Jianhua Ruan - RankMe

49 papers A* 4A 1B 2Journal 24Unranked 18

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Pan-cancer Outcome Prediction using Multi-classifier Systems. BCB Sakhawat Hossain Saimon, Tanzira Najnin, Jianhua Ruan
2024	A*	`conf`	A Novel Feature Space Augmentation Method to Improve Classification Performance and Evaluation Reliability. KDD Sakhawat Hossain Saimon, Tanzira Najnin, Jianhua Ruan
2022	J	`jnl`	Construction and Evaluation of Robust Interpretation Models for Breast Cancer Metastasis Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. Nahim Adnan, Maryam Zand, Tim Hui-Ming Huang, Jianhua Ruan
2020	J	`jnl`	Robust edge-based biomarker discovery improves prediction of breast cancer metastasis. BMC Bioinform. Nahim Adnan, Chengwei Lei, Jianhua Ruan
2019	B	`conf`	A Novel Multiple Classifier Generation and Combination Framework Based on Fuzzy Clustering and Individualized Ensemble Construction. DSAA Zhen Gao, Maryam Zand, Jianhua Ruan
2019	J	`jnl`	A Novel Multiple Classifier Generation and Combination Framework Based on Fuzzy Clustering and Individualized Ensemble Construction. CoRR Zhen Gao, Maryam Zand, Jianhua Ruan
2019	B	`conf`	Probabilistic Margin-Aware Multi-Label Feature Selection by Preserving Spatial Consistency. IJCNN Yu Yin, Shuai An, Jun Wang, Jinmao Wei, Jianhua Ruan
2018	—	`conf`	ANNC: AUC-Based Feature Selection by Maximizing Nearest Neighbor Complementarity. PRICAI (1) Xuemeng Jiang, Jun Wang, Jinmao Wei, Jianhua Ruan, Gang Yu
2018	—	`conf`	An integrative approach to transcriptional co-regulatory network construction and characterization in Arabidopsis. ICCABS Maryam Zand, Zhen Gao, Jinmao Wei, Garry Sunter, Jianhua Ruan
2018	—	`conf`	Probabilistic Topic and Role Model for Information Diffusion in Social Network. PAKDD (2) Hengpeng Xu, Jinmao Wei, Zhenglu Yang, Jianhua Ruan, Jun Wang
2018	A	`conf`	Semi-Supervised Multi-Label Feature Selection by Preserving Feature-Label Space Consistency. CIKM Yuanyuan Xu, Jun Wang, Shuai An, Jinmao Wei, Jianhua Ruan
2018	J	`jnl`	The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications. BMC Bioinform. Xiaoming Liu, Lei Xie, Zhijin Wu, Kai Wang, Zhongming Zhao, Jianhua Ruan, Degui Zhi
2017	J	`jnl`	Computational modeling of in vivo and in vitro protein-DNA interactions by multiple instance learning. Bioinform. Zhen Gao, Jianhua Ruan
2017	J	`jnl`	The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools. BMC Bioinform. Zhandong Liu, W. Jim Zheng, Genevera I. Allen, Yin Liu, Jianhua Ruan, Zhongming Zhao
2017	J	`jnl`	The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: putting systems biology to work. BMC Syst. Biol. W. Jim Zheng, Jianhua Ruan, Hua Xu, Zhongming Zhao, Zhangdong Liu
2017	J	`jnl`	Utilizing networks for differential analysis of chromatin interactions. J. Bioinform. Comput. Biol. Lu Liu, Jianhua Ruan
2016	J	`jnl`	Advancing Systems Biology in the International Conference on Intelligent Biology and Medicine (ICIBM) 2015. BMC Syst. Biol. Zhongming Zhao, Yunlong Liu, Yufei Huang, Kun Huang, Jianhua Ruan
2016	J	`jnl`	Structure-based prediction of drug side effects using a novel classification algorithm. Int. J. Comput. Biol. Drug Des. Md. Jamiul Jahid, Jianhua Ruan
2014	J	`jnl`	A personalized committee classification approach to improving prediction of breast cancer metastasis. Bioinform. Md. Jamiul Jahid, Tim Hui-Ming Huang, Jianhua Ruan
2013	J	`jnl`	A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks. BMC Genom. Zhen Gao, Ruizhe Zhao, Jianhua Ruan
2013	J	`jnl`	A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity. Bioinform. Chengwei Lei, Jianhua Ruan
2013	—	`conf`	A structure-based approach to predicting in vitro transcription factor-DNA interaction. GENSiPS Zhen Gao, Jianhua Ruan
2013	—	`conf`	An ensemble approach for drug side effect prediction. BIBM Md. Jamiul Jahid, Jianhua Ruan
2013	—	`conf`	Network-based pathway enrichment analysis. BIBM Lu Liu, Jianhua Ruan
