Jian Wang - RankMe

184 papers A* 3B 3Misc 1Journal 104Unranked 73

Year	Rank	Type	Title / Venue / Authors
2026	J	`jnl`	Data Augmentation for Few-Shot Biomedical NER Using ChatGPT. Artif. Intell. Medicine Wenxuan Mu, Di Zhao, Jiana Meng, Peng Chen, Shichang Sun, Yumeng Yang, Jian Wang, Hongfei Lin
2025	—	`conf`	A Unified Biomedical Named Entity Recognition Framework With Large Language Models. BIBM Tengxiao Lv, Ling Luo, Juntao Li, Yanhua Wang, Yuchen Pan, Chao Liu, Yanan Wang, Yan Jiang, Huiyi Lv, Yuanyuan Sun, Jian Wang, Hongfei Lin
2025	J	`jnl`	A Unified Biomedical Named Entity Recognition Framework with Large Language Models. CoRR Tengxiao Lv, Ling Luo, Juntao Li, Yanhua Wang, Yuchen Pan, Chao Liu, Yanan Wang, Yan Jiang, Huiyi Lv, Yuanyuan Sun, Jian Wang, Hongfei Lin
2025	—	`conf`	CAKADE: Improving ADE Detection on Social Media with LLMs via Counterfactual Augmentation and Knowledge-Enhanced Instruction Tuning. BIBM Weiru Fu, Yunzhi Qiu, Ling Luo, Jian Wang, Hongfei Lin
2025	J	`jnl`	CDrugRed: A Chinese Drug Recommendation Dataset for Discharge Medications in Metabolic Diseases. CoRR Juntao Li, Haobin Yuan, Ling Luo, Yan Jiang, Fan Wang, Ping Zhang, Huiyi Lv, Jian Wang, Yuanyuan Sun, Hongfei Lin
2025	—	`conf`	DALE: Semantically Disentangled LoRA Expert Mixture for Depression Detection in Psychiatric Dialogue. BIBM Jian Ding, Dailin Li, Qinyu Han, Tengxiao Lv, Jian Wang, Hongfei Lin, Ling Luo, Yuanyuan Sun
2025	B	`conf`	Disentangling Cross-Modal Interactions for Enhanced Multimodal Emotion Recognition in Conversation. ICMI Jian Ding, Bo Zhang, Dailin Li, Jian Wang, Hongfei Lin
2025	J	`jnl`	Distilling implicit multimodal knowledge into large language models for zero-resource dialogue generation. Inf. Fusion Bo Zhang, Hui Ma, Jian Ding, Jian Wang, Bo Xu, Hongfei Lin
2025	J	`jnl`	Efficient Tuning of Large Language Models for Knowledge-Grounded Dialogue Generation. CoRR Bo Zhang, Hui Ma, Dailin Li, Jian Ding, Jian Wang, Bo Xu, Hongfei Lin
2025	J	`jnl`	Efficient Tuning of Large Language Models for Knowledge-Grounded Dialogue Generation. Trans. Assoc. Comput. Linguistics Bo Zhang, Hui Ma, Dailin Li, Jian Ding, Jian Wang, Bo Xu, Hongfei Lin
2025	J	`jnl`	Empathy Level Alignment via Reinforcement Learning for Empathetic Response Generation. IEEE Trans. Affect. Comput. Hui Ma, Bo Zhang, Bo Xu, Jian Wang, Hongfei Lin, Xiao Sun
2025	J	`jnl`	FocusMed: A Large Language Model-based Framework for Enhancing Medical Question Summarization with Focus Identification. CoRR Chao Liu, Ling Luo, Tengxiao Lv, Huan Zhuang, Lejing Yu, Jian Wang, Hongfei Lin
2025	—	`conf`	NaviPath: A Novel Knowledge Graph-Based RAG Framework for Medical QA. BIBM Zhehuan Zhao, Yuran Zhang, Bo Xu, Ludan Zhang, Yu Liu, Shimin Shan, Jian Wang, Hongfei Lin
2025	J	`jnl`	Overview of CHIP 2025 Shared Task 2: Discharge Medication Recommendation for Metabolic Diseases Based on Chinese Electronic Health Records. CoRR Juntao Li, Haobin Yuan, Ling Luo, Tengxiao Lv, Yan Jiang, Fan Wang, Ping Zhang, Huiyi Lv, Jian Wang, Yuanyuan Sun, Hongfei Lin
2025	—	`conf`	Prototype Tuning: A Meta-Learning Approach for Few-Shot Document-Level Relation Extraction with Large Language Models. NAACL (Findings) Dinghao Pan, Yuanyuan Sun, Bo Xu, Jiru Li, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang
2025	J	`jnl`	Syntax-based residual graph attention network for aspect-level sentiment classification. Knowl. Based Syst. Guangtao Xu, Zhihao Yang, Jinzhong Ning, Hongfei Lin, Jian Wang
2024	J	`jnl`	A Transformer-Based Model With Self-Distillation for Multimodal Emotion Recognition in Conversations. IEEE Trans. Multim. Hui Ma, Jian Wang, Hongfei Lin, Bo Zhang, Yi-Jia Zhang, Bo Xu
2024	—	`conf`	An Improved Method for Phenotype Concept Recognition Using Rich HPO Information. BIBM Jiewei Qi, Ling Luo, Zhihao Yang, Jian Wang, Huiwei Zhou, Hongfei Lin
2024	—	`conf`	Biomedical Document-level Relation Extraction with Coreference and Anaphor Graphs. BIBM Jiru Li, Yuanyuan Sun, Zhihao Yang, Ling Luo, Lei Wang, Wei Liu, Yin Zhang, Bo Xu, Jian Wang, Yumeng Yang, Zhehuan Zhao, Hongfei Lin
2024	—	`conf`	Biomedical Event Extraction as Semantic Segmentation. BIBM Liangyu Gao, Zhihao Yang, Jinzhong Ning, Kai Ma, Lei Wang, Wei Liu, Yin Zhang, Ling Luo, Bo Xu, Jian Wang, Yumeng Yang, Zhehuan Zhao, Yuanyuan Sun, Hongfei Lin
2024	—	`conf`	CFAH: A Chinese Dataset for Detecting False Advertising in Healthcare. BIBM Weiru Fu, Junyu Lu, Youlin Wu, Guangtao Xu, Liang Yang, Hongfei Lin, Jian Wang, Ruiyuan Wang
