Jiao Yuan

13 papers A* 3Journal 8Unranked 2
YearRankTypeTitle / Venue / Authors
2026 A* conf
Investigating Data Pruning for Pretraining Biological Foundation Models at Scale.
AAAI
Yifan Wu, Jiyue Jiang, Xichen Ye, Yiqi Wang, Chang Zhou, Yitao Xu, Jiayang Chen, He Hu, Weizhong Zhang, Cheng Jin, Jiao Yuan, Yu Li
2026 A* conf
RMSAGen: Integrating Multiple Sequence Alignment for Function RNA Design.
AAAI
Jiyue Jiang, Yanyu Chen, Qingchuan Zhang, Jiayi Li, Xiangyu Shi, Chang Zhou, Ziqian Lin, Jiuming Wang, Dongchen He, Liang Hong, Qintong Li, Pengan Chen, Jiayang Chen, Xinrui Zhang, Jiao Yuan, Tianqing Zhang, Yu Li
2025 J jnl
A data-intelligence-intensive bioinformatics copilot system for large-scale omics research and scientific insights.
Briefings Bioinform.
Yang Liu, Rongbo Shen, Lu Zhou, Qingyu Xiao, Jiao Yuan, Yixue Li
2025 J jnl
Artificial intelligence in bioinformatics: a survey.
Briefings Bioinform.
Jiyue Jiang, Yunke Li, Shiwei Cao, Yuheng Shan, Yuexing Liu, Tianyi Fei, Yule Yu, Yi Feng, Yu Li, Yixue Li, Jiao Yuan
2025 J jnl
Investigating Data Pruning for Pretraining Biological Foundation Models at Scale.
CoRR
Yifan Wu, Jiyue Jiang, Xichen Ye, Yiqi Wang, Chang Zhou, Yitao Xu, Jiayang Chen, He Hu, Weizhong Zhang, Cheng Jin, Jiao Yuan, Yu Li
2025 A* conf
RBPtool: A Deep Language Model Framework for Multi-Resolution RBP-RNA Binding Prediction and RNA Molecule Design.
EMNLP
Jiyue Jiang, Yitao Xu, Zikang Wang, Yihan Ye, Yanruisheng Shao, Yuheng Shan, Jiuming Wang, Xiaodan Fan, Jiao Yuan, Yu Li
2024 J jnl
Graph domain adaptation-based framework for gene expression enhancement and cell type identification in large-scale spatially resolved transcriptomics.
Briefings Bioinform.
Rongbo Shen, Meiling Cheng, Wencang Wang, Qi Fan, Huan Yan, Jiayue Wen, Zhiyuan Yuan, Jianhua Yao, Yixue Li, Jiao Yuan
2020 — conf
A Mining Frequent Itemsets Algorithm in Stream Data Based on Sliding Time Decay Window.
AIPR
Xin Lu, Shaonan Jin, Xun Wang, Jiao Yuan, Kun Fu, Ke Yang
2018 — conf
Analysis and Optimization of Bottlenecks via Simulation.
IEEM
Jiao Yuan, Runtong Zhang
2016 J jnl
Computational identification of piRNA targets on mouse mRNAs.
Bioinform.
Jiao Yuan, Peng Zhang, Ya Cui, Jiajia Wang, Geir Skogerbø, Da-Wei Huang, Runsheng Chen, Shunmin He
2016 J jnl
NPInter v3.0: an upgraded database of noncoding RNA-associated interactions.
Database J. Biol. Databases Curation
Yajing Hao, Wei Wu, Hui Li, Jiao Yuan, Jianjun Luo, Yi Zhao, Runsheng Chen
2014 J jnl
NONCODEv4: exploring the world of long non-coding RNA genes.
Nucleic Acids Res.
Chaoyong Xie, Jiao Yuan, Hui Li, Ming Li, Guoguang Zhao, Dechao Bu, Weimin Zhu, Wei Wu, Runsheng Chen, Yi Zhao
2014 J jnl
NPInter v2.0: an updated database of ncRNA interactions.
Nucleic Acids Res.
Jiao Yuan, Wei Wu, Chaoyong Xie, Guoguang Zhao, Yi Zhao, Runsheng Chen