Jia Meng

67 papers C 4Misc 2Journal 39Unranked 22
YearRankTypeTitle / Venue / Authors
2026 J jnl
CircRM: profiling circular RNA modifications from nanopore direct RNA sequencing.
Briefings Bioinform.
Jiayi Li, Shenglun Chen, Zhixing Wu, Haozhe Wang, Rong Xia, Jia Meng, Yuxin Zhang
2025 J jnl
Multimodal zero-shot learning of previously unseen epitranscriptomes from RNA-seq data.
Briefings Bioinform.
Yiyou Song, Bowen Song, Daiyun Huang, Anh Nguyen, Lihong Hu, Jia Meng, Yue Wang
2024 — conf
Differentiating amino acids from nanopore sequencing.
ICBBT
Jiahao Zhang, Jia Meng, Yuxin Zhang
2024 J jnl
Tissue-specific RNA methylation prediction from gene expression data using sparse regression models.
Comput. Biol. Medicine
Jie Jiang, Bowen Song, Jia Meng, Jingxian Zhou
2023 — conf
A Robust Framework of Chromosome Straightening With Vit-Patch Gan.
ISBI
Sifan Song, Jinfeng Wang, Fengrui Cheng, Qirui Cao, Yihan Zuo, Yongteng Lei, Ruomai Yang, Chunxiao Yang, Frans Coenen, Jia Meng, Kang Dang, Jionglong Su
2023 J jnl
DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology.
Nucleic Acids Res.
Yuxin Zhang, Jie Jiang, Jiongming Ma, Zhen Wei, Yue Wang, Bowen Song, Jia Meng, Guifang Jia, João Pedro de Magalhães, Daniel J. Rigden, Daiyun Hang, Kunqi Chen
2023 J jnl
Multi-task adaptive pooling enabled synergetic learning of RNA modification across tissue, type and species from low-resolution epitranscriptomes.
Briefings Bioinform.
Yiyou Song, Yue Wang, Xuan Wang, Daiyun Huang, Anh Nguyen, Jia Meng
2023 J jnl
RMDisease V2.0: an updated database of genetic variants that affect RNA modifications with disease and trait implication.
Nucleic Acids Res.
Bowen Song, Xuan Wang, Zhanmin Liang, Jiongming Ma, Daiyun Huang, Yue Wang, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng, Gang Liu, Kunqi Chen, Zhen Wei
2023 J jnl
m6A-TSHub: Unveiling the Context-specific m
Genom. Proteom. Bioinform.
Bowen Song, Daiyun Huang, Yuxin Zhang, Zhen Wei, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng, Kunqi Chen
2022 J jnl
A New Convolutional Neural Network Architecture for Automatic Segmentation of Overlapping Human Chromosomes.
Neural Process. Lett.
Sifan Song, Tianming Bai, Yanxin Zhao, Wenbo Zhang, Chunxiao Yang, Jia Meng, Fei Ma, Jionglong Su
2022 J jnl
A Robust Framework of Chromosome Straightening with ViT-Patch GAN.
CoRR
Sifan Song, Jinfeng Wang, Fengrui Cheng, Qirui Cao, Yihan Zuo, Yongteng Lei, Ruomai Yang, Chunxiao Yang, Frans Coenen, Jia Meng, Kang Dang, Jionglong Su
2022 J jnl
FBCwPlaid: A Functional Biclustering Analysis of Epi-Transcriptome Profiling Data Via a Weighted Plaid Model.
IEEE ACM Trans. Comput. Biol. Bioinform.
Shutao Chen, Lin Zhang, Lin Lu, Jia Meng, Hui Liu
2022 — conf
Stepwise Feature Fusion: Local Guides Global.
MICCAI (3)
Jinfeng Wang, Qiming Huang, Feilong Tang, Jia Meng, Jionglong Su, Sifan Song
2022 J jnl
Stepwise Feature Fusion: Local Guides Global.
CoRR
Jinfeng Wang, Qiming Huang, Feilong Tang, Jia Meng, Jionglong Su, Sifan Song
2022 J jnl
m5C-Atlas: a comprehensive database for decoding and annotating the 5-methylcytosine (m5C) epitranscriptome.
