Jennifer A. Doherty

14 papers Misc 1Journal 12Unranked 1

Year	Rank	Type	Title / Venue / Authors
2024	J	`jnl`	Deep learning uncertainty quantification for clinical text classification. J. Biomed. Informatics Alina Peluso, Ioana Danciu, Hong-Jun Yoon, Jamaludin Mohd-Yusof, Tanmoy Bhattacharya, Adam Spannaus, Noah Schaefferkoetter, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi, Shang Gao
2024	J	`jnl`	Development of message passing-based graph convolutional networks for classifying cancer pathology reports. BMC Medical Informatics Decis. Mak. Hong-Jun Yoon, Hilda B. Klasky, Andrew E. Blanchard, James Blair Christian, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
2022	J	`jnl`	A Keyword-Enhanced Approach to Handle Class Imbalance in Clinical Text Classification. IEEE J. Biomed. Health Informatics Andrew E. Blanchard, Shang Gao, Hong-Jun Yoon, James Blair Christian, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
2022	J	`jnl`	Class imbalance in out-of-distribution datasets: Improving the robustness of the TextCNN for the classification of rare cancer types. J. Biomed. Informatics Kevin De Angeli, Shang Gao, Ioana Danciu, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Stephen M. Schwartz, Charles Wiggins, Mark Damesyn, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi, Hong-Jun Yoon
2022	J	`jnl`	Iam hiQ - a novel pair of accuracy indices for imputed genotypes. BMC Bioinform. Albert Rosenberger, Viola Tozzi, Heike Bickeböller, Rayjean J. Hung, David C. Christiani, Neil E. Caporaso, Geoffrey Liu, Stig E. Bojesen, Loic Le Marchand, Demetrios Albanes, Melinda C. Aldrich, Adonina Tardon, Guillermo Fernández-Tardón, Gad Rennert, John K. Field, Mike Davies, Triantafillos Liloglou, Lambertus A. Kiemeney, Philip Lazarus, Aage Haugen, Shanbeh Zienolddiny, Stephen Lam, Matthew B. Schabath, Angeline S. Andrew, Eric J. Duell, Susanne M. Arnold, Hans Brunnström, Olle Melander, Gary E. Goodman, Chu Chen, Jennifer A. Doherty, Marion Dawn Teare, Angela Cox, Penella J. Woll, Angela Risch, Thomas R. Muley, Mikael Johansson, Paul Brennan, Maria Teresa Landi, Sanjay Shete, Christopher I. Amos
2021	J	`jnl`	Deep active learning for classifying cancer pathology reports. BMC Bioinform. Kevin De Angeli, Shang Gao, Mohammed M. Alawad, Hong-Jun Yoon, Noah Schaefferkoetter, Xiao-Cheng Wu, Eric B. Durbin, Jennifer A. Doherty, Antoinette Stroup, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
2021	J	`jnl`	Integration of Domain Knowledge using Medical Knowledge Graph Deep Learning for Cancer Phenotyping. CoRR Mohammed M. Alawad, Shang Gao, Mayanka Chandra Shekar, S. M. Shamimul Hasan, James Blair Christian, Xiao-Cheng Wu, Eric B. Durbin, Jennifer A. Doherty, Antoinette Stroup, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi
2021	J	`jnl`	Limitations of Transformers on Clinical Text Classification. IEEE J. Biomed. Health Informatics Shang Gao, Mohammed M. Alawad, M. Todd Young, John Gounley, Noah Schaefferkoetter, Hong-Jun Yoon, Xiao-Cheng Wu, Eric B. Durbin, Jennifer A. Doherty, Antoinette Stroup, Linda Coyle, Georgia D. Tourassi
2020	J	`jnl`	Accelerated training of bootstrap aggregation-based deep information extraction systems from cancer pathology reports. J. Biomed. Informatics Hong-Jun Yoon, Hilda B. Klasky, John P. Gounley, Mohammed M. Alawad, Shang Gao, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Linda Coyle, Lynne Penberthy, James Blair Christian, Georgia D. Tourassi
2020	—	`conf`	Privacy-Preserving Knowledge Transfer with Bootstrap Aggregation of Teacher Ensembles. Poly/DMAH@VLDB Hong-Jun Yoon, Hilda B. Klasky, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer A. Doherty, Linda Coyle, Lynne Penberthy, Christopher B. Stanley, James Blair Christian, Georgia D. Tourassi
2020	J	`jnl`	Why I'm not Answering: Understanding Determinants of Classification of an Abstaining Classifier for Cancer Pathology Reports. CoRR Sayera Dhaubhadel, Jamaludin Mohd-Yusof, Kumkum Ganguly, Gopinath Chennupati, Sunil Thulasidasan, Nicolas W. Hengartner, Brent J. Mumphrey, Eric B. Durbin, Jennifer A. Doherty, Mireille Lemieux, Noah Schaefferkoetter, Georgia D. Tourassi, Linda Coyle, Lynne Penberthy, Benjamin McMahon, Tanmoy Bhattacharya
2019	J	`jnl`	Assessing data availability and quality within an electronic health record system through external validation against an external clinical data source. BMC Medical Informatics Decis. Mak. Ellen L. Palmer, John H. Higgins, Saeed Hassanpour, James Sargent, Christina M. Robinson, Jennifer A. Doherty, Tracy Onega
2019	J	`jnl`	Building a tobacco user registry by extracting multiple smoking behaviors from clinical notes. BMC Medical Informatics Decis. Mak. Ellen L. Palmer, Saeed Hassanpour, John H. Higgins, Jennifer A. Doherty, Tracy Onega
2018	Misc	`conf`	Functional network community detection can disaggregate and filter multiple underlying pathways in enrichment analyses. PSB Lia X. Harrington, Gregory P. Way, Jennifer A. Doherty, Casey S. Greene