Jeremy Buhler - RankMe

59 papers A 5B 10C 1Misc 5Journal 19Unranked 18

Year	Rank	Type	Title / Venue / Authors
2025	—	`conf`	Coordinating Instruments for Multi-Messenger Astrophysics: Invited Paper. CF (Companion) Daisy Wang, Ye Htet, Marion Sudvarg, Roger D. Chamberlain, Jeremy Buhler, James H. Buckley
2025	—	`conf`	Modeling and Optimizing Real-Time Telescope Interaction for Multi-wavelength Observation of Gamma-ray Bursts. SC Workshops Ye Htet, Marion Sudvarg, Honghao Yang, Jeremy Buhler, Roger D. Chamberlain, James H. Buckley
2025	A	`conf`	Probabilistic Response-Time-Aware Search for Transient Astrophysical Phenomena. RTSS Daisy Wang, Marion Sudvarg, Filip Markovic, Jeremy Buhler, Sanjoy Baruah, Gregory Kehne
2024	A	`conf`	Elastic Scheduling for Harmonic Task Systems. RTAS Marion Sudvarg, Ao Li, Daisy Wang, Sanjoy K. Baruah, Jeremy Buhler, Chris Gill, Ning Zhang, Pontus Ekberg
2024	—	`conf`	HLS Taking Flight: Toward Using High-Level Synthesis Techniques in a Space-Borne Instrument. CF Marion Sudvarg, Chenfeng Zhao, Ye Htet, Meagan Konst, Thomas Lang, Nick Song, Roger D. Chamberlain, Jeremy Buhler, James H. Buckley
2024	A	`conf`	Subtask-Level Elastic Scheduling. RTSS Marion Sudvarg, Daisy Wang, Jeremy Buhler, Chris Gill
2024	—	`conf`	The Advanced Particle-astrophysics Telescope (APT): Computation in Space. CF (Companion) James H. Buckley, Jeremy Buhler, Roger D. Chamberlain
2023	J	`jnl`	Interruptible Nodes: Reducing Queueing Costs in Irregular Streaming Dataflow Applications on Wide-SIMD Architectures. Int. J. Parallel Program. Stephen Timcheck, Jeremy Buhler
2023	—	`conf`	Localization of Gamma-ray Bursts in a Balloon-Borne Telescope. SC Workshops Ye Htet, Marion Sudvarg, Jeremy Buhler, Roger D. Chamberlain, James H. Buckley
2023	B	`conf`	Parameterized Workload Adaptation for Fork-Join Tasks with Dynamic Workloads and Deadlines. RTCSA Marion Sudvarg, Jeremy Buhler, Roger D. Chamberlain, Christopher D. Gill, James H. Buckley, Wenlei Chen
2022	J	`jnl`	Reducing queuing impact in streaming applications with irregular dataflow. Parallel Comput. Stephen Timcheck, Jeremy Buhler
2021	—	`conf`	A Scalable Approximation Algorithm for Weighted Longest Common Subsequence. Euro-Par Jeremy Buhler, Thomas Lavastida, Kefu Lu, Benjamin Moseley
2021	—	`conf`	Enabling Real-Time Irregular Data-Flow Pipelines on SIMD Devices. ICPP Workshops Tom Plano, Jeremy Buhler
2021	—	`conf`	Toward Evaluating High-Level Synthesis Portability and Performance between Intel and Xilinx FPGAs. IWOCL Anthony M. Cabrera, Aaron R. Young, Jacob Lambert, Zhili Xiao, Amy An, Seyong Lee, Zheming Jin, Jungwon Kim, Jeremy Buhler, Roger D. Chamberlain, Jeffrey S. Vetter
2020	—	`conf`	Scheduling Irregular Dataflow Pipelines on SIMD Architectures. WPMVP@PPoPP Tom Plano, Jeremy Buhler
2020	J	`jnl`	Streaming Computations with Region-Based State on SIMD Architectures. CoRR Stephen Timcheck, Jeremy Buhler
2017	—	`conf`	MERCATOR: A GPGPU Framework for Irregular Streaming Applications. HPCS Stephen V. Cole, Jeremy Buhler
