Jens Krüger

53 papers B 3C 3Journal 27Unranked 16
YearRankTypeTitle / Venue / Authors
2021 J jnl
Performance and scaling behavior of bioinformatic applications in virtualization environments to create awareness for the efficient use of compute resources.
PLoS Comput. Biol.
Maximilian Hanussek, Felix Bartusch, Jens Krüger
2020 J jnl
BOOTABLE: Bioinformatics benchmark tool suite for applications and hardware.
Future Gener. Comput. Syst.
Maximilian Hanussek, Felix Bartusch, Jens Krüger
2020 — conf
The Vesicle Builder - A Membrane Packing Algorithm for the CELLmicrocosmos MembraneEditor.
MolVa@Eurographics/EuroVis
Beatrice Giuliari, Manuel Kösters, Jan Zhou, Tim Dingersen, André J. Heissmann, Ralf Rotzoll, Jens Krüger, Alejandro Giorgetti, Björn Sommer
2019 B conf
BOOTABLE: Bioinformatics Benchmark Tool Suite.
CCGRID
Maximilian Hanussek, Felix Bartusch, Jens Krüger, Oliver Kohlbacher
2019 — conf
CiTAR - Citing & Archiving Research.
IWSG
Felix Bartusch, Jens Krüger, Klaus Rechert, Oleg Zharkov, Kyryll Udod
2019 B conf
Reproducible Scientific Workflows for High Performance and Cloud Computing.
CCGRID
Felix Bartusch, Maximilian Hanussek, Jens Krüger, Oliver Kohlbacher
2019 J jnl
de.NBI Cloud federation through ELIXIR AAI.
F1000Research
Peter Belmann, Björn Fischer, Jan Krüger, Michal Procházka, Helena Rasche, Manuel Prinz, Maximilian Hanussek, Martin Lang, Felix Bartusch, Benjamin Gläßle, Jens Krüger, Alfred Pühler, Alexander Sczyrba
2018 — conf
Automatic Generation of Provenance Metadata during Execution of Scientific Workflows.
IWSG
Felix Bartusch, Maximilian Hanussek, Jens Krüger
2018 J jnl
Gathering requirements for advancing simulations in HPC infrastructures via science gateways.
Future Gener. Comput. Syst.
Sandra Gesing, Rion Dooley, Marlon E. Pierce, Jens Krüger, Richard Grunzke, Sonja Herres-Pawlis, Alexander Hoffmann
2017 — conf
Efficient Mass Spectra Prediction through Container Orchestration with a Scientific Workflow.
IWSG
Maximilian Hanussek, Felix Bartusch, Jens Krüger, Oliver Kohlbacher
2017 — conf
Maintaining a Science Gateway - Lessons Learned from MoSGrid.
HICSS
Lukas Zimmermann, Richard Grunzke, Jens Krüger
2017 J jnl
Metadata Management in the MoSGrid Science Gateway - Evaluation and the Expansion of Quantum Chemistry Support.
J. Grid Comput.
Richard Grunzke, Jens Krüger, René Jäkel, Wolfgang E. Nagel, Sonja Herres-Pawlis, Alexander Hoffmann
2017 — conf
Open Molecular Science for the Open Science Cloud.
ICCSA (3)
Antonio Laganà, Gábor Terstyánszky, Jens Krüger
2017 — ed.
Proceedings of the 8th International Workshop on Science Gateways, IWSG 2016, Rome, Italy, June 8-10, 2016
IWSG
Sandra Gesing, Jens Krüger
2016 J jnl
Containerization and wrapping of a mass spectra prediction workflow.
PeerJ Prepr.
Jens Krüger, Oliver Kohlbacher
2016 J jnl
Multi-level meta-workflows: new concept for regularly occurring tasks in quantum chemistry.
