Jianguo Xia

31 papers Journal 30
YearRankTypeTitle / Venue / Authors
2024 J jnl
Common data models to streamline metabolomics processing and annotation, and implementation in a Python pipeline.
PLoS Comput. Biol.
Joshua M. Mitchell, Yuanye Chi, Maheshwor Thapa, Zhiqiang Pang, Jianguo Xia, Shuzhao Li
2024 J jnl
MRI study on hippocampal subfield volume loss and abnormal functional connectivity in patients with diabetic retinopathy.
BMC Bioinform.
Yaqi Song, Zhijun Zhou, Weiqi Ji, Ning Wang, Liang He, Ji Zhang, Xiujuan Chen, Jianguo Xia, Weizhong Tian
2023 J jnl
Comprehensive investigation of pathway enrichment methods for functional interpretation of LC-MS global metabolomics data.
Briefings Bioinform.
Yao Lu, Zhiqiang Pang, Jianguo Xia
2023 J jnl
MicrobiomeAnalyst 2.0: comprehensive statistical, functional and integrative analysis of microbiome data.
Nucleic Acids Res.
Yao Lu, Guangyan Zhou, Jessica Ewald, Zhiqiang Pang, Tanisha Shiri, Jianguo Xia
2023 J jnl
Spectral CT - a new supplementary method for preoperative assessment of pathological grades of esophageal squamous cell carcinoma.
BMC Medical Imaging
Yi Wang, Weizhong Tian, Shuangfeng Tian, Liang He, Jianguo Xia, Ji Zhang
2022 J jnl
OmicsNet 2.0: a web-based platform for multi-omics integration and network visual analytics.
Nucleic Acids Res.
Guangyan Zhou, Zhiqiang Pang, Yao Lu, Jessica Ewald, Jianguo Xia
2021 J jnl
FastBMD: an online tool for rapid benchmark dose-response analysis of transcriptomics data.
Bioinform.
Jessica Ewald, Othman Soufan, Jianguo Xia, Niladri Basu
2021 J jnl
MetaboAnalyst 5.0: narrowing the gap between raw spectra and functional insights.
Nucleic Acids Res.
Zhiqiang Pang, Jasmine Chong, Guangyan Zhou, David A. de Lima Morais, Le Chang, Michel Barrette, Carol Gauthier, Pierre-Étienne Jacques, Shuzhao Li, Jianguo Xia
2021 J jnl
OmicsAnalyst: a comprehensive web-based platform for visual analytics of multi-omics data.
Nucleic Acids Res.
Guangyan Zhou, Jessica Ewald, Jianguo Xia
2020 J jnl
miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology.
Nucleic Acids Res.
Le Chang, Guangyan Zhou, Othman Soufan, Jianguo Xia
2019 — ch.
Metabolome Analysis.
Encyclopedia of Bioinformatics and Computational Biology (2)
Saravanan Dayalan, Jianguo Xia, Rachel A. Spicer, Reza M. Salek, Ute Roessner
2019 J jnl
NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis.
Nucleic Acids Res.
Guangyan Zhou, Othman Soufan, Jessica Ewald, Robert E. W. Hancock, Niladri Basu, Jianguo Xia
2018 J jnl
MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis.
Nucleic Acids Res.
Jasmine Chong, Othman Soufan, Carin Li, Iurie Caraus, Shuzhao Li, Guillaume Bourque, David S. Wishart, Jianguo Xia
2018 J jnl
MetaboAnalystR: an R package for flexible and reproducible analysis of metabolomics data.
Bioinform.
Jasmine Chong, Jianguo Xia
2018 J jnl
OmicsNet: a web-based tool for creation and visual analysis of biological networks in 3D space.
Nucleic Acids Res.
Guangyan Zhou, Jianguo Xia
2017 J jnl
MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data.
Nucleic Acids Res.
Achal Dhariwal, Jasmine Chong, Salam Habib, Irah L. King, Luis B. Agellon, Jianguo Xia
2016 J jnl
miRNet - dissecting miRNA-target interactions and functional associations through network-based visual analysis.
Nucleic Acids Res.
Yannan Fan, Keith Siklenka, Simran K. Arora, Paula Ribeiro, Sarah Kimmins, Jianguo Xia
2015 J jnl
MetaboAnalyst 3.0 - making metabolomics more meaningful.
