Jeremy Goecks

22 papers A* 1A 5Journal 11Unranked 3
YearRankTypeTitle / Venue / Authors
2022 J jnl
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.
Nucleic Acids Res.
Enis Afgan, Anton Nekrutenko, Björn A. Grüning, Daniel J. Blankenberg, Jeremy Goecks, Michael C. Schatz, Alexander E. Ostrovsky, Alexandru Mahmoud, Andrew J. Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anup Kumar, Arthur C. Eschenlauer, Assunta D. Desanto, Aysam Guerler, Beatriz Serrano-Solano, Bérénice Batut, Bradley W. Langhorst, Bridget Carr, Bryan A. Raubenolt, Cameron J. Hyde, Catherine J. Bromhead, Christopher B. Barnett, Coline Royaux, Cristóbal Gallardo, Daniel J. Fornika, Dannon Baker, Dave Bouvier, Dave Clements, David A. de Lima Morais, David Lopez Tabernero, Delphine Larivière, Engy Nasr, Federico Zambelli, Florian Heyl, Fotis E. Psomopoulos, Frederik Coppens, Gareth R. Price, Gianmauro Cuccuru, Gildas Le Corguillé, Gregory Von Kuster, Gulsum Gudukbay, Helena Rasche, Hans-Rudolf Hotz, Ignacio Eguinoa, Igor V. Makunin, Isuru Ranawaka, James Taylor, Jayadev Joshi, Jennifer Hillman-Jackson, John Chilton, Kaivan Kamali, Keith Suderman, Krzysztof Poterlowicz, Yvan Le Bras, Lucille Lopez-Delisle, Luke Sargent, Madeline E. Bassetti, Marco Antonio Tangaro, Marius van den Beek, Martin Cech, Matthias Bernt, Matthias Fahrner, Mehmet Tekman, Melanie Christine Föll, Michael R. Crusoe, Miguel Roncoroni, Natalie Kucher, Nate Coraor, Nicholas Stoler, Nick Rhodes, Nicola Soranzo, Niko Pinter, Nuwan Goonasekera, Pablo A. Moreno, Pavankumar Videm, Petera Melanie, Pietro Mandreoli, Pratik D. Jagtap, Qiang Gu, Ralf J. M. Weber, Ross Lazarus, Ruben H. P. Vorderman, Saskia D. Hiltemann, Sergey Golitsynskiy, Shilpa Garg, Simon A. Bray, Simon L. Gladman, Simone Leo, Subina P. Mehta, Timothy J. Griffin, Vahid Jalili, Yves Vandenbrouck, Victor Wen, Vijay K. Nagampalli, Wendi A. Bacon, Willem L. De Koning, Wolfgang Maier, Peter J. Briggs
2021 J jnl
Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine.
PLoS Comput. Biol.
Qiang Gu, Anup Kumar, Simon Bray, Allison Creason, Alireza Khanteymoori, Vahid Jalili, Björn A. Grüning, Jeremy Goecks
2020 J jnl
Cloud bursting galaxy: federated identity and access management.
Bioinform.
Vahid Jalili, Enis Afgan, James Taylor, Jeremy Goecks
2020 J jnl
G-OnRamp: Generating genome browsers to facilitate undergraduate-driven collaborative genome annotation.
PLoS Comput. Biol.
Luke Sargent, Yating Liu, Wilson Leung, Nathan T. Mortimer, David Lopatto, Jeremy Goecks, Sarah C. R. Elgin
2020 J jnl
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update.
Nucleic Acids Res.
Vahid Jalili, Enis Afgan, Qiang Gu, Dave Clements, Daniel J. Blankenberg, Jeremy Goecks, James Taylor, Anton Nekrutenko
2019 J jnl
G-OnRamp: a Galaxy-based platform for collaborative annotation of eukaryotic genomes.
Bioinform.
Yating Liu, Luke Sargent, Wilson Leung, Sarah C. R. Elgin, Jeremy Goecks
2019 J jnl
Next Generation Indexing for Genomic Intervals.
IEEE Trans. Knowl. Data Eng.
Vahid Jalili, Matteo Matteucci, Jeremy Goecks, Yashar Deldjoo, Stefano Ceri
2018 — conf
Federated Galaxy: Biomedical Computing at the Frontier.
IEEE CLOUD
Enis Afgan, Vahid Jalili, Nuwan Goonasekera, James Taylor, Jeremy Goecks
2018 J jnl
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.
Nucleic Acids Res.
Enis Afgan, Dannon Baker, Bérénice Batut, Marius van den Beek, Dave Bouvier, Martin Cech, John Chilton, Dave Clements, Nate Coraor, Björn A. Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Saskia D. Hiltemann, Vahid Jalili, Helena Rasche, Nicola Soranzo, Jeremy Goecks, James Taylor, Anton Nekrutenko, Daniel J. Blankenberg
2016 J jnl
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.
Nucleic Acids Res.
Enis Afgan, Dannon Baker, Marius van den Beek, Daniel J. Blankenberg, Dave Bouvier, Martin Cech, John Chilton, Dave Clements, Nate Coraor, Carl Eberhard, Björn A. Grüning, Aysam Guerler, Jennifer Hillman-Jackson, Gregory Von Kuster, Eric Rasche, Nicola Soranzo, Nitesh Turaga, James Taylor, Anton Nekrutenko, Jeremy Goecks
2015 J jnl
A Quick Guide for Building a Successful Bioinformatics Community.
PLoS Comput. Biol.
Aidan Budd, Manuel Corpas, Michelle D. Brazas, Jonathan C. Fuller, Jeremy Goecks, Nicola J. Mulder, Magali Michaut, B. F. Francis Ouellette, Aleksandra Pawlik, Niklas Blomberg
2015 J jnl
The Bioinformatics Open Source Conference (BOSC) 2013.
Bioinform.
Nomi L. Harris, Peter J. A. Cock, Brad A. Chapman, Jeremy Goecks, Hans-Rudolf Hotz, Hilmar Lapp
2012 — conf
Lessons learned from Galaxy, a Web-based platform for high-throughput genomic analyses.
eScience
Jeremy Goecks, The Galaxy Team, Anton Nekrutenko, James Taylor
2011 — ch.
Galaxy: A Gateway to Tools in e-Science.
Guide to e-Science
Enis Afgan, Jeremy Goecks, Dannon Baker, Nate Coraor, Anton Nekrutenko, James Taylor
2011 — conf
The Galaxy Track Browser: Transforming the genome browser from visualization tool to analysis tool.
BioVis
Jeremy Goecks, Kanwei Li, Dave Clements, The Galaxy Team, James Taylor
2009 A conf
Challenges in supporting end-user privacy and security management with social navigation.
SOUPS
Jeremy Goecks, W. Keith Edwards, Elizabeth D. Mynatt
2009 — —
Understanding the social navigation user experience.
Jeremy Goecks
2008 A conf
Charitable technologies: opportunities for collaborative computing in nonprofit fundraising.
CSCW
Jeremy Goecks, Amy Voida, Stephen Voida, Elizabeth D. Mynatt
2004 A conf
Leveraging social networks for information sharing.
CSCW
Jeremy Goecks, Elizabeth D. Mynatt
2002 A* conf
Augmenting shared personal calendars.
UIST
Joe Tullio, Jeremy Goecks, Elizabeth D. Mynatt, David H. Nguyen
2002 A conf
NuggetMine: intelligent groupware for opportunistically sharing information nuggets.
IUI
Jeremy Goecks, Dan Cosley
2000 A conf
Learning users' interests by unobtrusively observing their normal behavior.
IUI
Jeremy Goecks, Jude W. Shavlik