J. Cheminformatics
Junaid Arshad, Alexander Hoffmann, Sandra Gesing, Richard Grunzke, Jens Krüger, Tamás Kiss, Sonja Herres-Pawlis, Gábor Terstyánszky
2016 J jnl
Using Science Gateways for Bridging the Differences between Research Infrastructures.
J. Grid Comput.
Sandra Gesing, Jens Krüger, Richard Grunzke, Sonja Herres-Pawlis, Alexander Hoffmann
2015 B conf
Managing Complexity in Distributed Data Life Cycles Enhancing Scientific Discovery.
e-Science
Richard Grunzke, Alvaro Aguilera, Wolfgang E. Nagel, Jens Krüger, Sonja Herres-Pawlis, Alexander Hoffmann, Sandra Gesing
2015 J jnl
Quantum chemical meta-workflows in MoSGrid.
Concurr. Comput. Pract. Exp.
Sonja Herres-Pawlis, Alexander Hoffmann, Ákos Balaskó, Péter Kacsuk, Georg Birkenheuer, André Brinkmann, Luis de la Garza, Jens Krüger, Sandra Gesing, Richard Grunzke, Gábor Terstyánszky, Noam Weingarten
2015 — conf
Science gateways - leveraging modeling and simulations in HPC infrastructures via increased usability.
HPCS
Sandra Gesing, Rion Dooley, Marlon E. Pierce, Jens Krüger, Richard Grunzke, Sonja Herres-Pawlis, Alexander Hoffmann
2015 J jnl
ballaxy: web services for structural bioinformatics.
Bioinform.
Anna Katharina Hildebrandt, Daniel Stöckel, Nina M. Fischer, Luis de la Garza, Jens Krüger, Stefan Nickels, Marc Röttig, Charlotta Schärfe, Marcel Schumann, Philipp Thiel, Hans-Peter Lenhof, Oliver Kohlbacher, Andreas Hildebrandt
2014 — conf
Expansion of Quantum Chemical Metadata for Workflows in the MoSGrid Science Gateway.
IWSG
Sonja Herres-Pawlis, Alexander Hoffmann, Luis de la Garza, Jens Krüger, Richard Grunzke
2014 — conf
Integration of eSBMTools into the MoSGrid Portal Using the gUSE Technology.
IWSG
Stefan Bozic, Jens Krüger, Claude Sinner, Benjamin Lutz, Alexander Schug, Ivan Kondov
2014 J jnl
Membrane simulation analysis using Voronoi tessellation.
J. Cheminformatics
Gunther Lukat, Björn Sommer, Jens Krüger
2014 — conf
Meta-Metaworkflows for Combining Quantum Chemistry and Molecular Dynamics in the MoSGrid Science Gateway.
IWSG
Sonja Herres-Pawlis, Alexander Hoffmann, Luis de la Garza, Jens Krüger, Sandra Gesing, Richard Grunzke, Wolfgang E. Nagel, Gábor Terstyánszky, Noam Weingarten
2014 — ch.
Molecular Simulation Grid (MosGrid): A Science Gateway Tailored to the Molecular Simulation Community.
Science Gateways for Distributed Computing Infrastructures
Sandra Gesing, Jens Krüger, Richard Grunzke, Luis de la Garza, Sonja Herres-Pawlis, Alexander Hoffmann
2014 J jnl
Standards-based metadata management for molecular simulations.
Concurr. Comput. Pract. Exp.
Richard Grunzke, Sebastian Breuers, Sandra Gesing, Sonja Herres-Pawlis, Martin Kruse, Dirk Blunk, Luis de la Garza, Lars Packschies, Patrick Schäfer, Charlotta Schärfe, Tobias Schlemmer, Thomas Steinke, Bernd Schuller, Ralph Müller-Pfefferkorn, René Jäkel, Wolfgang E. Nagel, Malcolm P. Atkinson, Jens Krüger
2014 — ch.
WS-PGRADE/gUSE-Based Science Gateways in Teaching.
