Jianlin Shi

25 papers Misc 9Journal 11Unranked 5
YearRankTypeTitle / Venue / Authors
2025 J jnl
Accelerating Clinical NLP at Scale with a Hybrid Framework with Reduced GPU Demands: A Case Study in Dementia Identification.
CoRR
Jianlin Shi, Qiwei Gan, Elizabeth Hanchrow, Annie E. Bowles, Johnathan C. Stanley, Adam Bress, Jordana B. Cohen, Patrick R. Alba
2025 — conf
Comparative Analysis of NLP Models for Automatic LOINC Document Ontology Named Entity Recognition in Clinical Note Titles.
MedInfo
Annie E. Bowles, Qiwei Gan, Elizabeth Hanchrow, Scott L. DuVall, Patrick R. Alba, Jianlin Shi
2025 — conf
Development and Evaluation of Natural Language Processing Methods for Extracting Key Melanoma Pathology Concepts.
MedInfo
Johnathan C. Stanley, Mengke Hu, Cecelia J. Madison, Jianlin Shi, Tiffany Quilter, Lacy Castleton, Elizabeth E. Hanchrow, Julie A. Lynch, Wesley Y. Yu, Patrick R. Alba
2025 J jnl
Initial Investigation of LLM-Assisted Development of Rule-Based Clinical NLP System.
CoRR
Jianlin Shi, Brian T. Bucher
2025 — conf
The Best of All Worlds: A Hybrid Approach to Cohort Identification with Rules, Small and Large Language Models.
MedInfo
Qiwei Gan, Jianlin Shi, Annie E. Bowles, Elizabeth Hanchrow, John Stanley, Mengke Hu, Scott L. DuVall, Patrick R. Alba
2023 J jnl
A deep learning approach for medication disposition and corresponding attributes extraction.
J. Biomed. Informatics
Qiwei Gan, Mengke Hu, Kelly S. Peterson, Hannah Eyre, Patrick R. Alba, Annie E. Bowles, Johnathan C. Stanley, Scott L. DuVall, Jianlin Shi
2023 J jnl
Representing and utilizing clinical textual data for real world studies: An OHDSI approach.
J. Biomed. Informatics
Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Xiaoyan Wang, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu
2022 J jnl
GARDE: a standards-based clinical decision support platform for identifying population health management cohorts.
J. Am. Medical Informatics Assoc.
Richard L. Bradshaw, Kensaku Kawamoto, Kimberly A. Kaphingst, Wendy Kohlmann, Rachel Hess, Michael C. Flynn, Claude J. Nanjo, Phillip B. Warner, Jianlin Shi, Keaton L. Morgan, Kadyn Kimball, Pallavi Ranade-Kharkar, Ophira Ginsburg, Melody Goodman, Rachelle Chambers, Devin M. Mann, Scott P. Narus, Javier Gonzalez, Shane Loomis, Priscilla Chan, Rachel Monahan, Emerson P. Borsato, David E. Shields, Douglas K. Martin, Cecilia M. Kessler, Guilherme Del Fiol
2021 Misc conf
Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python.
AMIA
Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson
2021 J jnl
Launching into clinical space with medspaCy: a new clinical text processing toolkit in Python.
CoRR
Hannah Eyre, Alec B. Chapman, Kelly S. Peterson, Jianlin Shi, Patrick R. Alba, Makoto M. Jones, Tamara L. Box, Scott L. DuVall, Olga V. Patterson
2020 Misc conf
Removing barriers to clinical text processing with MedSpaCy.
AMIA
Hannah Eyre, Olga V. Patterson, Jianlin Shi, Kelly S. Peterson, Alec B. Chapman, Patrick R. Alba, Scott L. DuVall
2019 J jnl
A generic rule-based system for clinical trial patient selection.
CoRR
Jianlin Shi, Kevin Graves, John F. Hurdle
2019 J jnl
Automatic identification of recent high impact clinical articles in PubMed to support clinical decision making using time-agnostic features.
J. Biomed. Informatics
Jiantao Bian, Samir E. AbdelRahman, Jianlin Shi, Guilherme Del Fiol
2019 Misc conf
Determination of Marital Status of Patients from Structured and Unstructured Electronic Healthcare Data.
AMIA
Brian T. Bucher, Jianlin Shi, Robert J. Pettit, Jeffrey P. Ferraro, Wendy W. Chapman, Adi V. Gundlapalli
2019 Misc conf
Extracting Disease Onset from Family History Comments in the Electronic Health Record using Fast Healthcare Interoperability Resources.
AMIA
Jianlin Shi, Kensaku Kawamoto, Wendy Kohlmann, Danielle L. Mowery, Richard L. Bradshaw, Subhadeep Deep, Wendy W. Chapman, Guilherme Del Fiol
2019 J jnl
FastContext: an efficient and scalable implementation of the ConText algorithm.
CoRR
Jianlin Shi, John F. Hurdle
2019 Misc conf
Using Natural Language Processing to improve EHR Structured Data-based Surgical Site Infection Surveillance.
AMIA
Jianlin Shi, Siru Liu, Liese C. Pruitt, Carolyn Luppens, Jeffrey P. Ferraro, Adi V. Gundlapalli, Wendy W. Chapman, Brian T. Bucher
2018 J jnl
Trie-based rule processing for clinical NLP: A use-case study of
J. Biomed. Informatics
Jianlin Shi, John F. Hurdle
2017 — conf
Extracting Intrauterine Device Usage from Clinical Texts Using Natural Language Processing.
ICHI
Jianlin Shi, Danielle L. Mowery, Mingyuan Zhang, Jessica Sanders, Wendy W. Chapman, Lori Gawron
2016 J jnl
A method for the development of disease-specific reference standards vocabularies from textual biomedical literature resources.
Artif. Intell. Medicine
Liqin Wang, Bruce E. Bray, Jianlin Shi, Guilherme Del Fiol, Peter J. Haug
2016 Misc conf
PrecMed: A collaborative environment for precision medicine research and practice.
AMIA
Jianlin Shi, Lance Pflieger
2016 Misc conf
RuSH: a Rule-based Segmentation Tool Using Hashing for Extremely Accurate Sentence Segmentation of Clinical Text.
AMIA
Jianlin Shi, Danielle L. Mowery, Kristina M. Doing-Harris, John F. Hurdle
2015 Misc conf
POETenceph - Automatic identification of clinical notes indicating encephalopathy using a realist ontology.
AMIA
Kristina Doing-Harris, Charlene R. Weir, Sean Igo, Jianlin Shi, YiJun Shao, John F. Hurdle
2015 — conf
UtahPOET: Disorder Mention Identification and Context Slot Filling with Cognitive Inspiration.
SemEval@NAACL-HLT
Kristina Doing-Harris, Sean Igo, Jianlin Shi, John F. Hurdle
2014 Misc conf
Online Patient Center: Expanding Patient Portals by Integrating Patient-Generated Data Directly into a Primary Care Provider's EHR Workflow.
AMIA
Jon-David Ethington, Jianlin Shi, Scott D. Nelson