Nucleic Acids Res.
Jiongming Ma, Bowen Song, Zhen Wei, Daiyun Huang, Yuxin Zhang, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng, Kunqi Chen
2021 C conf
A Meta-analysis: Evaluating the Effect of METTL3/METTL14 on m6A Level Based on Knockdown Samples.
BIBE
Yuxin Zhang, Yuxuan Wu, Di Zhen, Kunqi Chen, Jia Meng
2021 — conf
A Novel Application of Image-to-Image Translation: Chromosome Straightening Framework by Learning from a Single Image.
CISP-BMEI
Sifan Song, Daiyun Huang, Yalun Hu, Chunxiao Yang, Jia Meng, Fei Ma, Frans Coenen, Jiaming Zhang, Jionglong Su
2021 J jnl
A Novel Application of Image-to-Image Translation: Chromosome Straightening Framework by Learning from a Single Image.
CoRR
Sifan Song, Daiyun Huang, Yalun Hu, Chunxiao Yang, Jia Meng, Fei Ma, Jiaming Zhang, Jionglong Su
2021 C conf
Computational Prediction of N6-methyladenosine (m6A) RNA Methylation in SARS-CoV-2 Viral Transcripts.
BIBE
Qingru Xu, Xiangyu Wu, Jia Meng
2021 J jnl
ConsRM: collection and large-scale prediction of the evolutionarily conserved RNA methylation sites, with implications for the functional epitranscriptome.
Briefings Bioinform.
Bowen Song, Kunqi Chen, Yujiao Tang, Zhen Wei, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng
2021 J jnl
Funm6AViewer: a web server and R package for functional analysis of context-specific m6A RNA methylation.
Bioinform.
Song-Yao Zhang, Shaowu Zhang, Yujiao Tang, Xiaonan Fan, Jia Meng
2021 J jnl
MetaTX: deciphering the distribution of mRNA-related features in the presence of isoform ambiguity, with applications in epitranscriptome analysis.
Bioinform.
Yue Wang, Kunqi Chen, Zhen Wei, Frans Coenen, Jionglong Su, Jia Meng
2021 C conf
Prediction of m6A Reader Substrate Sites Using Deep Convolutional and Recurrent Neural Network.
BIBE
Yuxuan Wu, Yuxin Zhang, Ruoqi Wang, Jia Meng, Kunqi Chen, Yiyou Song, Daiyun Huang
2021 J jnl
RMDisease: a database of genetic variants that affect RNA modifications, with implications for epitranscriptome pathogenesis.
Nucleic Acids Res.
Kunqi Chen, Bowen Song, Yujiao Tang, Zhen Wei, Qingru Xu, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng
2021 J jnl
Weakly supervised learning of RNA modifications from low-resolution epitranscriptome data.
Bioinform.
Daiyun Huang, Bowen Song, Jingjue Wei, Jionglong Su, Frans Coenen, Jia Meng
2021 J jnl
m6A-Atlas: a comprehensive knowledgebase for unraveling the N6-methyladenosine (m6A) epitranscriptome.
Nucleic Acids Res.
Yujiao Tang, Kunqi Chen, Bowen Song, Jiongming Ma, Xiangyu Wu, Qingru Xu, Zhen Wei, Jionglong Su, Gang Liu, Rong Rong, Zhiliang Lu, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng
2020 C conf
An Improved Algorithm for Estimating the Distribution of RNA-related Genomic Features.
BIBE
Jinge Wu, Lihan Zhang, Yuanzhe Wang, Jia Meng, Jionglong Su, Yue Wang
2020 — conf
Gibbs Sampling Based Banoian Biclustering of Gene Expression Data.
CISP-BMEI
Daoyuan Chen, Qinyi Liu, Jia Meng, Jionglong Su
2020 J jnl
ISGm1A: Integration of Sequence Features and Genomic Features to Improve the Prediction of Human m
IEEE Access
Lian Liu, Xiujuan Lei, Jia Meng, Zhen Wei
2020 J jnl
REW-ISA: unveiling local functional blocks in epi-transcriptome profiling data via an RNA expression-weighted iterative signature algorithm.
BMC Bioinform.
