Jennifer Hallinan

45 papers B 6C 15Journal 19Unranked 4

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	BioBERT based text mining for incorporating prior knowledge in the inference of genetic network models. Comput. Biol. Medicine Jaskaran Gill, Madhu Chetty, Suryani Lim, Jennifer Hallinan
2024	J	`jnl`	GRAMP: A gene ranking and model prioritisation framework for building consensus genetic networks. Knowl. Based Syst. Hasini Nakulugamuwa Gamage, Madhu Chetty, Suryani Lim, Jennifer Hallinan
2023	B	`conf`	A Robust Ensemble Regression Model for Reconstructing Genetic Networks. IJCNN Hasini Nakulugamuwa Gamage, Madhu Chetty, Suryani Lim, Jennifer Hallinan, Huy Nguyen
2023	J	`jnl`	Knowledge-Based Intelligent Text Simplification for Biological Relation Extraction. Informatics Jaskaran Gill, Madhu Chetty, Suryani Lim, Jennifer Hallinan
2022	J	`jnl`	Combining kinetic orders for efficient S-System modelling of gene regulatory network. Biosyst. Jaskaran Gill, Madhu Chetty, Adrian Shatte, Jennifer Hallinan
2022	J	`jnl`	Computational intelligence and machine learning in bioinformatics and computational biology. Biosyst. Madhu Chetty, Jennifer Hallinan, Gonzalo A. Ruz, Anil Wipat
2022	C	`conf`	Ensemble Regression Modelling for Genetic Network Inference. CIBCB Hasini Nakulugamuwa Gamage, Madhu Chetty, Adrian Shatte, Jennifer Hallinan
2022	J	`jnl`	Filter feature selection based Boolean Modelling for Genetic Network Inference. Biosyst. Hasini Nakulugamuwa Gamage, Madhu Chetty, Adrian Shatte, Jennifer Hallinan
2022	C	`conf`	Integrating steady-state and dynamic gene expression data for improving genetic network modelling. CIBCB Jaskaran Gill, Madhu Chetty, Adrian Shatte, Jennifer Hallinan
2022	J	`jnl`	Modelling the fitness landscapes of a SCRaMbLEd yeast genome. Biosyst. Bill Yang, Goksel Misirli, Anil Wipat, Jennifer Hallinan
2021	C	`conf`	An Efficient Boolean Modelling Approach for Genetic Network Inference. CIBCB Hasini Nakulugamuwa Gamage, Madhu Chetty, Adrian Shatte, Jennifer Hallinan
2021	C	`conf`	Dynamically Regulated Initialization for S-system Modelling of Genetic Networks. CIBCB Jaskaran Gill, Madhu Chetty, Adrian Shatte, Jennifer Hallinan
2021	C	`ed.`	IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2021, Melbourne, Australia, October 13-15, 2021 CIBCB Jennifer Hallinan, Madhu Chetty, Gonzalo Ruz Heredia, Adrian Shatte, Suryani Lim
2021	C	`conf`	Modelling The Fitness Landscapes of a SCRaMbLEd Yeast Genome. CIBCB Bill Yang, Goksel Misirli, Anil Wipat, Jennifer Hallinan
2016	C	`conf`	Computational intelligence for metabolic pathway design: Application to the pentose phosphate pathway. CIBCB James Skelton, Jennifer Hallinan, S. Park, Anil Wipat
2014	J	`jnl`	A distributed computational search strategy for the identification of diagnostics targets: Application to finding aptamer targets for methicillin-resistant staphylococci. J. Integr. Bioinform. Keith Flanagan, Simon J. Cockell, Colin Harwood, Jennifer Hallinan, Sirintra Nakjang, Beth Lawry, Anil Wipat
2014	J	`jnl`	BacillusRegNet: A transcriptional regulation database and analysis platform for Bacillus species. J. Integr. Bioinform. Goksel Misirli, Jennifer Hallinan, Richard Röttger, Jan Baumbach, Anil Wipat
2014	J	`jnl`	Composable Modular Models for Synthetic Biology. ACM J. Emerg. Technol. Comput. Syst. Goksel Misirli, Jennifer Hallinan, Anil Wipat
2014	J	`jnl`	Probabilistic Latent Semantic Analysis Applied to Whole Bacterial Genomes Identifies Common Genomic Features. J. Integr. Bioinform. Julija Rusakovica, Jennifer Hallinan, Anil Wipat, Paolo Zuliani
2014	C	`conf`	Tuning receiver characteristics in bacterial quorum communication: An evolutionary approach using standard virtual biological parts. CIBCB Jennifer Hallinan, Owen Gilfellon, Goksel Misirli, Anil Wipat
2013	J	`jnl`	BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology. J. Integr. Bioinform. Goksel Misirli, Anil Wipat, Joseph Mullen, Katherine James, Matthew R. Pocock, Wendy Smith, Nick Allenby, Jennifer Hallinan