2024	J	`jnl`	Distilling Implicit Multimodal Knowledge into LLMs for Zero-Resource Dialogue Generation. CoRR Bo Zhang, Hui Ma, Jian Ding, Jian Wang, Bo Xu, Hongfei Lin
2024	—	`conf`	Document Embeddings Enhance Biomedical Retrieval-Augmented Generation. BIBM Yongle Kong, Zhihao Yang, Ling Luo, Zeyuan Ding, Lei Wang, Wei Liu, Yin Zhang, Bo Xu, Jian Wang, Yuanyuan Sun, Zhehuan Zhao, Hongfei Lin
2024	—	`conf`	Document-level Biomedical Relation Extraction Based on Relation-guided Entity-level Graphs. BIBM Liangyu Gao, Zhihao Yang, Haixin Tan, Lei Wang, Wei Liu, Yin Zhang, Ling Luo, Bo Xu, Jian Wang, Yumeng Yang, Zhehuan Zhao, Yuanyuan Sun, Hongfei Lin
2024	—	`conf`	EDNER: Edge Detection for Named Entity Recognition. NLPCC (2) Liangyu Gao, Zhihao Yang, Ling Luo, Wenfei Liu, Hongfei Lin, Jian Wang
2024	—	`conf`	Efficient Knowledge Graph Embedding Framework to Alleviate Data Sparsity for Polypharmacy Side Effects Prediction. BIBM Senbo Tu, Zhihao Yang, Lei Wang, Wei Liu, Yin Zhang, Ling Luo, Bo Xu, Jian Wang, Yumeng Yang, Zhehuan Zhao, Hongfei Lin
2024	J	`jnl`	Empathy Level Alignment via Reinforcement Learning for Empathetic Response Generation. CoRR Hui Ma, Bo Zhang, Bo Xu, Jian Wang, Hongfei Lin, Xiao Sun
2024	—	`conf`	Introducing Structural Information of Argumentative Essays Into Pre-trained Models. NLPCC (5) Chuhan Wang, Dailin Li, Yuzhao Wang, Xuening Qiao, Bo Zhang, Jian Wang
2024	J	`jnl`	JTIS: enhancing biomedical document-level relation extraction through joint training with intermediate steps. Database J. Biol. Databases Curation Jiru Li, Dinghao Pan, Zhihao Yang, Yuanyuan Sun, Hongfei Lin, Jian Wang
2024	J	`jnl`	Learning to explain is a good biomedical few-shot learner. Bioinform. Peng Chen, Jian Wang, Ling Luo, Hongfei Lin, Zhihao Yang
2024	J	`jnl`	Location-enhanced syntactic knowledge for biomedical relation extraction. J. Biomed. Informatics Yan Zhang, Zhihao Yang, Yumeng Yang, Hongfei Lin, Jian Wang
2024	J	`jnl`	Predicting Protein Functions Based on Heterogeneous Graph Attention Technique. IEEE J. Biomed. Health Informatics Yingwen Zhao, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2024	J	`jnl`	Taiyi: a bilingual fine-tuned large language model for diverse biomedical tasks. J. Am. Medical Informatics Assoc. Ling Luo, Jinzhong Ning, Yingwen Zhao, Zhijun Wang, Zeyuan Ding, Peng Chen, Weiru Fu, Qinyu Han, Guangtao Xu, Yunzhi Qiu, Dinghao Pan, Jiru Li, Hao Li, Wenduo Feng, Senbo Tu, Yuqi Liu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Hongfei Lin
2023	—	`conf`	A Model Ensemble Approach for Conversational Quadruple Extraction. NLPCC (3) Zijian Tu, Bo Zhang, Chuchu Jiang, Jian Wang, Hongfei Lin
2023	J	`jnl`	A Self-Supervised Framework for Learning Biological Entities Representation by Fusing Class Information. IEEE J. Biomed. Health Informatics Nan Li, Zhihao Yang, Jian Wang, Hongfei Lin
2023	J	`jnl`	A Transformer-Based Model With Self-Distillation for Multimodal Emotion Recognition in Conversations. CoRR Hui Ma, Jian Wang, Hongfei Lin, Bo Zhang, Yijia Zhang, Bo Xu
2023	J	`jnl`	Automatic International Classification of Diseases Coding via Note-Code Interaction Network with Denoising Mechanism. J. Comput. Biol. Xiaobo Li, Yi-Jia Zhang, Xingwang Li, Xianwei Pan, Jian Wang, Mingyu Lu
2023	J	`jnl`	Biomedical document relation extraction with prompt learning and KNN. J. Biomed. Informatics Di Zhao, Yumeng Yang, Peng Chen, Jiana Meng, Shichang Sun, Jian Wang, Hongfei Lin
2023	J	`jnl`	Few-shot biomedical named entity recognition via knowledge-guided instance generation and prompt contrastive learning. Bioinform. Peng Chen, Jian Wang, Hongfei Lin, Di Zhao, Zhihao Yang
2023	J	`jnl`	Graph augmented sequence-to-sequence model for neural question generation. Appl. Intell. Hui Ma, Jian Wang, Hongfei Lin, Bo Xu
2023	J	`jnl`	Hyperbolic hierarchical knowledge graph embeddings for biological entities. J. Biomed. Informatics Nan Li, Zhihao Yang, Yumeng Yang, Jian Wang, Hongfei Lin
2023	J	`jnl`	Improving Protein Function Prediction by Adaptively Fusing Information From Protein Sequences and Biomedical Literature. IEEE J. Biomed. Health Informatics Yingwen Zhao, Zhihao Yang, Yongkai Hong, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2023	—	`conf`	Joint Biomedical Entity and Relation Extraction Based on Triple Region Vertices. BIBM Yuqi Liu, Zhihao Yang, Jinzhong Ning, Zhijun Wang, Ling Luo, Lei Wang, Yin Zhang, Wei Liu, Hongfei Lin, Jian Wang
2023	—	`conf`	Joint Biomedical Entity and Relation Extraction with Unified Interaction Maps. BIBM Haixin Tan, Zhihao Yang, Zeyuan Ding, Zhijun Wang, Ling Luo, Lei Wang, Yin Zhang, Wei Liu, Hongfei Lin, Jian Wang