2015	—	`conf`	Deadlock-free buffer configuration for stream computing. PMAM@PPoPP Peng Li, Jonathan C. Beard, Jeremy Buhler
2014	B	`conf`	Improving performance of streaming applications with filtering and control messages. PACT Peng Li, Jeremy Buhler
2014	B	`conf`	Orchestrating safe streaming computations with precise control. ICPADS Peng Li, Kunal Agrawal, Jeremy Buhler, Roger D. Chamberlain
2013	Misc	`conf`	Adding data parallelism to streaming pipelines for throughput optimization. HiPC Peng Li, Kunal Agrawal, Jeremy Buhler, Roger D. Chamberlain
2012	J	`jnl`	Designing Filters for Fast-Known NcRNA Identification. IEEE ACM Trans. Comput. Biol. Bioinform. Yanni Sun, Jeremy Buhler, Cheng Yuan
2012	J	`jnl`	Fast, Sensitive Discovery of Conserved Genome-Wide Motifs. J. Comput. Biol. Nnamdi E. Ihuegbu, Gary D. Stormo, Jeremy Buhler
2010	—	`conf`	Accelerating HMMER on GPUs by implementing hybrid data and task parallelism. BCB Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhler, Michela Taufer
2010	Misc	`conf`	Application-guided tool development for architecturally diverse computation. SAC Roger D. Chamberlain, Jeremy Buhler, Mark A. Franklin, James H. Buckley
2010	J	`jnl`	Auto-Pipe: Streaming Applications on Architecturally Diverse Systems. Computer Roger D. Chamberlain, Mark A. Franklin, Eric J. Tyson, James H. Buckley, Jeremy Buhler, Greg Galloway, Saurabh Gayen, Michael J. Hall, E. F. Berkley Shands, Naveen Singla
2010	B	`conf`	Deadlock avoidance for streaming computations with filtering. SPAA Peng Li, Kunal Agrawal, Jeremy Buhler, Roger D. Chamberlain
2010	—	`conf`	Deadlock-avoidance for streaming applications with split-join structure: Two case studies. ASAP Peng Li, Kunal Agrawal, Jeremy Buhler, Roger D. Chamberlain, Joseph M. Lancaster
2010	J	`jnl`	Experiences with active learning in CS 3. J. Comput. Sci. Coll. Ross T. Sowell, Yixin Chen, Jeremy Buhler, Sally A. Goldman, Cindy Grimm, Kenneth J. Goldman
2009	J	`jnl`	Acceleration of ungapped extension in Mercury BLAST. Microprocess. Microsystems Joseph M. Lancaster, Jeremy Buhler, Roger D. Chamberlain
2009	J	`jnl`	Designing Patterns and Profiles for Faster HMM Search. IEEE ACM Trans. Comput. Biol. Bioinform. Yanni Sun, Jeremy Buhler
2008	—	`conf`	Accelerating Nussinov RNA secondary structure prediction with systolic arrays on FPGAs. ASAP Arpith C. Jacob, Jeremy Buhler, Roger D. Chamberlain
2008	J	`jnl`	Mercury BLASTP: Accelerating Protein Sequence Alignment. ACM Trans. Reconfigurable Technol. Syst. Arpith C. Jacob, Joseph M. Lancaster, Jeremy Buhler, Brandon Harris, Roger D. Chamberlain
2007	B	`conf`	A Banded Smith-Waterman FPGA Accelerator for Mercury BLASTP. FPL Brandon Harris, Arpith C. Jacob, Joseph M. Lancaster, Jeremy Buhler, Roger D. Chamberlain
2007	A	`conf`	Application development on hybrid systems. SC Roger D. Chamberlain, Mark A. Franklin, Eric J. Tyson, Jeremy Buhler, Saurabh Gayen, Patrick Crowley, James H. Buckley
2007	J	`jnl`	Biosequence Similarity Search on the J. VLSI Signal Process. Praveen Krishnamurthy, Jeremy Buhler, Roger D. Chamberlain, Mark A. Franklin, Kwame Gyang, Arpith C. Jacob, Joseph M. Lancaster
