicting the lifestyle for bacteriophages using BERT. Briefings Bioinform. Jiayu Shang, Xubo Tang, Yanni Sun
2023	J	`jnl`	PhaVIP: Phage VIrion Protein classification based on chaos game representation and Vision Transformer. Bioinform. Jiayu Shang, Cheng Peng, Xubo Tang, Yanni Sun
2023	J	`jnl`	Virus classification for viral genomic fragments using PhaGCN2. Briefings Bioinform. Jingzhe Jiang, Wen-Guang Yuan, Jiayu Shang, Ying-Hui Shi, Li-Ling Yang, Min Liu, Peng Zhu, Tao Jin, Yanni Sun, Li-Hong Yuan
2022	J	`jnl`	Accurate identification of bacteriophages from metagenomic data using Transformer. Briefings Bioinform. Jiayu Shang, Xubo Tang, Ruocheng Guo, Yanni Sun
2022	J	`jnl`	CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model. Briefings Bioinform. Jiayu Shang, Yanni Sun
2022	J	`jnl`	CHERRY: a Computational metHod for accuratE pRediction of virus-pRokarYotic interactions using a graph encoder-decoder model. CoRR Jiayu Shang, Yanni Sun
2022	J	`jnl`	EDU-level Extractive Summarization with Varying Summary Lengths. CoRR Yuping Wu, Ching-Hsun Tseng, Jiayu Shang, Shengzhong Mao, Goran Nenadic, Xiao-Jun Zeng
2022	J	`jnl`	HaploDMF: viral haplotype reconstruction from long reads via deep matrix factorization. Bioinform. Dehan Cai, Jiayu Shang, Yanni Sun
2022	J	`jnl`	RdRp-based sensitive taxonomic classification of RNA viruses for metagenomic data. Briefings Bioinform. Xubo Tang, Jiayu Shang, Yanni Sun
2022	J	`jnl`	UPANets: Learning from the Universal Pixel Attention Neworks. Entropy Ching-Hsun Tseng, Shin-Jye Lee, Jia-Nan Feng, Shengzhong Mao, Yuping Wu, Jiayu Shang, Xiao-Jun Zeng
2021	J	`jnl`	Bacteriophage classification for assembled contigs using Graph Convolutional Network. CoRR Jiayu Shang, Jingzhe Jiang, Yanni Sun
2021	J	`jnl`	Bacteriophage classification for assembled contigs using graph convolutional network. Bioinform. Jiayu Shang, Jingzhe Jiang, Yanni Sun
2021	B	`conf`	Construction Cost Index Prediction: A Visibility Graph Network Method. IJCNN Shengzhong Mao, Ching-Hsun Tseng, Jiayu Shang, Yuping Wu, Xiao-Jun Zeng
2021	J	`jnl`	Detecting the hosts of bacteriophages using GCN-based semi-supervised learning. CoRR Jiayu Shang, Yanni Sun
2021	J	`jnl`	UPANets: Learning from the Universal Pixel Attention Networks. CoRR Ching-Hsun Tseng, Shin-Jye Lee, Jia-Nan Feng, Shengzhong Mao, Yuping Wu, Jiayu Shang, Mou-Chung Tseng, Xiao-Jun Zeng
2020	J	`jnl`	ProDOMA: improve PROtein DOMAin classification for third-generation sequencing reads using deep learning. CoRR Nan Du, Jiayu Shang, Yanni Sun
2019	J	`jnl`	A binning tool to reconstruct viral haplotypes from assembled contigs. BMC Bioinform. Jiao Chen, Jiayu Shang, Jianrong Wang, Yanni Sun
2018	J	`jnl`	Fast detection method of quick response code based on run-length coding. IET Image Process. Shiren Li, Jiayu Shang, Zhikui Duan, Junwei Huang