2023	J	`jnl`	Knowledge Adaptive Multi-Way Matching Network for Biomedical Named Entity Recognition via Machine Reading Comprehension. IEEE ACM Trans. Comput. Biol. Bioinform. Peng Chen, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang
2023	J	`jnl`	Knowledge Guided Attention and Graph Convolutional Networks for Chemical-Disease Relation Extraction. IEEE ACM Trans. Comput. Biol. Bioinform. Yi Sun, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang
2023	J	`jnl`	Multi-perspective respondent representations for answer ranking in community question answering. Inf. Sci. Lingfei Qian, Jian Wang, Hongfei Lin, Liang Yang
2023	J	`jnl`	Taiyi: A Bilingual Fine-Tuned Large Language Model for Diverse Biomedical Tasks. CoRR Ling Luo, Jinzhong Ning, Yingwen Zhao, Zhijun Wang, Zeyuan Ding, Peng Chen, Weiru Fu, Qinyu Han, Guangtao Xu, Yunzhi Qiu, Dinghao Pan, Jiru Li, Hao Li, Wenduo Feng, Senbo Tu, Yuqi Liu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Hongfei Lin
2023	A*	`conf`	ZRIGF: An Innovative Multimodal Framework for Zero-Resource Image-Grounded Dialogue Generation. ACM Multimedia Bo Zhang, Jian Wang, Hui Ma, Bo Xu, Hongfei Lin
2023	J	`jnl`	ZRIGF: An Innovative Multimodal Framework for Zero-Resource Image-Grounded Dialogue Generation. CoRR Bo Zhang, Jian Wang, Hui Ma, Bo Xu, Hongfei Lin
2022	J	`jnl`	A multi-view network for real-time emotion recognition in conversations. Knowl. Based Syst. Hui Ma, Jian Wang, Hongfei Lin, Xuejun Pan, Yijia Zhang, Zhihao Yang
2022	—	`conf`	Adaptive Multi-view Graph Convolutional Network for Gene Ontology Annotations of Proteins. BIBM Yingwen Zhao, Zhihao Yang, Yongkai Hong, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2022	—	`conf`	BioNER-CFEM: Biomedical Named Entity Recognition Based on Character Feature Enhancement with Multimodal Method. BIBM Jinzhong Ning, Jiru Li, Zhihao Yang, Yuanyuan Sun, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2022	J	`jnl`	Dependency multi-weight-view graphs for event detection with label co-occurrence. Inf. Sci. Yan Wang, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang
2022	J	`jnl`	Exploiting Pairwise Mutual Information for Knowledge-Grounded Dialogue. IEEE ACM Trans. Audio Speech Lang. Process. Bo Zhang, Jian Wang, Hongfei Lin, Hui Ma, Bo Xu
2022	J	`jnl`	Global and local interaction matching model for knowledge-grounded response selection in retrieval-based chatbots. Neurocomputing Hui Ma, Jian Wang, Hongfei Lin, Liang Yang
2022	J	`jnl`	Heterogeneous information network embedding based on multiperspective metapath for question routing. Knowl. Based Syst. Lingfei Qian, Jian Wang, Hongfei Lin, Bo Xu, Liang Yang
2022	—	`conf`	Knowledge-Enhanced Dual Graph Neural Network for Robust Medicine Recommendation. BIBM Xingwang Li, Yijia Zhang, Jian Wang, Mingyu Lu, Hongfei Lin
2022	—	`conf`	Location-Guided Token Pair Tagger for Joint Biomedical Entity and Relation Extraction. BIBM Yan Zhang, Jiru Li, Zhihao Yang, Hongfei Lin, Jian Wang
2022	J	`jnl`	MRC4BioER: Joint extraction of biomedical entities and relations in the machine reading comprehension framework. J. Biomed. Informatics Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2022	J	`jnl`	Manifold biomedical text sentence embedding. Neurocomputing Bolin Wang, Yuanyuan Sun, Yonghe Chu, Hongfei Lin, Di Zhao, Liang Yang, Chen Shen, Zhihao Yang, Jian Wang
2022	J	`jnl`	Multi-hop interactive attention based classification network for expert recommendation. Neurocomputing Lingfei Qian, Jian Wang, Hongfei Lin, Liang Yang, Yu Zhang
2022	—	`conf`	NIDN: Medical Code Assignment via Note-Code Interaction Denoising Network. ISBRA Xiaobo Li, Yijia Zhang, Xingwang Li, Jian Wang, Mingyu Lu
2022	—	`conf`	Patient Condition Change Network for Safe Medication Recommendation. BIBM Ruobing Li, Jian Wang, Hongfei Lin, Yuan Lin, Huiyi Lu, Zhihao Yang
2022	B	`conf`	RealMedDial: A Real Telemedical Dialogue Dataset Collected from Online Chinese Short-Video Clips. COLING Bo Xu, Hongtong Zhang, Jian Wang, Xiaokun Zhang, Dezhi Hao, Linlin Zong, Hongfei Lin, Fenglong Ma
2022	J	`jnl`	Refining electronic medical records representation in manifold subspace. BMC Bioinform. Bolin Wang, Yuanyuan Sun, Yonghe Chu, Di Zhao, Zhihao Yang, Jian Wang
2022	—	`conf`	Syntactic Type-aware Graph Attention Network for Drug-drug Interactions and their Adverse Effects Extraction. BIBM Peng Chen, Jian Wang, Hongfei Lin, Yichen Wang, Di Zhao, Yijia Zhang
