Jeffrey A. Thompson

16 papers B 1C 1Misc 2Journal 7Unranked 5
YearRankTypeTitle / Venue / Authors
2026 J jnl
A stochastic approach to k-nearest neighbors search using a fixed radius method.
Comput. Stat.
Brahian Cano Urrego, Alexander Alsup, Jeffrey A. Thompson, Devin C. Koestler
2025 J jnl
AMEND 2.0: module identification and multi-omic data integration with multiplex-heterogeneous graphs.
BMC Bioinform.
Samuel Boyd, Chad Slawson, Jeffrey A. Thompson
2023 J jnl
AMEND: active module identification using experimental data and network diffusion.
BMC Bioinform.
Samuel Boyd, Chad Slawson, Jeffrey A. Thompson
2022 J jnl
A Novel Framework for the Identification of Reference DNA Methylation Libraries for Reference-Based Deconvolution of Cellular Mixtures.
Frontiers Bioinform.
Shelby Bell-Glenn, Jeffrey A. Thompson, Lucas A. Salas, Devin C. Koestler
2022 J jnl
Assessing equivalent and inverse change in genes between diverse experiments.
Frontiers Bioinform.
Lisa Neums, Devin C. Koestler, Qing Xia, Jinxiang Hu, Shachi Patel, Shelby Bell-Glenn, Dong Pei, Bo Zhang, Samuel Boyd, Prabhakar Chalise, Jeffrey A. Thompson
2020 Misc conf
Improving Survival Prediction Using a Novel Feature Selection and Feature Reduction FrameworkBased on the Integration of Clinical and Molecular Data.
PSB
Lisa Neums, Richard Meier, Devin C. Koestler, Jeffrey A. Thompson
2019 J jnl
pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS).
BMC Bioinform.
Stefan Graw, Rosalyn Henn, Jeffrey A. Thompson, Devin C. Koestler
2018 J jnl
Relevant Word Order Vectorization for Improved Natural Language Processing in Electronic Healthcare Records.
CoRR
Jeffrey A. Thompson, Jinxiang Hu, Dinesh Pal Mudaranthakam, David Streeter, Lisa Neums, Michele Park, Devin C. Koestler, Byron Gajewski, Matthew S. Mayo
2017 Misc conf
A Methylation-to-Expression Feature Model for Generating Accurate Prognostic Risk Scores and Identifying Disease Targets in Clear Cell Kidney Cancer.
PSB
Jeffrey A. Thompson, Carmen J. Marsit
2014 — conf
A workflow for the computational identification of candidate regulatory elements in noncoding DNA.
BCB
Jeffrey A. Thompson, Craig R. Lessard, Samuel McFarland, Robert L. Morris, Clare Bates Congdon
2014 — conf
An automated pipeline for discovering gene expression patterns associated with increased cancer survival time.
BCB
Jeffrey A. Thompson, Christine Duarte, Peter Marks, Clare Bates Congdon
2014 B conf
GAMI-CRM: Using de novo motif inference to detect cis-regulatory modules.
IEEE Congress on Evolutionary Computation
Jeffrey A. Thompson, Clare Bates Congdon
2013 C conf
An exploration into improving DNA motif inference by looking for highly conserved core regions.
CIBCB
Jeffrey A. Thompson, Clare Bates Congdon
2013 — conf
Initial Results In Using de Novo Motif Inference to Detect Cis-Regulatory Modules.
BCB
Jeffrey A. Thompson, Clare Bates Congdon
2012 — conf
Trade-offs using GAMID for the inference of DNA motifs that are represented in only a subset of sequences of interest.
GECCO (Companion)
Jeffrey A. Thompson
2011 — conf
Using genetic algorithms for the inference of motifs that are represented in only a subset of sequences of interest.
BIBM Workshops
Jeffrey A. Thompson, Clare Bates Congdon