Jian Zhao

11 papers Journal 10Unranked 1
YearRankTypeTitle / Venue / Authors
2025 J jnl
CircAI: a comprehensive database of CircRNA associated with A-to-I RNA editing.
Database J. Biol. Databases Curation
Yulan Wang, Lingxiao Zou, Jian Zhao, Jing Wu, Meng Zhang, Jingjing Liu, Quan Wang, Xuejiang Guo, Xiaofeng Song, Yixuan Wang
2025 J jnl
THOR: a TMB heterogeneity-adaptive optimization model predicts immunotherapy response using clonal genomic features in group-structured data.
Briefings Bioinform.
Yixuan Wang, Yanfang Guan, Xin Lai, Yuqian Liu, Zhili Chang, Xiaonan Wang, Quan Wang, Jingjing Liu, Jian Zhao, Shuanying Yang, Jiayin Wang, Xiaofeng Song
2024 J jnl
DeepIRES: a hybrid deep learning model for accurate identification of internal ribosome entry sites in cellular and viral mRNAs.
Briefings Bioinform.
Jian Zhao, Zhewei Chen, Meng Zhang, Lingxiao Zou, Shan He, Jingjing Liu, Quan Wang, Xiaofeng Song, Jing Wu
2023 — conf
A Statistical Explainable Learning Model Optimizing Co-localization of Multidimensional Positivity Thresholds in Immunotherapy Decision-Supporting.
BIBM
Yixuan Wang, Jingjing Liu, Jian Zhao, Jiayin Wang, Quan Wang, Xiaofeng Song
2023 J jnl
Genome-wide perturbations of A-to-I RNA editing dysregulated circular RNAs promoting the development of cervical cancer.
Comput. Biol. Medicine
Yulan Wang, Jian Zhao, Jing Wu, Jingjing Liu, Yixuan Wang, Tianyi Xu, Meng Zhang, Minhui Zhuang, Lingxiao Zou, Wei Sun, Ping Han, Xiaofeng Song
2023 J jnl
In-depth characterization and identification of translatable lncRNAs.
Comput. Biol. Medicine
Meng Zhang, Jian Zhao, Jing Wu, Yulan Wang, Minhui Zhuang, Lingxiao Zou, Renlong Mao, Bin Jiang, Jingjing Liu, Xiaofeng Song
2022 J jnl
csORF-finder: an effective ensemble learning framework for accurate identification of multi-species coding short open reading frames.
Briefings Bioinform.
Meng Zhang, Jian Zhao, Chen Li, Fang Ge, Jing Wu, Bin Jiang, Jiangning Song, Xiaofeng Song
2022 J jnl
pHisPred: a tool for the identification of histidine phosphorylation sites by integrating amino acid patterns and properties.
BMC Bioinform.
Jian Zhao, Minhui Zhuang, Jingjing Liu, Meng Zhang, Cong Zeng, Bin Jiang, Jing Wu, Xiaofeng Song
2020 J jnl
IRESbase: A Comprehensive Database of Experimentally Validated Internal Ribosome Entry Sites.
Genom. Proteom. Bioinform.
Jian Zhao, Yan Li, Cong Wang, Haotian Zhang, Hao Zhang, Bin Jiang, Xuejiang Guo, Xiaofeng Song
2019 J jnl
Correction to: circular RNA expression profiles during the differentiation of mouse neural stem cells.
BMC Syst. Biol.
Qichang Yang, Jing Wu, Jian Zhao, Tianyi Xu, Zhongming Zhao, Xiaofeng Song, Ping Han
2017 J jnl
An improved convex and concave index for revealing the exposure degree of atoms in protein 3D structure.
Int. J. Comput. Biol. Drug Des.
Xiao Wang, Jian Zhao, Yujiao Yan, Jingye Qian, Ping Han, Xiaofeng Song