2022	B	`conf`	Two Languages Are Better than One: Bilingual Enhancement for Chinese Named Entity Recognition. COLING Jinzhong Ning, Zhihao Yang, Zhizheng Wang, Yuanyuan Sun, Hongfei Lin, Jian Wang
2021	J	`jnl`	Adversarial neural network with sentiment-aware attention for detecting adverse drug reactions. J. Biomed. Informatics Tongxuan Zhang, Hongfei Lin, Bo Xu, Liang Yang, Jian Wang, Xiaodong Duan
2021	J	`jnl`	Adversarial transfer network with bilinear attention for the detection of adverse drug reactions from social media. Appl. Soft Comput. Tongxuan Zhang, Hongfei Lin, Yuqi Ren, Zhihao Yang, Jian Wang, Shaowu Zhang, Bo Xu, Xiaodong Duan
2021	—	`conf`	Auto-learning Convolution-Based Graph Convolutional Network for Medical Relation Extraction. CCIR Mengyuan Qian, Jian Wang, Hongfei Lin, Di Zhao, Yijia Zhang, Wentai Tang, Zhihao Yang
2021	J	`jnl`	Biomedical cross-sentence relation extraction via multihead attention and graph convolutional networks. Appl. Soft Comput. Di Zhao, Jian Wang, Hongfei Lin, Xin Wang, Zhihao Yang, Yijia Zhang
2021	J	`jnl`	Biomedical named entity recognition using BERT in the machine reading comprehension framework. J. Biomed. Informatics Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2021	—	`conf`	Co-Attentive Span Network with Multi-task learning for Biomedical Named Entity Recognition. BIBM Peng Chen, Jian Wang, Hongfei Lin, Yijia Zhang, Zhihao Yang, Di Zhao, Hui Ma
2021	J	`jnl`	Deep learning with language models improves named entity recognition for PharmaCoNER. BMC Bioinform. Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2021	A*	`conf`	Focus on Interaction: A Novel Dynamic Graph Model for Joint Multiple Intent Detection and Slot Filling. IJCAI Zeyuan Ding, Zhihao Yang, Hongfei Lin, Jian Wang
2021	J	`jnl`	HAN-ReGRU: hierarchical attention network with residual gated recurrent unit for emotion recognition in conversation. Neural Comput. Appl. Hui Ma, Jian Wang, Lingfei Qian, Hongfei Lin
2021	J	`jnl`	Hierarchical matching network for multi-turn response selection in retrieval-based chatbots. Soft Comput. Hui Ma, Jian Wang, Hongfei Lin, Yi-Jia Zhang
2021	J	`jnl`	Identifying adverse drug reaction entities from social media with adversarial transfer learning model. Neurocomputing Tongxuan Zhang, Hongfei Lin, Yuqi Ren, Zhihao Yang, Jian Wang, Xiaodong Duan, Bo Xu
2021	J	`jnl`	Improving biomedical word representation with locally linear embedding. Neurocomputing Di Zhao, Jian Wang, Yonghe Chu, Yijia Zhang, Zhihao Yang, Hongfei Lin
2021	J	`jnl`	Lexicon Knowledge Boosted Interaction Graph Network for Adverse Drug Reaction Recognition From Social Media. IEEE J. Biomed. Health Informatics Zhiheng Li, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2021	J	`jnl`	Medical code prediction via capsule networks and ICD knowledge. BMC Medical Informatics Decis. Mak. Weidong Bao, Hongfei Lin, Yi-Jia Zhang, Jian Wang, Shaowu Zhang
2021	—	`conf`	Self-Supervised Learning with Heterogeneous Graph Neural Network for COVID-19 Drug Recommendation. BIBM Haifeng Liu, Hongfei Lin, Chen Shen, Zhihao Yang, Jian Wang, Liang Yang
2021	J	`jnl`	Sentence representation with manifold learning for biomedical texts. Knowl. Based Syst. Di Zhao, Jian Wang, Hongfei Lin, Yonghe Chu, Yan Wang, Yi-Jia Zhang, Zhihao Yang
2021	—	`conf`	TL-BERT: A Novel Biomedical Relation Extraction Approach. BIBM Zhehuan Zhao, Yuying Zou, Yang Tian, Bo Xu, Zhihao Yang, Jian Wang, Hongfei Lin, Shimin Shan, Yu Liu
2020	J	`jnl`	Attention guided capsule networks for chemical-protein interaction extraction. J. Biomed. Informatics Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2020	J	`jnl`	Biomedical document triage using a hierarchical attention-based capsule network. BMC Bioinform. Jian Wang, Mengying Li, Qishuai Diao, Hongfei Lin, Zhihao Yang, Yi-Jia Zhang
2020	J	`jnl`	Biomedical named entity recognition using BERT in the machine reading comprehension framework. CoRR Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2020	J	`jnl`	Chemical-protein interaction extraction via Gaussian probability distribution and external biomedical knowledge. Bioinform. Cong Sun, Zhihao Yang, Leilei Su, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2020	—	`conf`	Cross2Self-attentive Bidirectional Recurrent Neural Network with BERT for Biomedical Semantic Text Similarity. BIBM Zhengguang Li, Hongfei Lin, Chen Shen, Wei Zheng, Zhihao Yang, Jian Wang
2020	—	`conf`	Drug Repositioning for SARS-CoV-2 Based on Graph Neural Network. BIBM Haifeng Liu, Hongfei Lin, Chen Shen, Liang Yang, Yuan Lin, Bo Xu, Zhihao Yang, Jian Wang, Yuanyuan Sun