Science Gateways for Distributed Computing Infrastructures
Sílvia Delgado Olabarriaga, Ammar Benabdelkader, Matthan W. A. Caan, Mohammad Mahdi Jaghoori, Jens Krüger, Luis de la Garza, Christopher Mohr, Benjamin Schubert, Anatoli Danezi, Tamás Kiss
2013 J jnl
APL@Voro: A Voronoi-Based Membrane Analysis Tool for GROMACS Trajectories.
J. Chem. Inf. Model.
Gunther Lukat, Jens Krüger, Björn Sommer
2013 J jnl
Development of a pharmacorphore model for pharmacological chaperones targeting mutant trafficking-deficient CNG channels.
J. Cheminformatics
Charlotta Schärfe, Joachim Taeger, Peggy Reuter, Nina M. Fischer, Jens Krüger, Bernd Wissinger, Oliver Kohlbacher
2013 — conf
From the Desktop to the Grid: conversion of KNIME Workflows to gUSE.
IWSG
Luis de la Garza, Jens Krüger, Charlotta Schärfe, Marc Röttig, Stephan Aiche, Knut Reinert, Oliver Kohlbacher
2013 J jnl
The MoSGrid - e-science gateway: molecular simulations in a distributed computing environment.
J. Cheminformatics
Lars Packschies, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Martin Kruse, Ulrich Lang, Ralph Müller-Pfefferkorn, Patrick Schäfer, Tobias Schlemmer, Thomas Steinke, Klaus-Dieter Warzecha, Andreas Zink
2013 — conf
User-Friendly Workflows in Quantum Chemistry.
IWSG
Sonja Herres-Pawlis, Alexander Hoffmann, Sandra Gesing, Jens Krüger, Ákos Balaskó, Péter Kacsuk, Richard Grunzke, Georg Birkenheuer, Lars Packschies
2013 C conf
User-friendly metaworkflows in quantum chemistry.
CLUSTER
Sonja Herres-Pawlis, Alexander Hoffmann, Sandra Gesing, Luis de la Garza, Jens Krüger, Richard Grunzke
2012 J jnl
A Single Sign-On Infrastructure for Science Gateways on a Use Case for Structural Bioinformatics.
J. Grid Comput.
Sandra Gesing, Richard Grunzke, Jens Krüger, Georg Birkenheuer, Martin Wewior, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Sonja Herres-Pawlis, Sebastian Breuers, Ákos Balaskó, Miklos Kozlovszky, Anna Szikszay Fabri, Lars Packschies, Péter Kacsuk, Dirk Blunk, Thomas Steinke, André Brinkmann, Gregor Fels, Ralph Müller-Pfefferkorn, René Jäkel, Oliver Kohlbacher
2012 J jnl
Cost-Aware and SLO-Fulfilling Software as a Service.
J. Grid Comput.
Oliver Niehörster, André Brinkmann, Axel Keller, Christoph Kleineweber, Jens Krüger, Jens Simon
2012 — ed.
HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, Proceedings of HealthGrid 2012, Amsterdam, The Netherlands, 21-23 May 2012.
HealthGrid
Sandra Gesing, Tristan Glatard, Jens Krüger, Sílvia Delgado Olabarriaga, Tony Solomonides, Jonathan C. Silverstein, Johan Montagnat, Alban Gaignard, Dagmar Krefting
2012 J jnl
MoSGrid: efficient data management and a standardized data exchange format for molecular simulations in a grid environment.
J. Cheminformatics
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
2012 J jnl
The GMX-Plugin for the CELLmicrocosmos MembraneEditor.
J. Cheminformatics
Sebastian Rubert, Christian Gamroth, André J. Heissmann, Gunther Lukat, Ralf Rotzoll, Alexander Schäfer, Jens Krüger, Björn Sommer
2012 — conf
Workflow-enhanced conformational analysis of guanidine zinc complexes via a science gateway.
