Jennifer L. Reed

19 papers Journal 19
YearRankTypeTitle / Venue / Authors
2020 J jnl
Model-driven analysis of mutant fitness experiments improves genome-scale metabolic models of Zymomonas mobilis ZM4.
PLoS Comput. Biol.
Wai Kit Ong, Dylan K. Courtney, Shu Pan, Ramon Bonela Andrade, Patricia J. Kiley, Brian F. Pfleger, Jennifer L. Reed
2020 J jnl
Workflow Analysis Driven Recommendations for Integration of Electronically-Enhanced Sexually Transmitted Infection Screening Tools in Pediatric Emergency Departments.
J. Medical Syst.
Jessica L. Howe, Jennifer L. Reed, Katharine T. Adams, Cara Elsholz, Erin M. Augustine, Andrea T. Cruz, Cynthia Mollen, Michelle L. Pickett, Sara Schmidt, Kristin Stukus, Raj M. Ratwani, Monika K. Goyal
2018 J jnl
Integrating proteomic or transcriptomic data into metabolic models using linear bound flux balance analysis.
Bioinform.
Mingyuan Tian, Jennifer L. Reed
2017 J jnl
Improving flux predictions by integrating data from multiple strains.
Bioinform.
Matthew R. Long, Jennifer L. Reed
2015 J jnl
Thermodynamics and H
PLoS Comput. Biol.
Joshua J. Hamilton, Montserrat Calixto Contreras, Jennifer L. Reed
2014 J jnl
Comparisons of Shewanella strains based on genome annotations, modeling, and experiments.
BMC Syst. Biol.
Wai Ong, Trang T. Vu, Klaus N. Lovendahl, Jenna M. Llull, Margrethe H. Serres, Margaret F. Romine, Jennifer L. Reed
2013 J jnl
Inferring ancient metabolism using ancestral core metabolic models of enterobacteria.
BMC Syst. Biol.
David J. Baumler, Bing Ma, Jennifer L. Reed, Nicole T. Perna
2013 J jnl
Mechanistic analysis of multi-omics datasets to generate kinetic parameters for constraint-based metabolic models.
BMC Bioinform.
Cameron Cotten, Jennifer L. Reed
2012 J jnl
Genome-Scale Modeling of Light-Driven Reductant Partitioning and Carbon Fluxes in Diazotrophic Unicellular Cyanobacterium
PLoS Comput. Biol.
Trang T. Vu, Sergey M. Stolyar, Grigoriy E. Pinchuk, Eric A. Hill, Leo A. Kucek, Roslyn N. Brown, Mary S. Lipton, Andrei Osterman, Jim K. Fredrickson, Allan E. Konopka, Alexander S. Beliaev, Jennifer L. Reed
2012 J jnl
Predicting outcomes of steady-state
BMC Syst. Biol.
Jan Schellenberger, Daniel C. Zielinski, Wing Choi, Sunthosh Madireddi, Vasiliy Portnoy, David A. Scott, Jennifer L. Reed, Andrei Osterman, Bernhard Ø. Palsson
2012 J jnl
Shrinking the Metabolic Solution Space Using Experimental Datasets.
PLoS Comput. Biol.
Jennifer L. Reed
2011 J jnl
A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2.
BMC Syst. Biol.
Ines Thiele, Daniel R. Hyduke, Benjamin Steeb, Guy Fankam, Douglas K. Allen, Susanna Bazzani, Pep Charusanti, Feng-Chi Chen, Ronan M. T. Fleming, Chao A. Hsiung, Sigrid C. J. De Keersmaecker, Yu-Chieh Liao, Kathleen Marchal, Monica L. Mo, Emre Özdemir, Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Sara Sigurbjörnsdóttir, Jonas Steinmann, Suresh Sudarsan, Neil Swainston, Inge M. Thijs, Karsten Zengler, Bernhard O. Palsson, Joshua N. Adkins, Dirk Bumann
2011 J jnl
The evolution of metabolic networks of E. coli.
BMC Syst. Biol.
David J. Baumler, Roman G. Peplinski, Jennifer L. Reed, Jeremy D. Glasner, Nicole T. Perna
2011 J jnl
iRsp1095: A genome-scale reconstruction of the Rhodobacter sphaeroides metabolic network.
BMC Syst. Biol.
Saheed Imam, Safak Yilmaz, Ugur Sohmen, Alexander S. Gorzalski, Jennifer L. Reed, Daniel R. Noguera, Timothy J. Donohue
2010 J jnl
An Automated Phenotype-Driven Approach (
PLoS Comput. Biol.
Dipak Barua, Joonhoon Kim, Jennifer L. Reed
2010 J jnl
Constraint-Based Model of
PLoS Comput. Biol.
Grigoriy E. Pinchuk, Eric A. Hill, Oleg V. Geydebrekht, Jessica De Ingeniis, Xiaolin Zhang, Andrei Osterman, James H. Scott, Samantha B. Reed, Margaret F. Romine, Allan E. Konopka, Alexander S. Beliaev, Jim K. Fredrickson, Jennifer L. Reed
2010 J jnl
OptORF: Optimal metabolic and regulatory perturbations for metabolic engineering of microbial strains.
BMC Syst. Biol.
Joonhoon Kim, Jennifer L. Reed
2009 J jnl
Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction.
BMC Syst. Biol.
Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Bernhard Ø. Palsson, Simon Daefler
2007 J jnl
Metabolic Reconstruction and Modeling of Nitrogen Fixation in
PLoS Comput. Biol.
Osbaldo Resendis-Antonio, Jennifer L. Reed, Sergio Encarnación, Julio Collado-Vides, Bernhard Ø. Palsson