2020	—	`conf`	Extracting Protein-Protein Interactions Affected by Mutations via Auxiliary Task and Domain Pre-trained Model. BIBM Yu Wang, Shaowu Zhang, Yijia Zhang, Jian Wang, Hongfei Lin
2020	—	`conf`	Extracting biomedical relations via a multi-head attention based graph convolutional network. BIBM Erniu Wang, Fan Wang, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2020	J	`jnl`	FBSN: A hybrid fine-grained neural network for biomedical event trigger identification. Neurocomputing Yufeng Diao, Hongfei Lin, Liang Yang, Xiaochao Fan, Di Wu, Zhihao Yang, Jian Wang, Kan Xu
2020	—	`conf`	Gated iterative capsule network for adverse drug reaction detection from social media. BIBM Tongxuan Zhang, Hongfei Lin, Bo Xu, Yuqi Ren, Zhihao Yang, Jian Wang, Xiaodong Duan
2020	J	`jnl`	Incorporating representation learning and multihead attention to improve biomedical cross-sentence n-ary relation extraction. BMC Bioinform. Di Zhao, Jian Wang, Yi-Jia Zhang, Xin Wang, Hongfei Lin, Zhihao Yang
2020	J	`jnl`	Interactive Self-Attentive Siamese Network for Biomedical Sentence Similarity. IEEE Access Zhengguang Li, Hongfei Lin, Wei Zheng, Michael M. Tadesse, Zhihao Yang, Jian Wang
2020	J	`jnl`	KGHC: a knowledge graph for hepatocellular carcinoma. BMC Medical Informatics Decis. Mak. Nan Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2020	—	`conf`	Star-BiLSTM-LAN for Document-level Mutation-Disease Relation Extraction from Biomedical Literature. BIBM Yuan Xu, Zhihao Yang, Yawen Song, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2019	J	`jnl`	A Deep Learning Approach With Deep Contextualized Word Representations for Chemical-Protein Interaction Extraction From Biomedical Literature. IEEE Access Cong Sun, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2019	J	`jnl`	A supervised term ranking model for diversity enhanced biomedical information retrieval. BMC Bioinform. Bo Xu, Hongfei Lin, Liang Yang, Kan Xu, Yi-Jia Zhang, Dongyu Zhang, Zhihao Yang, Jian Wang, Yuan Lin, Fuliang Yin
2019	J	`jnl`	Adverse drug reaction detection via a multihop self-attention mechanism. BMC Bioinform. Tongxuan Zhang, Hongfei Lin, Yuqi Ren, Liang Yang, Bo Xu, Zhihao Yang, Jian Wang, Yijia Zhang
2019	—	`conf`	Bi-directional Capsule Network Model for Chinese Biomedical Community Question Answering. NLPCC (1) Tongxuan Zhang, Yuqi Ren, Michael Mesfin Tadessem, Bo Xu, Xikai Liu, Liang Yang, Zhihao Yang, Jian Wang, Hongfei Lin
2019	J	`jnl`	Biomedical event trigger detection with convolutional highway neural network and extreme learning machine. Appl. Soft Comput. Chen Shen, Hongfei Lin, Xiaochao Fan, Yonghe Chu, Zhihao Yang, Jian Wang, Shaowu Zhang
2019	J	`jnl`	Chemical-protein Interaction Extraction via Gaussian Probability Distribution and External Biomedical Knowledge. CoRR Cong Sun, Zhihao Yang, Leilei Su, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2019	J	`jnl`	Chemical-protein interaction extraction from biomedical literature: a hierarchical recurrent convolutional neural network method. Int. J. Data Min. Bioinform. Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
2019	J	`jnl`	Chemical-protein interaction extraction via contextualized word representations and multihead attention. Database J. Biol. Databases Curation Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yuanyuan Sun
2019	—	`conf`	DUTIR at TREC 2019: Precision Medicine Track. TREC Jingkun Feng, Zhihao Yang, Zhiqiang Liu, Ling Luo, Hongfei Lin, Jian Wang
2019	J	`jnl`	Detecting adverse drug reactions from social media based on multi-channel convolutional neural networks. Neural Comput. Appl. Chen Shen, Hongfei Lin, Kai Guo, Kan Xu, Zhihao Yang, Jian Wang
2019	J	`jnl`	Detection of protein complexes from multiple protein interaction networks using graph embedding. Artif. Intell. Medicine Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Hongfei Lin, Jian Wang, Bo Xu
2019	—	`conf`	Disease Gene Prediction Based on Heterogeneous Probabilistic Hypergraph Ranking. BIBM Feng Ding, Xiangjie Kong, Zhehuan Zhao, Feng Xia, Anfu Liu, Chenxu Bai, Bo Xu, Xiaoxia Liu, Shengtian Sang, Hongfei Lin, Zhihao Yang, Jian Wang
2019	J	`jnl`	Extracting drug-drug interactions with hybrid bidirectional gated recurrent unit and graph convolutional network. J. Biomed. Informatics Di Zhao, Jian Wang, Hongfei Lin, Zhihao Yang, Yijia Zhang
2019	J	`jnl`	GrEDeL: A Knowledge Graph Embedding Based Method for Drug Discovery From Biomedical Literatures. IEEE Access Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Hongfei Lin, Jian Wang, Michel Dumontier
