Jian Ren

26 papers Journal 26
YearRankTypeTitle / Venue / Authors
2026 J jnl
CMAtlas: a comprehensive DNA methylation atlas for exploring epigenetic alterations in 34 human cancer types.
Bioinform.
Mengni Liu, Lizhen Jiang, Luowanyue Zhang, Tianjian Chen, Xingzhe Wang, Yuan Liang, Xianping Shi, Jian Ren, Yueyuan Zheng
2024 J jnl
AStruct: detection of allele-specific RNA secondary structure in structuromic probing data.
BMC Bioinform.
Qingru Xu, Xiaoqiong Bao, Zhuobin Lin, Lin Tang, Li-na He, Jian Ren, Zhixiang Zuo, Kunhua Hu
2023 J jnl
RM2Target: a comprehensive database for targets of writers, erasers and readers of RNA modifications.
Nucleic Acids Res.
Xiaoqiong Bao, Yin Zhang, Huiqin Li, Yuyan Teng, Lixia Ma, Zhihang Chen, Xiaotong Luo, Jian Zheng, An Zhao, Jian Ren, Zhixiang Zuo
2023 J jnl
TIGER: A Web Portal of Tumor Immunotherapy Gene Expression Resource.
Genom. Proteom. Bioinform.
Zhihang Chen, Ziwei Luo, Di Zhang, Huiqin Li, Xuefei Liu, Kaiyu Zhu, Hongwan Zhang, Zongping Wang, Penghui Zhou, Jian Ren, An Zhao, Zhixiang Zuo
2022 J jnl
IBS 2.0: an upgraded illustrator for the visualization of biological sequences.
Nucleic Acids Res.
Yubin Xie, Huiqin Li, Xiaotong Luo, Hongyu Li, Qiuyuan Gao, Luowanyue Zhang, Yuyan Teng, Qi Zhao, Zhixiang Zuo, Jian Ren
2022 J jnl
MeRIPseqPipe: an integrated analysis pipeline for MeRIP-seq data based on Nextflow.
Bioinform.
Xiaoqiong Bao, Kaiyu Zhu, Xuefei Liu, Zhihang Chen, Ziwei Luo, Qi Zhao, Jian Ren, Zhixiang Zuo
2022 J jnl
RPS: a comprehensive database of RNAs involved in liquid-liquid phase separation.
Nucleic Acids Res.
Mengni Liu, Huiqin Li, Xiaotong Luo, Jieyi Cai, Tianjian Chen, Yubin Xie, Jian Ren, Zhixiang Zuo
2022 J jnl
SPENCER: a comprehensive database for small peptides encoded by noncoding RNAs in cancer patients.
Nucleic Acids Res.
Xiaotong Luo, Yuantai Huang, Huiqin Li, Yihai Luo, Zhixiang Zuo, Jian Ren, Yubin Xie
2022 J jnl
TIRSF: a web server for screening gene signatures to predict Tumor immunotherapy response.
Nucleic Acids Res.
Li Chen, Tianjian Chen, Ya Zhang, Haichen Lin, Ruihan Wang, Yihang Wang, Hongyu Li, Zhixiang Zuo, Jian Ren, Yubin Xie
2021 J jnl
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.
Nucleic Acids Res.
Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Zheng Gong, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Tao Zhang, Wang Kang, Fei Yang, Jing Qu, Weiqi Zhang, Guanghui Liu, Lin Liu, Yang Zhang, Guangyi Niu, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Zhao Li, Ruru Chen, Qianpeng Li, Zhongyi Hua, Chao Jiang, Ziyuan Chen, Fangshu He, Yuyang Zhao, Yan Jin, Luqi Huang, Yuan Yuan, Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Qiang Du, Wenting Zong, Hongen Kang, Zhuang Xiong, Wendi Huan, Sirui Zhang, Qiguang Xia, Xiaojuan Fan, Zefeng Wang, Xu Chen, Tingting Chen, Sisi Zhang, Bixia Tang, Lili Dong, Zhewen Zhang, Zhonghuang Wang, Hailong Kang, Yanqing Wang, Song Wu, Ming Chen, Chang Liu, Yujia Xiong, Xueying Shao, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, LiLi Zhang, Huaxia Luo, Yajing Hao, Peng Zhang, Zhi Nie, Shuhuan Yu, Jian Sang, Zhaohua Li, Xiangquan Zhang, Qing Zhou, Shuang Zhai, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Jun Yan, Chen Li, Zhennan Wang, Xiangfeng Wang, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Hai-Chun Jing, Lianhe Zhao, Jiajia Wang, Tinrui Song, Yi Zhao, Furrukh Mehmood, Shahid Ali, Amjad Ali, Shoaib Saleem, Irfan Hussain, Amir Ali Abbasi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Yiran Tu, Yu Xue, Wanying Wu, Peifeng Ji, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Wanshan Ning, Shaofeng Lin, Teng Liu, An-Yuan Guo, Hao Yuan, Yong E. Zhang, Xiaodan Tan, Weizhi Zhang, Yubin Xie, Chenwei Wang, Chun-Jie Liu, De-Chang Yang, Feng Tian, Ge Gao, Dachao Tang, Lan Yao, Qinghua Cui, Ni A. An, Chuan-Yun Li, Xiaotong Luo
2021 J jnl
RMVar: an updated database of functional variants involved in RNA modifications.
