Jianfeng Pei

26 papers A* 1Journal 25
YearRankTypeTitle / Venue / Authors
2025 J jnl
Benchmarking Cofolding Methods for Molecular Glue Ternary Structure Prediction.
J. Chem. Inf. Model.
Yiyan Liao, Jintao Zhu, Juan Xie, Luhua Lai, Jianfeng Pei
2024 J jnl
Challenging Complexity with Simplicity: Rethinking the Role of Single-Step Models in Computer-Aided Synthesis Planning.
J. Chem. Inf. Model.
Junren Li, Kangjie Lin, Jianfeng Pei, Luhua Lai
2024 A* conf
DeltaDock: A Unified Framework for Accurate, Efficient, and Physically Reliable Molecular Docking.
NeurIPS
Jiaxian Yan, Zaixi Zhang, Jintao Zhu, Kai Zhang, Jianfeng Pei, Qi Liu
2024 J jnl
DeltaDock: A Unified Framework for Accurate, Efficient, and Physically Reliable Molecular Docking.
CoRR
Jiaxian Yan, Zaixi Zhang, Jintao Zhu, Kai Zhang, Jianfeng Pei, Qi Liu
2022 J jnl
Advances and Challenges in De Novo Drug Design Using Three-Dimensional Deep Generative Models.
J. Chem. Inf. Model.
Weixin Xie, Fanhao Wang, Yibo Li, Luhua Lai, Jianfeng Pei
2022 J jnl
MolMiner: You Only Look Once for Chemical Structure Recognition.
J. Chem. Inf. Model.
Youjun Xu, Jinchuan Xiao, Chia-Han Chou, Jianhang Zhang, Jintao Zhu, Qiwan Hu, Hemin Li, Ningsheng Han, Bingyu Liu, Shuaipeng Zhang, Jinyu Han, Zhen Zhang, Shuhao Zhang, Weilin Zhang, Luhua Lai, Jianfeng Pei
2022 J jnl
MolMiner: You only look once for chemical structure recognition.
CoRR
Youjun Xu, Jinchuan Xiao, Chia-Han Chou, Jianhang Zhang, Jintao Zhu, Qiwan Hu, Hemin Li, Ningsheng Han, Bingyu Liu, Shuaipeng Zhang, Jinyu Han, Zhen Zhang, Shuhao Zhang, Weilin Zhang, Luhua Lai, Jianfeng Pei
2022 J jnl
Prediction of liquid-liquid phase separating proteins using machine learning.
BMC Bioinform.
Xiaoquan Chu, Tanlin Sun, Qian Li, Youjun Xu, Zhuqing Zhang, Luhua Lai, Jianfeng Pei
2021 J jnl
A transferable deep learning approach to fast screen potential antiviral drugs against SARS-CoV-2.
Briefings Bioinform.
Shiwei Wang, Qi Sun, Youjun Xu, Jianfeng Pei, Luhua Lai
2021 J jnl
Learning to design drug-like molecules in three-dimensional space using deep generative models.
CoRR
Yibo Li, Jianfeng Pei, Luhua Lai
2020 J jnl
Super Edge-Connected Linear Hypergraphs.
Parallel Process. Lett.
Shangwei Lin, Jianfeng Pei, Chunfang Li
2018 J jnl
Analysis of protein features and machine learning algorithms for prediction of druggable proteins.
Quant. Biol.
Tanlin Sun, Luhua Lai, Jianfeng Pei
2018 J jnl
CavityPlus: a web server for protein cavity detection with pharmacophore modelling, allosteric site identification and covalent ligand binding ability prediction.
Nucleic Acids Res.
Youjun Xu, Shiwei Wang, Qiwan Hu, Shuaishi Gao, Xiaomin Ma, Weilin Zhang, Yihang Shen, Fangjin Chen, Luhua Lai, Jianfeng Pei
2017 J jnl
Computational Multitarget Drug Design.
J. Chem. Inf. Model.
Weilin Zhang, Jianfeng Pei, Luhua Lai
2017 J jnl
Deep Learning Based Regression and Multiclass Models for Acute Oral Toxicity Prediction with Automatic Chemical Feature Extraction.
J. Chem. Inf. Model.
Youjun Xu, Jianfeng Pei, Luhua Lai
2017 J jnl
Molecular Graph Encoding Convolutional Neural Networks for Automatic Chemical Feature Extraction.
CoRR
Youjun Xu, Jianfeng Pei, Luhua Lai
2017 J jnl
PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database.
Nucleic Acids Res.
Xia Wang, Yihang Shen, Shiwei Wang, Shiliang Li, Weilin Zhang, Xiaofeng Liu, Luhua Lai, Jianfeng Pei, Honglin Li
2017 J jnl
Sequence-based prediction of protein protein interaction using a deep-learning algorithm.
BMC Bioinform.
Tanlin Sun, Bo Zhou, Luhua Lai, Jianfeng Pei
2017 J jnl
Statistical Analysis and Prediction of Covalent Ligand Targeted Cysteine Residues.
J. Chem. Inf. Model.
Weilin Zhang, Jianfeng Pei, Luhua Lai
2015 J jnl
Deep Learning for Drug-Induced Liver Injury.
J. Chem. Inf. Model.
Youjun Xu, Ziwei Dai, Fangjin Chen, Shuaishi Gao, Jianfeng Pei, Luhua Lai
2014 J jnl
iDrug: a web-accessible and interactive drug discovery and design platform.
J. Cheminformatics
Xia Wang, Haipeng Chen, Feng Yang, Jiayu Gong, Shiliang Li, Jianfeng Pei, Xiaofeng Liu, Hualiang Jiang, Luhua Lai, Honglin Li
2011 J jnl
LigBuilder 2: A Practical
J. Chem. Inf. Model.
Yaxia Yuan, Jianfeng Pei, Luhua Lai
2007 J jnl
A Large Descriptor Set and a Probabilistic Kernel-Based Classifier Significantly Improve Druglikeness Classification.
J. Chem. Inf. Model.
Qingliang Li, Andreas Bender, Jianfeng Pei, Luhua Lai
2005 J jnl
Improving the Quality of 3D-QSAR by Using Flexible-Ligand Receptor Models.
J. Chem. Inf. Model.
Jianfeng Pei, Hao Chen, Zhenming Liu, Xiaofeng Han, Qi Wang, Bin Shen, Jiaju Zhou, Luhua Lai
2005 J jnl
Virtual Screening of Novel Noncovalent Inhibitors for SARS-CoV 3C-like Proteinase.
J. Chem. Inf. Model.
Zhenming Liu, Changkang Huang, Keqiang Fan, Ping Wei, Hao Chen, Shiyong Liu, Jianfeng Pei, Lei Shi, Bo Li, Kun Yang, Ying Liu, Luhua Lai
2003 J jnl
3D-QSAR and Receptor Modeling of Tyrosine Kinase Inhibitors with Flexible Atom Receptor Model (FLARM).
J. Chem. Inf. Comput. Sci.
Tao Peng, Jianfeng Pei, Jiaju Zhou