2007	J	`jnl`	Designing patterns for profile HMM search. Bioinform. Yanni Sun, Jeremy Buhler
2007	Misc	`conf`	FPGA-accelerated seed generation in Mercury BLASTP. FCCM Arpith C. Jacob, Joseph M. Lancaster, Jeremy Buhler, Roger D. Chamberlain
2006	A	`conf`	Accelerator design for protein sequence HMM search. ICS Rahul P. Maddimsetty, Jeremy Buhler, Roger D. Chamberlain, Mark A. Franklin, Brandon Harris
2006	J	`jnl`	Choosing the best heuristic for seeded alignment of DNA sequences. BMC Bioinform. Yanni Sun, Jeremy Buhler
2006	B	`conf`	RNA Secondary Structure Prediction Via Energy Density Minimization. RECOMB Can Alkan, Emre Karakoç, Süleyman Cenk Sahinalp, Peter J. Unrau, H. Alexander Ebhardt, Kaizhong Zhang, Jeremy Buhler
2006	Misc	`conf`	Scalable Softcore Vector Processor for Biosequence Applications. FCCM Arpith C. Jacob, Brandon Harris, Jeremy Buhler, Roger D. Chamberlain, Young H. Cho
2005	J	`jnl`	Designing Multiple Simultaneous Seeds for DNA Similarity Search. J. Comput. Biol. Yanni Sun, Jeremy Buhler
2005	J	`jnl`	Designing seeds for similarity search in genomic DNA. J. Comput. Syst. Sci. Jeremy Buhler, Uri Keich, Yanni Sun
2005	—	`conf`	Exploiting Coarse-Grained Parallelism to Accelerate Protein Motif Finding with a Network Processor. IEEE PACT Ben Wun, Jeremy Buhler, Patrick Crowley
2004	—	`conf`	Biosequence Similarity Search on the Mercury System. ASAP Praveen Krishnamurthy, Jeremy Buhler, Roger D. Chamberlain, Mark A. Franklin, Kwame Gyang, Joseph M. Lancaster
2004	Misc	`conf`	Design of a High-Throughput Assay for Alternative Splicing Using Polymerase Colonies. Pacific Symposium on Biocomputing Jeremy Buhler, Richard Souvenir, Weixiong Zhang, Rob Mitra
2004	B	`conf`	Designing multiple simultaneous seeds for DNA similarity search. RECOMB Yanni Sun, Jeremy Buhler
2004	—	`conf`	Toward a Phylogenetically Aware Algorithm for Fast DNA Similarity Search. Comparative Genomics Jeremy Buhler, Rachel Nordgren
2003	B	`conf`	Designing seeds for similarity search in genomic DNA. RECOMB Jeremy Buhler, Uri Keich, Yanni Sun
2003	—	`conf`	Detecting protein sequence conservation via metric embeddings. ISMB (Supplement of Bioinformatics) Eran Halperin, Jeremy Buhler, Richard M. Karp, Robert Krauthgamer, Ben Westover
2003	J	`jnl`	Provably Sensitive Indexing Strategies for Biosequence Similarity Search. J. Comput. Biol. Jeremy Buhler
2003	C	`conf`	Selecting Degenerate Multiplex PCR Primers. WABI Richard Souvenir, Jeremy Buhler, Gary D. Stormo, Weixiong Zhang
2002	J	`jnl`	Finding Motifs Using Random Projections. J. Comput. Biol. Jeremy Buhler, Martin Tompa
2002	B	`conf`	Provably sensitive Indexing strategies for biosequence similarity search. RECOMB Jeremy Buhler
2001	J	`jnl`	Efficient large-scale sequence comparison by locality-sensitive hashing. Bioinform. Jeremy Buhler
2001	B	`conf`	Finding motifs using random projections. RECOMB Jeremy Buhler, Martin Tompa
2001	—	`—`	Search algorithms for biosequences using random projection. Jeremy Buhler
1995	J	`jnl`	The Fox Project: a language-structured approach to networking software. XRDS Jeremy Buhler