Nucleic Acids Res.
Jianguo Xia, Igor Sinelnikov, Beomsoo Han, David S. Wishart
2014 J jnl
NetworkAnalyst - integrative approaches for protein-protein interaction network analysis and visual exploration.
Nucleic Acids Res.
Jianguo Xia, Maia J. Benner, Robert E. W. Hancock
2013 J jnl
HMDB 3.0 - The Human Metabolome Database in 2013.
Nucleic Acids Res.
David S. Wishart, Timothy Jewison, Anchi Guo, Michael Wilson, Craig Knox, Yifeng Liu, Yannick Djoumbou, Rupasri Mandal, Farid Aziat, Edison Dong, Souhaila Bouatra, Igor Sinelnikov, David Arndt, Jianguo Xia, Philip Liu, Faizath Yallou, Trent C. Bjorndahl, Rolando Perez-Pineiro, Roman Eisner, Felicity Allen, Vanessa Neveu, Russell Greiner, Augustin Scalbert
2013 J jnl
INMEX - a web-based tool for integrative meta-analysis of expression data.
Nucleic Acids Res.
Jianguo Xia, Christopher D. Fjell, Matthew L. Mayer, Olga M. Pena, David S. Wishart, Robert E. W. Hancock
2013 J jnl
INVEX - a web-based tool for integrative visualization of expression data.
Bioinform.
Jianguo Xia, Ngan H. Lyle, Matthew L. Mayer, Olga M. Pena, Robert E. W. Hancock
2012 J jnl
METAGENassist: a comprehensive web server for comparative metagenomics.
Nucleic Acids Res.
David Arndt, Jianguo Xia, Yifeng Liu, You Zhou, Anchi Guo, Joseph A. Cruz, Igor Sinelnikov, Karen Budwill, Camilla L. Nesbø, David S. Wishart
2012 J jnl
MetaboAnalyst 2.0 - a comprehensive server for metabolomic data analysis.
Nucleic Acids Res.
Jianguo Xia, Rupasri Mandal, Igor Sinelnikov, David Broadhurst, David S. Wishart
2011 J jnl
MetATT: a web-based metabolomics tool for analyzing time-series and two-factor datasets.
Bioinform.
Jianguo Xia, Igor Sinelnikov, David S. Wishart
2010 J jnl
MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data.
Nucleic Acids Res.
Jianguo Xia, David S. Wishart
2010 J jnl
MetPA: a web-based metabolomics tool for pathway analysis and visualization.
Bioinform.
Jianguo Xia, David S. Wishart
2010 J jnl
SMPDB: The Small Molecule Pathway Database.
Nucleic Acids Res.
Alex Frolkis, Craig Knox, Emilia Lim, Timothy Jewison, Vivian Law, David D. Hau, Philip Liu, Bijaya Gautam, Son Ly, Anchi Guo, Jianguo Xia, Yongjie Liang, Savita Shrivastava, David S. Wishart
2009 J jnl
HMDB: a knowledgebase for the human metabolome.
Nucleic Acids Res.
David S. Wishart, Craig Knox, Anchi Guo, Roman Eisner, Nelson Young, Bijaya Gautam, David D. Hau, Nick Psychogios, Edison Dong, Souhaila Bouatra, Rupasri Mandal, Igor Sinelnikov, Jianguo Xia, Leslie Jia, Joseph A. Cruz, Emilia Lim, Constance A. Sobsey, Savita Shrivastava, Paul Huang, Philip Liu, Lydia Fang, Jun Peng, Ryan Fradette, Dean Cheng, Dan Tzur, Melisa Clements, Avalyn Lewis, Andrea De Souza, Azaret Zuniga, Margot Dawe, Yeping Xiong, Derrick Clive, Russell Greiner, Alsu Nazyrova, Rustem Shaykhutdinov, Liang Li, Hans J. Vogel, Ian J. Forsythe
2009 J jnl
MetaboAnalyst: a web server for metabolomic data analysis and interpretation.
Nucleic Acids Res.
Jianguo Xia, Nick Psychogios, Nelson Young, David S. Wishart
2008 J jnl
MetaboMiner - semi-automated identification of metabolites from 2D NMR spectra of complex biofluids.
BMC Bioinform.
Jianguo Xia, Trent C. Bjorndahl, Peter Tang, David S. Wishart