2019	J	`jnl`	Improving User Attribute Classification with Text and Social Network Attention. Cogn. Comput. Yumeng Li, Liang Yang, Bo Xu, Jian Wang, Hongfei Lin
2019	J	`jnl`	Intelligent multi-document summarization for biomedical literature by word embeddings and graph-based ranking. J. Intell. Fuzzy Syst. Chen Shen, Hongfei Lin, Huihui Hao, Zhihao Yang, Jian Wang, Shaowu Zhang
2019	J	`jnl`	KeSACNN: a protein-protein interaction article classification approach based on deep neural network. Int. J. Data Min. Bioinform. Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2019	J	`jnl`	Neural network-based approaches for biomedical relation classification: A review. J. Biomed. Informatics Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yuanyuan Sun, Bo Xu, Zhehuan Zhao
2019	J	`jnl`	Relation path feature embedding based convolutional neural network method for drug discovery. BMC Medical Informatics Decis. Mak. Di Zhao, Jian Wang, Shengtian Sang, Hongfei Lin, Jiabin Wen, Chunmei Yang
2019	Misc	`conf`	Residual Connected Enhanced Sequential Inference Model for Natural Language Inference. ISKE Yingdong Li, Jian Wang, Hongfei Lin, Shaowu Zhang, Zhihao Yang
2018	—	`conf`	A Knowledge Graph based Bidirectional Recurrent Neural Network Method for Literature-based Discovery. BIBM Shengtian Sang, Zhihao Yang, Xiaoxia Liu, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
2018	—	`conf`	A Normalized Encoder-Decoder Model for Abstractive Summarization Using Focal Loss. NLPCC (2) Yunsheng Shi, Jun Meng, Jian Wang, Hongfei Lin, Yumeng Li
2018	J	`jnl`	A hybrid model based on neural networks for biomedical relation extraction. J. Biomed. Informatics Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Shaowu Zhang, Yuanyuan Sun, Liang Yang
2018	—	`conf`	A multi-task learning based approach to biomedical entity relation extraction. BIBM Qingqing Li, Zhihao Yang, Ling Luo, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
2018	J	`jnl`	A neural network approach to chemical and gene/protein entity recognition in patents. J. Cheminformatics Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Jian Wang, Hongfei Lin
2018	J	`jnl`	An attention-based BiLSTM-CRF approach to document-level chemical named entity recognition. Bioinform. Ling Luo, Zhihao Yang, Pei Yang, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang
2018	J	`jnl`	An effective neural model extracting document level chemical-induced disease relations from biomedical literature. J. Biomed. Informatics Wei Zheng, Hongfei Lin, Zhiheng Li, Xiaoxia Liu, Zhengguang Li, Bo Xu, Yijia Zhang, Zhihao Yang, Jian Wang
2018	J	`jnl`	Bidirectional long short-term memory with CRF for detecting biomedical event trigger in FastText semantic space. BMC Bioinform. Yan Wang, Jian Wang, Hongfei Lin, Xiwei Tang, Shaowu Zhang, Lishuang Li
2018	J	`jnl`	Biomedical event extraction based on GRU integrating attention mechanism. BMC Bioinform. Lishuang Li, Jia Wan, Jieqiong Zheng, Jian Wang
2018	—	`conf`	Chinese Emotion Commonsense Knowledge Base Construction and Its Application. CLSW Liang Yang, Fengqing Zhou, Hongfei Lin, Jian Wang, Shaowu Zhang
2018	J	`jnl`	Document triage for identifying protein-protein interactions affected by mutations: a neural network ensemble approach. Database J. Biol. Databases Curation Ling Luo, Zhihao Yang, Hongfei Lin, Jian Wang
2018	J	`jnl`	Drug-drug interaction extraction via hierarchical RNNs on sequence and shortest dependency paths. Bioinform. Yijia Zhang, Wei Zheng, Hongfei Lin, Jian Wang, Zhihao Yang, Michel Dumontier
2018	J	`jnl`	Exploring Answer Information for Question Classification in Community Question Answering. J. Multiple Valued Log. Soft Comput. Jian Wang, Hongfei Lin, Hualei Dong, Daping Xiong, Zhihao Yang
2018	—	`conf`	Full-attention Based Drug Drug Interaction Extraction Exploiting User-generated Content. BIBM Bo Xu, Xiufeng Shi, Zhehuan Zhao, Wei Zheng, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia
2018	—	`conf`	HMNPPID: A Database of Protein-protein Interactions Associated with Human Malignant Neoplasms. BIBM Qingqing Li, Zhihao Yang, Zhehuan Zhao, Ling Luo, Zhiheng Li, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Yijia Zhang
2018	—	`conf`	Hierarchical Recurrent Convolutional Neural Network for Chemical-protein Relation Extraction from Biomedical Literature. BIBM Cong Sun, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
2018	J	`jnl`	Identifying protein complexes based on node embeddings obtained from protein-protein interaction networks. BMC Bioinform. Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Ziwei Zhou, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Bo Xu