2012	J	`jnl`	Bayesian integration of networks without gold standards. Bioinform. Jochen Weile, Katherine James, Jennifer Hallinan, Simon J. Cockell, Phillip W. Lord, Anil Wipat, Darren J. Wilkinson
2012	—	`conf`	Bridging the Gap between Design and Reality - A Dual Evolutionary Strategy for the Design of Synthetic Genetic Circuits. BIOINFORMATICS Jennifer Hallinan, S. Park, Anil Wipat
2012	J	`jnl`	Microbase2.0: A Generic Framework for Computationally Intensive Bioinformatics Workflows in the Cloud. J. Integr. Bioinform. Keith Flanagan, Sirintra Nakjang, Jennifer Hallinan, Colin Harwood, Robert P. Hirt, Matthew R. Pocock, Anil Wipat
2011	J	`jnl`	Customizable views on semantically integrated networks for systems biology. Bioinform. Jochen Weile, Matthew R. Pocock, Simon J. Cockell, Phillip W. Lord, James M. Dewar, Eva-Maria Holstein, Darren J. Wilkinson, David A. Lydall, Jennifer Hallinan, Anil Wipat
2011	J	`jnl`	Model annotation for synthetic biology: automating model to nucleotide sequence conversion. Bioinform. Goksel Misirli, Jennifer Hallinan, Tommy Yu, James R. Lawson, Sarala M. Wimalaratne, Mike T. Cooling, Anil Wipat
2010	J	`jnl`	Standard virtual biological parts: a repository of modular modeling components for synthetic biology. Bioinform. Mike T. Cooling, V. Rouilly, Goksel Misirli, James R. Lawson, Tommy Yu, Jennifer Hallinan, Anil Wipat
2009	C	`conf`	Clustering incorporating shortest paths identifies relevant modules in functional interaction networks. CIBCB Jennifer Hallinan, Matthew R. Pocock, Stephen G. Addinall, David A. Lydall, Anil Wipat
2009	J	`jnl`	Evolving gene regulatory networks. Biosyst. Yaochu Jin, Jennifer Hallinan
2009	—	`conf`	Integration of Full-Coverage Probabilistic Functional Networks with Relevance to Specific Biological Processes. DILS Katherine James, Anil Wipat, Jennifer Hallinan
2008	C	`conf`	Network motifs in context: An exploration of the evolution of oscillatory dynamics in transcriptional networks. CIBCB Jennifer Hallinan, Anil Wipat
2007	C	`conf`	Motifs and Modules in Fractured Functional Yeast Networks. CIBCB Jennifer Hallinan, Anil Wipat
2006	C	`conf`	Clustering and Cross-talk in a Yeast Functional Interaction Network. CIBCB Jennifer Hallinan, Anil Wipat
2006	B	`conf`	Effects of Constitutive Gene Expression on the Dynamics of Random Boolean Networks. IEEE Congress on Evolutionary Computation Jennifer Hallinan, Daniel R. Bradley, Janet Wiles
2006	B	`conf`	Effects of an RNA control layer on the state space of Boolean models of genetic regulatory networks. IEEE Congress on Evolutionary Computation Jennifer Hallinan, Daniel R. Bradley, John S. Mattick, Janet Wiles
2005	C	`conf`	Evolving Neural Networks for the Classification of Malignancy Associated Changes. IDEAL Jennifer Hallinan
2005	C	`conf`	Network Motifs, Feedback Loops and the Dynamics of Genetic Regulatory Networks. CIBCB Jennifer Hallinan, Paul T. Jackway
2005	—	`conf`	There's more to a model than code: understanding and formalizing GECCO Workshops Janet Wiles, Nicholas Geard, James E. M. Watson, Kai Willadsen, John S. Mattick, Daniel R. Bradley, Jennifer Hallinan
2004	C	`conf`	Cluster analysis of the p53 genetic regulatory network: topology and biology. CIBCB Jennifer Hallinan
2004	B	`conf`	Evolving Genetic Regulatory Networks Using an Artificial Genome. APBC Jennifer Hallinan, Janet Wiles
2003	B	`conf`	Self-Organization Leads to Hierarchical Modularity in an Internet Community. KES Jennifer Hallinan
2002	B	`conf`	A comparison of neutral landscapes - NK, NKp and NKq. IEEE Congress on Evolutionary Computation Nicholas Geard, Janet Wiles, Jennifer Hallinan, Bradley Tonkes, Benjamin Skellett
2001	J	`jnl`	Guest editorial - evolutionary computation and cognitive science: modeling evolution and evolving models. IEEE Trans. Evol. Comput. Janet Wiles, Jennifer Hallinan
2000	—	`—`	Detection of malignancy associated changes in cervical cells using statistical and evolutionary computation techniques Jennifer Hallinan
1998	—	`conf`	Co-operative Evolution of a Neural Classifier and Feature Subset. SEAL Jennifer Hallinan, Paul T. Jackway