2012	—	`conf`	A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks. RACS Zhen Gao, Ruizhe Zhao, Jianhua Ruan
2012	—	`conf`	A novel approach for cancer outcome prediction using personalized classifier. RACS Md. Jamiul Jahid, Jianhua Ruan
2012	—	`conf`	A random walk based approach for improving protein-protein interaction network and protein complex prediction. BIBM Chengwei Lei, Jianhua Ruan
2012	—	`conf`	Functional evaluation and analysis of predicted miRNA-mRNA regulatory network. RACS Saleh Tamim, Jianhua Ruan
2012	—	`conf`	Network-based classification of recurrent endometrial cancers using high-throughput DNA methylation data. BCB Jianhua Ruan, Md. Jamiul Jahid, Fei Gu, Chengwei Lei, Yi-Wen Huang, Ya-Ting Hsu, David G. Mutch, Chun-Liang Chen, Nameer B. Kirma, Tim Hui-Ming Huang
2011	—	`conf`	Identification of biomarkers in breast cancer metastasis by integrating protein-protein interaction network and gene expression data. GENSiPS Md. Jamiul Jahid, Jianhua Ruan
2011	J	`jnl`	Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana. BMC Bioinform. Jianhua Ruan, Joseph Perez, Brian Hernandez, Chengwei Lei, Garry Sunter, Valerie M. Sponsel
2010	J	`jnl`	A general co-expression network-based approach to gene expression analysis: comparison and applications. BMC Syst. Biol. Jianhua Ruan, Angela K. Dean, Weixiong Zhang
2010	J	`jnl`	A particle swarm optimization-based algorithm for finding gapped motifs. BioData Min. Chengwei Lei, Jianhua Ruan
2010	J	`jnl`	Building and analyzing protein interactome networks by cross-species comparisons. BMC Syst. Biol. Amy M. Wiles, Mark Doderer, Jianhua Ruan, Tingting Gu, Ravi Dashnamoorthy, Barron Blackman, Alexander J. R. Bishop
2010	—	`conf`	Finding Gapped Motifs by a Novel Evolutionary Algorithm. EvoBIO Chengwei Lei, Jianhua Ruan
2010	—	`conf`	Promoter prediction based on a multiple instance learning scheme. BCB Xuefeng Zhou, Jianhua Ruan, Weixiong Zhang
2009	A*	`conf`	A Fully Automated Method for Discovering Community Structures in High Dimensional Data. ICDM Jianhua Ruan
2009	J	`jnl`	A novel swarm intelligence algorithm for finding DNA motifs. Int. J. Comput. Biol. Drug Des. Chengwei Lei, Jianhua Ruan
2009	J	`jnl`	A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes. BMC Bioinform. Angela K. Dean, Stephen E. Harris, Ivo Kalajzic, Jianhua Ruan
2007	A*	`conf`	An Efficient Spectral Algorithm for Network Community Discovery and Its Applications to Biological and Social Networks. ICDM Jianhua Ruan, Weixiong Zhang
2007	J	`jnl`	Characterization and Identification of MicroRNA Core Promoters in Four Model Species. PLoS Comput. Biol. Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang
2006	J	`jnl`	A bi-dimensional regression tree approach to the modeling of gene expression regulation. Bioinform. Jianhua Ruan, Weixiong Zhang
2006	—	`conf`	Identification and Evaluation of Functional Modules in Gene Co-expression Networks. Systems Biology and Computational Proteomics Jianhua Ruan, Weixiong Zhang
2006	A*	`conf`	Identification and Evaluation of Weak Community Structures in Networks. AAAI Jianhua Ruan, Weixiong Zhang
2005	J	`jnl`	CAGER: classification analysis of gene expression regulation using multiple information sources. BMC Bioinform. Jianhua Ruan, Weixiong Zhang
2005	—	`conf`	Computational Characterization and Identification of Core Promoters of MicroRNA Genes in Systems Biology and Regulatory Genomics Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang
2004	J	`jnl`	An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots. Bioinform. Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
2004	J	`jnl`	ILM: a web server for predicting RNA secondary structures with pseudoknots. Nucleic Acids Res. Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
2003	—	`conf`	An Iterative Loop Matching Approach to the Prediction of RNA Secondary Stru. CSB Jianhua Ruan, Gary D. Stormo, Weixiong Zhang