2018	J	`jnl`	Improve Biomedical Information Retrieval Using Modified Learning to Rank Methods. IEEE ACM Trans. Comput. Biol. Bioinform. Bo Xu, Hongfei Lin, Yuan Lin, Yunlong Ma, Liang Yang, Jian Wang, Zhihao Yang
2018	—	`conf`	Improve Diversity-oriented Biomedical Information Retrieval using Supervised Query Expansion. BIBM Bo Xu, Hongfei Lin, Liang Yang, Kan Xu, Yijia Zhang, Dongyu Zhang, Zhihao Yang, Jian Wang, Yuan Lin, Fuliang Yin
2018	—	`conf`	Multipath2vec: Predicting Pathogenic Genes via Heterogeneous Network Embedding. BIBM Bo Xu, Yu Liu, Shuo Yu, Lei Wang, Lei Liu, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia
2018	—	`conf`	NLPCC 2018 Shared Task User Profiling and Recommendation Method Summary by DUTIR_9148. NLPCC (2) Xiaoyu Chen, Jian Wang, Yuqi Ren, Tong Liu, Hongfei Lin
2018	—	`conf`	PC-SENE: A node embedding based method for protein complex detection. BIBM Xiaoxia Liu, Zhihao Yang, Shengtian Sang, Lei Wang, Yin Zhang, Hongfei Lin, Bo Xu, Yijia Zhang, Liang Yang, Kan Xu, Jian Wang
2018	—	`conf`	Protein Complexes Detection Based on Global Network Representation Learning. BIBM Bo Xu, Kun Li, Xiaoxia Liu, Delong Liu, Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Feng Xia
2018	—	`conf`	Protein-Protein Interaction Article Classification: A Knowledge-enriched Self-Attention Convolutional Neural Network Approach. BIBM Ling Luo, Zhihao Yang, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang, Liang Yang, Kan Xu, Yijia Zhang
2018	J	`jnl`	SemaTyP: a knowledge graph based literature mining method for drug discovery. BMC Bioinform. Shengtian Sang, Zhihao Yang, Lei Wang, Xiaoxia Liu, Hongfei Lin, Jian Wang
2018	A*	`conf`	WECA：A WordNet-Encoded Collocation-Attention Network for Homographic Pun Recognition. EMNLP Yufeng Diao, Hongfei Lin, Di Wu, Liang Yang, Kan Xu, Zhihao Yang, Jian Wang, Shaowu Zhang, Bo Xu, Dongyu Zhang
2017	J	`jnl`	A multiple distributed representation method based on neural network for biomedical event extraction. BMC Medical Informatics Decis. Mak. Anran Wang, Jian Wang, Hongfei Lin, Jianhai Zhang, Zhihao Yang, Kan Xu
2017	J	`jnl`	An attention-based effective neural model for drug-drug interactions extraction. BMC Bioinform. Wei Zheng, Hongfei Lin, Ling Luo, Zhehuan Zhao, Zhengguang Li, Yijia Zhang, Zhihao Yang, Jian Wang
2017	—	`conf`	Biomedical event trigger detection based on bidirectional LSTM and CRF. BIBM Yan Wang, Jian Wang, Hongfei Lin, Shaowu Zhang, Lishuang Li
2017	J	`jnl`	Convolutional neural networks for expert recommendation in community question answering. Sci. China Inf. Sci. Jian Wang, Jiqing Sun, Hongfei Lin, Hualei Dong, Shaowu Zhang
2017	—	`conf`	Detecting Potential Adverse Drug Reactions Using Association Rules and Embedding Models. ISBRA Kai Guo, Hongfei Lin, Bo Xu, Zhihao Yang, Jian Wang, Yuanyuan Sun, Kan Xu
2017	—	`conf`	First Place Solution for NLPCC 2017 Shared Task Social Media User Modeling. NLPCC Lingfei Qian, Anran Wang, Yan Wang, Yuhang Huang, Jian Wang, Hongfei Lin
2016	J	`jnl`	A graph kernel based on context vectors for extracting drug-drug interactions. J. Biomed. Informatics Wei Zheng, Hongfei Lin, Zhehuan Zhao, Bo Xu, Yijia Zhang, Zhihao Yang, Jian Wang
2016	J	`jnl`	A method for predicting protein complex in dynamic PPI networks. BMC Bioinform. Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yiwei Liu, Shengtian Sang
2016	J	`jnl`	A protein-protein interaction extraction approach based on deep neural network. Int. J. Data Min. Bioinform. Zhehuan Zhao, Zhihao Yang, Hongfei Lin, Jian Wang, Song Gao
2016	—	`conf`	Biomedical event extraction based on distributed representation and deep learning. BIBM Anran Wang, Jian Wang, Hongfei Lin, Jianhai Zhang, Zhihao Yang, Kan Xu
2016	J	`jnl`	Biomedical event trigger detection based on convolutional neural network. Int. J. Data Min. Bioinform. Jian Wang, Honglei Li, Yuan An, Hongfei Lin, Zhihao Yang
2016	—	`conf`	CIDExtractor: A chemical-induced disease relation extraction system for biomedical literature. BIBM Zhiheng Li, Zhihao Yang, Hongfei Lin, Jian Wang, Yingyi Gui, Yin Zhang, Lei Wang
2016	J	`jnl`	Construction of dynamic probabilistic protein interaction networks for protein complex identification. BMC Bioinform. Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang
2016	—	`conf`	DUTIR in BioNLP-ST 2016: Utilizing Convolutional Network and Distributed Representation to Extract Complicate Relations. BioNLP (Shared Task) Honglei Li, Jianhai Zhang, Jian Wang, Hongfei Lin, Zhihao Yang