Lin Zhang, Shutao Chen, Jingyi Zhu, Jia Meng, Hui Liu
2020 J jnl
m7GHub: deciphering the location, regulation and pathogenesis of internal mRNA N7-methylguanosine (m7G) sites in human.
Bioinform.
Bowen Song, Yujiao Tang, Kunqi Chen, Zhen Wei, Rong Rong, Zhiliang Lu, Jionglong Su, João Pedro de Magalhães, Daniel J. Rigden, Jia Meng
2019 — conf
Detection of m6A RNA Methylation in Nanopore Sequencing Data Using Support Vector Machine.
CISP-BMEI
Shen Jia, Haochen Luo, Qiheng Gao, Jiaqi Guo, Jionglong Su, Jia Meng, Xiangyu Wu
2019 J jnl
FunDMDeep-m6A: identification and prioritization of functional differential m6A methylation genes.
Bioinform.
Song-Yao Zhang, Shao-Wu Zhang, Xiao-Nan Fan, Teng Zhang, Jia Meng, Yufei Huang
2019 J jnl
Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods.
PLoS Comput. Biol.
Song-Yao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Shou-Jiang Gao, Yufei Huang
2019 J jnl
RNA methylation and diseases: experimental results, databases, Web servers and computational models.
Briefings Bioinform.
Xing Chen, Ya-Zhou Sun, Hui Liu, Lin Zhang, Jian-Qiang Li, Jia Meng
2019 J jnl
m6Acomet: large-scale functional prediction of individual m6A RNA methylation sites from an RNA co-methylation network.
BMC Bioinform.
Xiangyu Wu, Zhen Wei, Kunqi Chen, Qing Zhang, Jionglong Su, Hui Liu, Lin Zhang, Jia Meng
2018 — conf
A Machine Learning Approach for Uncovering N6-methyladenosine-Disease Association.
BCB
Songyao Zhang, Shaowu Zhang, Xiaonan Fan, Jia Meng, Yidong Chen, Yufei Huang
2018 J jnl
MeT-DB V2.0: elucidating context-specific functions of N6-methyl-adenosine methyltranscriptome.
Nucleic Acids Res.
Hui Liu, Huaizhi Wang, Zhen Wei, Songyao Zhang, Gang Hua, Shao-Wu Zhang, Lin Zhang, Shou-Jiang Gao, Jia Meng, Xing Chen, Yufei Huang
2018 J jnl
MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data.
IEEE ACM Trans. Comput. Biol. Bioinform.
Xiaodong Cui, Lin Zhang, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang
2018 J jnl
trumpet: transcriptome-guided quality assessment of m6A-seq data.
BMC Bioinform.
Teng Zhang, Shao-Wu Zhang, Lin Zhang, Jia Meng
2017 J jnl
Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net.
IEEE ACM Trans. Comput. Biol. Bioinform.
Lin Zhang, Hui Liu, Yufei Huang, Xuesong Wang, Yidong Chen, Jia Meng
2017 J jnl
QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model.
BMC Bioinform.
Lian Liu, Shao-Wu Zhang, Yufei Huang, Jia Meng
2016 J jnl
A novel algorithm for calling mRNA m
Bioinform.
Xiaodong Cui, Jia Meng, Shaowu Zhang, Yidong Chen, Yufei Huang
2016 J jnl
m6A-Driver: Identifying Context-Specific mRNA m6A Methylation-Driven Gene Interaction Networks.
PLoS Comput. Biol.
Song-Yao Zhang, Shao-Wu Zhang, Lian Liu, Jia Meng, Yufei Huang
2015 J jnl
MeT-DB: a database of transcriptome methylation in mammalian cells.
Nucleic Acids Res.
Hui Liu, Mario A. Flores, Jia Meng, Lin Zhang, Xinyu Zhao, Manjeet K. Rao, Yidong Chen, Yufei Huang
2015 — conf
Modeling of replicates variances for detecting RNA methylation site in MERIP-SEQ data.
ChinaSIP
Xiaodong Cui, Jia Meng, Shaowu Zhang, Yufei Huang
2015 — conf
Sketching the distribution of transcriptomic features on RNA transcripts with Travis coordinates.
