Jeffrey D. Varner

14 papers Misc 1Journal 13
YearRankTypeTitle / Venue / Authors
2026 J jnl
BSTModelKit.jl: A Julia Package for Constructing, Solving, and Analyzing Biochemical Systems Theory Models.
CoRR
Sandra Vadhin, Jeffrey D. Varner
2026 J jnl
Conditioning Protein Generation via Hopfield Pattern Multiplicity.
CoRR
Jeffrey D. Varner
2026 J jnl
Hybrid Hidden Markov Model for Modeling Equity Excess Growth Rate Dynamics: A Discrete-State Approach with Jump-Diffusion.
CoRR
Abdulrahman Alswaidan, Jeffrey D. Varner
2026 J jnl
ParetoEnsembles.jl: A Julia Package for Multiobjective Parameter Estimation Using Pareto Optimal Ensemble Techniques.
CoRR
Jeffrey D. Varner
2026 J jnl
Stochastic Attention via Langevin Dynamics on the Modern Hopfield Energy.
CoRR
Abdulrahman Alswaidan, Jeffrey D. Varner
2026 J jnl
Training-Free Generation of Protein Sequences from Small Family Alignments via Stochastic Attention.
CoRR
Jeffrey D. Varner
2018 J jnl
Dynamic Optimization with Particle Swarms (DOPS): a meta-heuristic for parameter estimation in biochemical models.
BMC Syst. Biol.
Adithya Sagar, Rachel LeCover, Christine Ann Shoemaker, Jeffrey D. Varner
2018 J jnl
Multi-scale computational study of the Warburg effect, reverse Warburg effect and glutamine addiction in solid tumors.
PLoS Comput. Biol.
Mengrou Shan, David Dai, Arunodai Vudem, Jeffrey D. Varner, Abraham Duncan Stroock
2017 J jnl
JuPOETs: a constrained multiobjective optimization approach to estimate biochemical model ensembles in the Julia programming language.
BMC Syst. Biol.
David M. Bassen, Michael Vilkhovoy, Mason Minot, Jonathan T. Butcher, Jeffrey D. Varner
2016 J jnl
Population Heterogeneity in the Epithelial to Mesenchymal Transition Is Controlled by NFAT and Phosphorylated Sp1.
PLoS Comput. Biol.
Russell Gould, David M. Bassen, Anirikh Chakrabarti, Jeffrey D. Varner, Jonathan T. Butcher
2011 J jnl
Computational Modeling and Analysis of Insulin Induced Eukaryotic Translation Initiation.
PLoS Comput. Biol.
Joshua Lequieu, Anirikh Chakrabarti, Satyaprakash Nayak, Jeffrey D. Varner
2007 J jnl
Computationally Derived Points of Fragility of a Human Cascade Are Consistent with Current Therapeutic Strategies.
PLoS Comput. Biol.
Deyan Luan, Michael Zai, Jeffrey D. Varner
2005 J jnl
Large-scale inference of the transcriptional regulation of Bacillus subtilis.
Comput. Chem. Eng.
Anshuman Gupta, Jeffrey D. Varner, Costas D. Maranas
2004 Misc conf
A Mixed Integer Linear Programming (MILP) Framework for Inferring Time Delay in Gene Regulatory Networks.
Pacific Symposium on Biocomputing
Madhukar S. Dasika, Anshuman Gupta, Costas D. Maranas, Jeffrey D. Varner