Jeongsik Yong

11 papers Journal 11
YearRankTypeTitle / Venue / Authors
2026 J jnl
EpGAT: integrating epigenetics and 3D genome structure to predict alternative splicing and polyadenylation.
Briefings Bioinform.
Sudipto Baul, Naima Ahmed Fahmi, Guangyu Wang, Hao Zheng, Ahmed Louri, Jeongsik Yong, Wei Zhang
2025 J jnl
IPScan: Detecting novel intronic PolyAdenylation events with RNA-seq data.
PLoS Comput. Biol.
Naima Ahmed Fahmi, Sze Cheng, Jeovani Overstreet, Qianqian Song, Jeongsik Yong, Wei Zhang
2024 J jnl
Integrating spatial transcriptomics and bulk RNA-seq: predicting gene expression with enhanced resolution through graph attention networks.
Briefings Bioinform.
Sudipto Baul, Khandakar Tanvir Ahmed, Qibing Jiang, Guangyu Wang, Qian Li, Jeongsik Yong, Wei Zhang
2023 J jnl
Incomplete time-series gene expression in integrative study for islet autoimmunity prediction.
Briefings Bioinform.
Khandakar Tanvir Ahmed, Sze Cheng, Qian Li, Jeongsik Yong, Wei Zhang
2022 J jnl
APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data.
BMC Bioinform.
Naima Ahmed Fahmi, Khandakar Tanvir Ahmed, Jae-Woong Chang, Heba Nassereddeen, Deliang Fan, Jeongsik Yong, Wei Zhang
2021 J jnl
Imputation of spatially-resolved transcriptomes by graph-regularized tensor completion.
PLoS Comput. Biol.
Zhuliu Li, Tianci Song, Jeongsik Yong, Rui Kuang
2021 J jnl
In silico model for miRNA-mediated regulatory network in cancer.
Briefings Bioinform.
Khandakar Tanvir Ahmed, Jiao Sun, William Chen, Irene Martinez, Sze Cheng, Wencai Zhang, Jeongsik Yong, Wei Zhang
2021 J jnl
Multi-omics data integration by generative adversarial network.
Bioinform.
Khandakar Tanvir Ahmed, Jiao Sun, Sze Cheng, Jeongsik Yong, Wei Zhang
2020 J jnl
Platform-integrated mRNA isoform quantification.
Bioinform.
Jiao Sun, Jae-Woong Chang, Teng Zhang, Jeongsik Yong, Rui Kuang, Wei Zhang
2016 J jnl
An integrative somatic mutation analysis to identify pathways linked with survival outcomes across 19 cancer types.
Bioinform.
Sunho Park, Seung-Jun Kim, Donghyeon Yu, Samuel Peña-Llopis, Jianjiong Gao, Jinsuk Park, Beibei Chen, Jessie Norris, Xinlei Wang, Min Chen, Min-Su Kim, Jeongsik Yong, Zabi Wardak, Kevin Choe, Michael Story, Timothy K. Starr, Jae-Ho Cheong, Taehyun Hwang
2015 J jnl
Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis.
PLoS Comput. Biol.
Wei Zhang, Jae-Woong Chang, Lilong Lin, Kay Minn, Baolin Wu, Jeremy Chien, Jeongsik Yong, Hui Zheng, Rui Kuang