BIBM
Xiaodong Cui, Zhen Wei, Lin Zhang, Hui Liu, Lei Sun, Shaowu Zhang, Yufei Huang, Jia Meng
2014 J jnl
Classification of Imperfectly Time-Locked Image RSVP Events with EEG Device.
Neuroinformatics
Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang
2014 — conf
Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test.
GlobalSIP
Lin Zhang, Jia Meng, Hui Liu, Xiaodong Cui, Shao-Wu Zhang, Yidong Chen, Yufei Huang
2014 — conf
Differential analysis of RNA methylome with improved spatial resolution.
GlobalSIP
Yu-Chen Zhang, Shao-Wu Zhang, Lian Liu, Lin Zhang, Hui Liu, Xiaodong Cui, Yufei Huang, Jia Meng
2013 — conf
A Deep Learning method for classification of images RSVP events with EEG data.
GlobalSIP
Shaheen Ahmed, Lenis Mauricio Merino, Zijing Mao, Jia Meng, Kay Robbins, Yufei Huang
2013 Misc conf
A bag-of-words model for task-load prediction from EEG in complex environments.
ICASSP
Lenis Mauricio Merino, Jia Meng, Stephen M. Gordon, Brent J. Lance, Tony Johnson, Victor Paul, Kay Robbins, Jean M. Vettel, Yufei Huang
2013 — conf
An HMM-based Exome Peak-finding package for RNA epigenome sequencing data.
GENSiPS
Xiaodong Cui, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang
2013 — conf
Differential analysis of rna methylation sequencing data.
GlobalSIP
Xiaodong Cui, Jia Meng, Manjeet K. Rao, Yidong Chen, Yufei Huang
2013 J jnl
Exome-based analysis for RNA epigenome sequencing data.
Bioinform.
Jia Meng, Xiaodong Cui, Manjeet K. Rao, Yidong Chen, Yufei Huang
2013 — conf
Integration of gene expression, genome wide DNA methylation, and gene networks for clinical outcome prediction in ovarian cancer.
BIBM
Lin Zhang, Hui Liu, Jia Meng, Xuesong Wang, Yidong Chen, Yufei Huang
2013 — conf
Unveiling the dynamics in RNA epigenetic regulations.
BIBM
Jia Meng, Xiaodong Cui, Hui Liu, Lin Zhang, Shaowu Zhang, Manjeet K. Rao, Yidong Chen, Yufei Huang
2012 — conf
Basis-expansion factor models for uncovering transcription factor regulatory network.
SSP
Manuel Sanchez-Castillo, Jia Meng, Isabel M. Tienda-Luna, Yufei Huang
2012 — conf
Classification of EEG recordings without perfectly time-locked events.
SSP
Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang
2012 — conf
Exploiting correlated discriminant features in time frequency and space for characterization and robust classification of image RSVP events with EEG data.
SSP
Jia Meng, Lenis Mauricio Merino, Kay Robbins, Yufei Huang
2012 J jnl
Understanding MicroRNA Regulation: A computational perspective.
IEEE Signal Process. Mag.
Dong Yue, Jia Meng, Mingzhu Lu, C. L. Philip Chen, Maozu Guo, Yufei Huang
2011 — conf
Clustering DNA methylation expressions using nonparametric beta mixture model.
GENSiPS
Lin Zhang, Jia Meng, Hui Liu, Yufei Huang
2011 Misc conf
Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor model.
ICASSP
Jia Meng, Hung-I Chen, Jianqiu Zhang, Yidong Chen, Yufei Huang
2010 — conf
An Iterated Conditional Modes solution for sparse Bayesian factor modeling of transcriptional regulatory networks.
BIBM
Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang
2010 — conf
An iterated conditional mode solution for Bayesian factor modeling of transcriptional regulatory networks.
GENSiPS
Jia Meng, Jianqiu Zhang, Yidong Chen, Yufei Huang
2010 J jnl
Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor Model.
EURASIP J. Adv. Signal Process.
Jia Meng, Jianqiu (Michelle) Zhang, Yuan (Alan) Qi, Yidong Chen, Yufei Huang
2009 J jnl
Enrichment constrained time-dependent clustering analysis for finding meaningful temporal transcription modules.
Bioinform.
Jia Meng, Shou-Jiang Gao, Yufei Huang