2016	—	`conf`	Detecting Potential Adverse Drug Reactions from Health-Related Social Networks. NLPCC/ICCPOL Bo Xu, Hongfei Lin, Mingzhen Zhao, Zhihao Yang, Jian Wang, Shaowu Zhang
2016	—	`conf`	Disease-specific protein complex detection in the human protein interaction network with a supervised learning method. BIBM Ziwei Zhou, Yingyi Gui, Zhihao Yang, Xiaoxia Liu, Lei Wang, Yin Zhang, Hongfei Lin, Jian Wang
2016	J	`jnl`	Drug drug interaction extraction from biomedical literature using syntax convolutional neural network. Bioinform. Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang
2016	—	`conf`	Generating User-oriented Text Summarization Based on Social Networks Using Topic Models. SMP Bo Xu, Hongfei Lin, Huihui Hao, Zhihao Yang, Jian Wang, Shaowu Zhang
2016	—	`conf`	ML-CNN: A novel deep learning based disease named entity recognition architecture. BIBM Zhehuan Zhao, Zhihao Yang, Ling Luo, Yin Zhang, Lei Wang, Hongfei Lin, Jian Wang
2016	—	`conf`	Predicting Best Answerers for New Questions: An Approach Leveraging Convolution Neural Networks in Community Question Answering. SMP Jian Wang, Jiqing Sun, Hongfei Lin, Hualei Dong, Shaowu Zhang
2015	—	`conf`	Biomedical event trigger detection by dependency-based word embedding. BIBM Jian Wang, Jianhai Zhang, Yuan An, Hongfei Lin, Zhihao Yang, Yijia Zhang, Yuanyuan Sun
2015	—	`conf`	Deep neural network based protein-protein interaction extraction from biomedical literature. BIBM Zhehuan Zhao, Zhihao Yang, Ling Luo, Hongfei Lin, Jian Wang, Song Gao
2015	—	`conf`	Discover potential adverse drug reactions using the skip-gram model. BIBM Mingzhen Zhao, Bo Xu, Hongfei Lin, Zhihao Yang, Jian Wang
2015	J	`jnl`	Integrating experimental and literature protein-protein interaction data for protein complex prediction. BMC Genom. Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang
2015	—	`conf`	Learning to rank for biomedical information retrieval. BIBM Bo Xu, Hongfei Lin, Yuan Lin, Yunlong Ma, Liang Yang, Jian Wang, Zhihao Yang
2015	—	`conf`	Predicting Best Answerers for New Questions: An Approach Leveraging Distributed Representations of Words in Community Question Answering. FCST Hualei Dong, Jian Wang, Hongfei Lin, Bo Xu, Zhihao Yang
2015	J	`jnl`	Protein complex detection in PPI networks based on data integration and supervised learning method. BMC Bioinform. Fengying Yu, Zhihao Yang, Xiaohua Hu, Yuanyuan Sun, Hongfei Lin, Jian Wang
2014	—	`conf`	Data integration and supervised learning based protein complex detection method. BIBM Fengying Yu, Zhihao Yang, Xiaohua Hu, Yuanyuan Sun, Hongfei Lin, Jian Wang
2014	—	`conf`	Deep graph search based disease related knowledge summarization from biomedical literature. BIBM Xiaofang Wu, Zhihao Yang, Zhiheng Li, Yuanyuan Sun, Hongfei Lin, Jian Wang
2014	J	`jnl`	Enhancing the accuracy of knowledge discovery: a supervised learning method. BMC Bioinform. Liangxi Cheng, Hongfei Lin, Feng Zhou, Zhihao Yang, Jian Wang
2014	—	`conf`	Exploring the relation between the characteristics of protein interaction networks and the performances of computational complex detection methods. BIBM Xiaoxia Liu, Zhihao Yang, Ziwei Zhou, Yuanyuan Sun, Hongfei Lin, Jian Wang
2014	J	`jnl`	Predicting protein complex in protein interaction network - a supervised learning based method. BMC Syst. Biol. Feng Yu, Zhi-Hao Yang, Nan Tang, Hong Lin, Jian Wang, Zhiwei Yang
2013	J	`jnl`	Exploring Useful Features for Biomedical Event Trigger Detection. J. Multiple Valued Log. Soft Comput. Jian Wang, Qian Xu, Hongfei Lin, Zhihao Yang, Yanpeng Li
2013	—	`conf`	Integrating multiple biomedical resources for protein complex prediction. BIBM Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Bo Xu
2013	—	`conf`	Predicting protein complexes in protein interaction networks: A supervised learning based method. BIBM Fengying Yu, Zhihao Yang, Nan Tang, Jiajin Wu, Hongfei Lin, Jian Wang
2013	J	`jnl`	Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks. IEEE ACM Trans. Comput. Biol. Bioinform. Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yanpeng Li, Bo Xu
2012	—	`conf`	Combining labeled and unlabeled data for biomédical event extraction. BIBM Workshops Jian Wang, Qian Xu, Hongfei Lin, Zhihao Yang, Yanpeng Li
2012	J	`jnl`	Hash Subgraph Pairwise Kernel for Protein-Protein Interaction Extraction. IEEE ACM Trans. Comput. Biol. Bioinform. Yijia Zhang, Hongfei Lin, Zhihao Yang, Jian Wang, Yanpeng Li
2011	—	`conf`	Identifying Protein Complexes from PPI Networks Using GO Semantic Similarity. BIBM Jian Wang, Dong Xie, Hongfei Lin, Zhihao Yang, Yijia Zhang