HealthGrid
Sonja Herres-Pawlis, Georg Birkenheuer, André Brinkmann, Sandra Gesing, Richard Grunzke, René Jäkel, Oliver Kohlbacher, Jens Krüger, Ines dos Santos Vieira
2012 — conf
Workshop Series IWSG-Life.
HealthGrid
Sandra Gesing, Jens Krüger
2011 J jnl
CELLmicrocosmos 2.2 MembraneEditor: A Modular Interactive Shape-Based Software Approach To Solve Heterogeneous Membrane Packing Problems.
J. Chem. Inf. Model.
Björn Sommer, Tim Dingersen, Christian Gamroth, Sebastian E. Schneider, Sebastian Rubert, Jens Krüger, Karl-Josef Dietz
2011 J jnl
Coarse-grained and all-atom MD simulations with Gromacs based on CELLmicrocosmos 2.2 model membranes.
J. Cheminformatics
Björn Sommer, Tim Dingersen, Christian Gamroth, André J. Heissmann, Gunther Lukat, Ralf Rotzoll, Sebastian Rubert, Alexander Schäfer, Jens Krüger
2011 — conf
Granular Security for a Science Gateway in Structural Bioinformatics.
IWSG-Life
Sandra Gesing, Richard Grunzke, Ákos Balaskó, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sonja Herres-Pawlis, Péter Kacsuk, Miklos Kozlovszky, Jens Krüger, Lars Packschies, Patrick Schäfer, Bernd Schuller, Johannes Schuster, Thomas Steinke, Anna Szikszay Fabri, Martin Wewior, Ralph Müller-Pfefferkorn, Oliver Kohlbacher
2011 J jnl
Ion permeation simulations by Gromacs - an example of high performance molecular dynamics.
Concurr. Comput. Pract. Exp.
Jens Krüger, Gregor Fels
2011 J jnl
MoSGrid - a molecular simulation grid as a new tool in computational chemistry, biology and material science.
J. Cheminformatics
Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Ines dos Santos Vieira, Gregor Fels, Sandra Gesing, Richard Grunzke, Sonja Herres-Pawlis, Oliver Kohlbacher, Nico Kruber, Jens Krüger, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
2011 J jnl
Molecular simulation grid.
J. Cheminformatics
Jens Krüger, Georg Birkenheuer, Dirk Blunk, Sebastian Breuers, André Brinkmann, Gregor Fels, Sandra Gesing, Richard Grunzke, Oliver Kohlbacher, Nico Kruber, Ulrich Lang, Lars Packschies, Ralph Müller-Pfefferkorn, Sonja Herres-Pawlis, Patrick Schäfer, Hans-Günther Schmalz, Thomas Steinke, Klaus-Dieter Warzecha, Martin Wewior
2010 C conf
Enforcing SLAs in Scientific Clouds.
CLUSTER
Oliver Niehörster, André Brinkmann, Gregor Fels, Jens Krüger, Jens Simon
2010 C conf
Grid-Workflows in Molecular Science.
Software Engineering (Workshops)
Georg Birkenheuer, Sebastian Breuers, André Brinkmann, Dirk Blunk, Gregor Fels, Sandra Gesing, Sonja Herres-Pawlis, Oliver Kohlbacher, Jens Krüger, Lars Packschies
2010 J jnl
Ion permeation through neuronal nAChR ion channel.
J. Cheminformatics
Jens Krüger, Gregor Fels
2009 — conf
Potential of Mean Force of Ion Permeation through alpha7 nAChRIon Channel.
IWPLS
Jens Krüger, Gregor Fels
2008 J jnl
Exploring the conformational space of Vpu from HIV-1: A versatile adaptable protein.
J. Comput. Chem.
Jens Krüger, Wolfgang B. Fischer
2003 J jnl
A concise conceptual model for material data and its applications in process engineering.
Comput. Chem. Eng.
Aidong Yang, Marcus Schlüter, Birgit Bayer, Jens Krüger, Edmund Haberstroh, Wolfgang Marquardt