Jens Allmer - RankMe

30 papers Journal 23Unranked 7

Year	Rank	Type	Title / Venue / Authors
2023	J	`jnl`	Community-wide collaboration is a must to reinstall trust in bioinformatics solutions and biomedical interpretation. J. Integr. Bioinform. Savas Takan, Jens Allmer
2023	J	`jnl`	PriPath: identifying dysregulated pathways from differential gene expression via grouping, scoring, and modeling with an embedded feature selection approach. BMC Bioinform. Malik Yousef, Fatma Ozdemir, Amhar Jaber, Jens Allmer, Burcu Bakir-Gungor
2021	J	`jnl`	Classification of Precursor MicroRNAs from Different Species Based on K-mer Distance Features. Algorithms Malik Yousef, Jens Allmer
2021	J	`jnl`	Novel perspectives for SARS-CoV-2 genome browsing. J. Integr. Bioinform. Visam Gültekin, Jens Allmer
2021	J	`jnl`	Special Issue of the 1st International Applied Bioinformatics Conference (iABC'21). J. Integr. Bioinform. Jens Allmer, Mourad Elloumi, Matteo Comin, Ralf Hofestädt
2021	J	`jnl`	Special issue on COVID-19 data integration opportunities and vaccine development strategies. J. Integr. Bioinform. Jens Allmer
2020	—	`conf`	A Machine Learning-based Approach for the Categorization of MicroRNAs to Their Species of Origin. BIOINFORMATICS Luise Odenthal, Jens Allmer, Malik Yousef
2019	—	`conf`	Classification of Pre-cursor microRNAs from Different Species Using a New Set of Features. DEXA Workshops Malik Yousef, Jens Allmer
2019	J	`jnl`	Towards an Internet of Science. J. Integr. Bioinform. Jens Allmer
2019	J	`jnl`	maTE: discovering expressed interactions between microRNAs and their targets. Bioinform. Malik Yousef, Loai AbdAllah, Jens Allmer
2018	—	`conf`	Species Categorization via MicroRNAs - Based on 3'UTR Target Sites using Sequence Features. BIOINFORMATICS Malik Yousef, Dalit Levy, Jens Allmer
2018	—	`conf`	Visualization and Analysis of miRNAs Implicated in Amyotrophic Lateral Sclerosis Within Gene Regulatory Pathways. GMDS Hamid Hamzeiy, Rabia Suluyayla, Christoph Brinkrolf, Sebastian Jan Janowski, Ralf Hofestädt, Jens Allmer
2017	J	`jnl`	AltORFev facilitates the prediction of alternative open reading frames in eukaryotic mRNAs. Bioinform. Alexey V. Kochetov, Jens Allmer, Alexandra I. Klimenko, Bulat S. Zuraev, Yury G. Matushkin, Sergey A. Lashin
2017	J	`jnl`	Categorization of species based on their microRNAs employing sequence motifs, information-theoretic sequence feature extraction, and EURASIP J. Adv. Signal Process. Malik Yousef, Dawit Nigatu, Dalit Levy, Jens Allmer, Werner Henkel
2017	J	`jnl`	Computational miRNomics - Integrative Approaches. J. Integr. Bioinform. Ralf Hofestädt, Falk Schreiber, Björn Sommer, Jens Allmer
2017	—	`conf`	Distinguishing between MicroRNA Targets from Diverse Species using Sequence Motifs and K-mers. BIOINFORMATICS Malik Yousef, Waleed Khalifa, Ilhan Erkin Acar, Jens Allmer
2017	J	`jnl`	Improving the Quality of Positive Datasets for the Establishment of Machine Learning Models for pre-microRNA Detection. J. Integr. Bioinform. Muserref Duygu Saçar Demirci, Jens Allmer
2017	J	`jnl`	MicroRNA categorization using sequence motifs and k-mers. BMC Bioinform. Malik Yousef, Waleed Khalifa, Ilhan Erkin Acar, Jens Allmer
2017	J	`jnl`	PGMiner: Complete proteogenomics workflow; from data acquisition to result visualization. Inf. Sci. Canan Has, Jens Allmer
2017	J	`jnl`	Visualization and Analysis of MicroRNAs within KEGG Pathways using VANESA. J. Integr. Bioinform. Hamid Hamzeiy, Rabia Suluyayla, Christoph Brinkrolf, Sebastian Jan Janowski, Ralf Hofestädt, Jens Allmer
2016	J	`jnl`	A Machine Learning Approach for MicroRNA Precursor Prediction in Retro-transcribing Virus Genomes. J. Integr. Bioinform. Muserref Duygu Saçar Demirci, Mustafa Toprak, Jens Allmer
2016	J	`jnl`	Editorial: Computational miRNomics. J. Integr. Bioinform. Jens Allmer, Malik Yousef
2016	J	`jnl`	Exact pattern matching: Adapting the Boyer-Moore algorithm for DNA searches. PeerJ Prepr. Jens Allmer
2016	J	`jnl`	Feature Selection Has a Large Impact on One-Class Classification Accuracy for MicroRNAs in Plants. Adv. Bioinformatics Malik Yousef, Muserref Duygu Saçar, Waleed Khalifa, Jens Allmer
2016	—	`conf`	Feature Selection for MicroRNA Target Prediction - Comparison of One-Class Feature Selection Methodologies. BIOINFORMATICS Malik Yousef, Jens Allmer, Waleed Khalifa
2016	J	`jnl`	PGMiner reloaded, fully automated proteogenomic annotation tool linking genomes to proteomes. J. Integr. Bioinform. Canan Has, Sergey A. Lashin, Alexey V. Kochetov, Jens Allmer
2014	J	`jnl`	Computational Prediction of MicroRNAs from Toxoplasma gondii Potentially Regulating the Hosts' Gene Expression. Genom. Proteom. Bioinform. Müserref Duygu Saçar, Caner Bagci, Jens Allmer
2013	J	`jnl`	Can MiRBase Provide Positive Data for Machine Learning for the Detection of MiRNA Hairpins? J. Integr. Bioinform. Muserref Duygu Saçar, Hamid Hamzeiy, Jens Allmer
2013	—	`conf`	Comparison of Four Ab Initio MicroRNA Prediction Tools. BIOINFORMATICS Muserref Duygu Saçar, Jens Allmer
2008	J	`jnl`	2DB: a Proteomics database for storage, analysis, presentation, and retrieval of information from mass spectrometric experiments. BMC Bioinform. Jens Allmer, Sebastian Kuhlgert, Michael Hippler