Jessica Cara Mar

12 papers Journal 12
YearRankTypeTitle / Venue / Authors
2025 J jnl
Assessing tissue-specific gene expression of essential genes from human and mouse.
Briefings Bioinform.
Huiwen Zheng, Atefeh Taherian Fard, Jessica Cara Mar
2025 J jnl
Establishing the Asia & Pacific Bioinformatics Joint Congress: a historic milestone in regional bioinformatics collaboration.
Briefings Bioinform.
Asif M. Khan, Susumu Goto, Kenta Nakai, Limsoon Wong, Diane E. Kovats, Yuki Saito, Shinya Ikematsu, Yoshihiro Yamanishi, Nurul Salwanie Che Wahid, Harpreet Singh, Pradeep Eranti, Yi-Ping Phoebe Chen, Tae-Min Kim, Shinn-Ying Ho, Jessica Cara Mar, Wataru Iwasaki, Jayaraman Valadi, Prashanth Suravajhala, Christian Schönbach, Tin Wee Tan, Shoba Ranganathan, Kiyoko F. Aoki-Kinoshita
2022 J jnl
How does the structure of data impact cell-cell similarity? Evaluating how structural properties influence the performance of proximity metrics in single cell RNA-seq data.
Briefings Bioinform.
Ebony Rose Watson, Ariane Mora, Atefeh Taherian Fard, Jessica Cara Mar
2020 J jnl
The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data.
BMC Bioinform.
Laurence de Torrenté, Samuel E. Zimmerman, Masako Suzuki, Maximilian Christopeit, John M. Greally, Jessica Cara Mar
2019 J jnl
Aneuvis: web-based exploration of numerical chromosomal variation in single cells.
BMC Bioinform.
Daniel G. Piqué, Grasiella A. Andriani, Elaine Maggi, Samuel E. Zimmerman, John M. Greally, Cristina Montagna, Jessica Cara Mar
2019 J jnl
Investigating skewness to understand gene expression heterogeneity in large patient cohorts.
BMC Bioinform.
Benjamin V. Church, Henry T. Williams, Jessica Cara Mar
2018 J jnl
Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data.
BMC Bioinform.
Shuonan Chen, Jessica Cara Mar
2012 J jnl
Viral Perturbations of Host Networks Reflect Disease Etiology.
PLoS Comput. Biol.
Natali Gulbahce, Han Yan, Amélie Dricot, Megha Padi, Danielle Byrdsong, Rachel Franchi, Deok-Sun Lee, Orit Rozenblatt-Rosen, Jessica Cara Mar, Michael A. Calderwood, Amy Baldwin, Bo Zhao, Balaji Santhanam, Pascal Braun, Nicolas Simonis, Kyung-Won Huh, Karin Hellner, Miranda Grace, Alyce Chen, Renee Rubio, Jarrod A. Marto, Nicholas A. Christakis, Elliott Kieff, Frederick P. Roth, Jennifer Roecklein-Canfield, James A. DeCaprio, Michael E. Cusick, John Quackenbush, David E. Hill, Karl Münger, Marc Vidal, Albert-László Barabási
2012 J jnl
nEASE: a method for gene ontology subclassification of high-throughput gene expression data.
Bioinform.
Thomas W. Chittenden, Eleanor Howe, Jennifer M. Taylor, Jessica Cara Mar, Martin J. Aryee, Harold Gómez, Razvan Sultana, John C. Braisted, Sarita J. Nair, John Quackenbush, Chris Holmes
2011 J jnl
Defining an informativeness metric for clustering gene expression data.
Bioinform.
Jessica Cara Mar, Christine A. Wells, John Quackenbush
2009 J jnl
Data-driven normalization strategies for high-throughput quantitative RT-PCR.
BMC Bioinform.
Jessica Cara Mar, Yasumasa Kimura, Kate Schroder, Katharine M. Irvine, Yoshihide Hayashizaki, Harukazu Suzuki, David A. Hume, John Quackenbush
2009 J jnl
Decomposition of Gene Expression State Space Trajectories.
PLoS Comput. Biol.
Jessica Cara Mar, John Quackenbush