Nucleic Acids Res.
Xiaotong Luo, Huiqin Li, Jiaqi Liang, Qi Zhao, Yubin Xie, Jian Ren, Zhixiang Zuo
2020 J jnl
BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers.
Nucleic Acids Res.
Zhixiang Zuo, Huanjing Hu, Qingxian Xu, Xiaotong Luo, Di Peng, Kaiyu Zhu, Qi Zhao, Yubin Xie, Jian Ren
2020 J jnl
CrossICC: iterative consensus clustering of cross-platform gene expression data without adjusting batch effect.
Briefings Bioinform.
Qi Zhao, Yu Sun, Zekun Liu, Hongwan Zhang, Xingyang Li, Kaiyu Zhu, Zexian Liu, Jian Ren, Zhixiang Zuo
2018 J jnl
DeepNitro: Prediction of Protein Nitration and Nitrosylation Sites by Deep Learning.
Genom. Proteom. Bioinform.
Yubin Xie, Xiaotong Luo, Yupeng Li, Li Chen, Wenbin Ma, Junjiu Huang, Jun Cui, Yong Zhao, Yu Xue, Zhixiang Zuo, Jian Ren
2018 J jnl
m6AVar: a database of functional variants involved in m6A modification.
Nucleic Acids Res.
Yueyuan Zheng, Peng Nie, Di Peng, Zhihao He, Mengni Liu, Yubin Xie, Yanyan Miao, Zhixiang Zuo, Jian Ren
2016 J jnl
RPFdb: a database for genome wide information of translated mRNA generated from ribosome profiling.
Nucleic Acids Res.
Shang-Qian Xie, Peng Nie, Yan Wang, Hongwei Wang, Hongyu Li, Zhilong Yang, Yizhi Liu, Jian Ren, Zhi Xie
2015 J jnl
IBS: an illustrator for the presentation and visualization of biological sequences.
Bioinform.
Wenzhong Liu, Yubin Xie, Jiyong Ma, Xiaotong Luo, Peng Nie, Zhixiang Zuo, Urs Lahrmann, Qi Zhao, Yueyuan Zheng, Yong Zhao, Yu Xue, Jian Ren
2015 J jnl
MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle.
Nucleic Acids Res.
Zhengnan Huang, Lili Ma, Yongbo Wang, Zhicheng Pan, Jian Ren, Zexian Liu, Yu Xue
2015 J jnl
dbPSP: a curated database for protein phosphorylation sites in prokaryotes.
Database J. Biol. Databases Curation
Zhicheng Pan, Bangshan Wang, Ying Zhang, Yongbo Wang, Shahid Ullah, Jian Ren, Zexian Liu, Yu Xue
2014 J jnl
CPLM: a database of protein lysine modifications.
Nucleic Acids Res.
Zexian Liu, Yongbo Wang, Tianshun Gao, Zhicheng Pan, Han Cheng, Qing Yang, Zhongyi Cheng, Anyuan Guo, Jian Ren, Yu Xue
2014 J jnl
GPS-SUMO: a tool for the prediction of sumoylation sites and SUMO-interaction motifs.
Nucleic Acids Res.
Qi Zhao, Yubin Xie, Yueyuan Zheng, Shuai Jiang, Wenzhong Liu, Weiping Mu, Zexian Liu, Yong Zhao, Yu Xue, Jian Ren
2014 J jnl
dbPPT: a comprehensive database of protein phosphorylation in plants.
Database J. Biol. Databases Curation
Han Cheng, Wankun Deng, Yongbo Wang, Jian Ren, Zexian Liu, Yu Xue
2013 J jnl
Systematic analysis of the Plk-mediated phosphoregulation in eukaryotes.
Briefings Bioinform.
Zexian Liu, Jian Ren, Jun Cao, Jiang He, Xuebiao Yao, Changjiang Jin, Yu Xue
2013 J jnl
UUCD: a family-based database of ubiquitin and ubiquitin-like conjugation.
Nucleic Acids Res.
Tianshun Gao, Zexian Liu, Yongbo Wang, Han Cheng, Qing Yang, Anyuan Guo, Jian Ren, Yu Xue
2011 J jnl
CPLA 1.0: an integrated database of protein lysine acetylation.
Nucleic Acids Res.
Zexian Liu, Jun Cao, Xinjiao Gao, Yanhong Zhou, Longping Wen, Xiangjiao Yang, Xuebiao Yao, Jian Ren, Yu Xue
2010 J jnl
MiCroKit 3.0: an integrated database of midbody, centrosome and kinetochore.
Nucleic Acids Res.
Jian Ren, Zexian Liu, Xinjiao Gao, Changjiang Jin, Mingliang Ye, Hanfa Zou, Longping Wen, Zhaolei Zhang, Yu Xue, Xuebiao Yao