Jeff W. Lichtman

43 papers A* 2Journal 34Unranked 6
YearRankTypeTitle / Venue / Authors
2025 J jnl
Forecasting Whole-Brain Neuronal Activity from Volumetric Video.
CoRR
Alexander Immer, Jan-Matthis Lueckmann, Alex Bo-Yuan Chen, Peter H. Li, Mariela D. Petkova, Nirmala A. Iyer, Aparna Dev, Gudrun Ihrke, Woohyun Park, Alyson Petruncio, Aubrey Weigel, Wyatt Korff, Florian Engert, Jeff W. Lichtman, Misha B. Ahrens, Viren Jain, Michal Januszewski
2025 J jnl
Frenet-Serret Frame-Based Decomposition for Part Segmentation of 3-D Curvilinear Structures.
IEEE Trans. Medical Imaging
Shixuan Gu, Jason Ken Adhinarta, Mikhail Bessmeltsev, Jiancheng Yang, Yongjie Jessica Zhang, Wenjie Yin, Daniel Berger, Jeff W. Lichtman, Hanspeter Pfister, Donglai Wei
2025 J jnl
Quantifying axonal features of human superficial white matter from three-dimensional multibeam serial electron microscopy data assisted by deep learning.
NeuroImage
Qiyuan Tian, Chanon Ngamsombat, Hong-Hsi Lee, Daniel R. Berger, Yuelong Wu, Qiuyun Fan, Berkin Bilgic, Ziyu Li, Dmitry S. Novikov, Els Fieremans, Bruce R. Rosen, Jeff W. Lichtman, Susie Yi Huang
2025 J jnl
Sparse Graph Reconstruction and Seriation for Large-Scale Image Stacks.
CoRR
Fuming Yang, Yaron Meirovitch, Jeff W. Lichtman
2025 J jnl
Towards 1000-fold Electron Microscopy Image Compression for Connectomics via VQ-VAE with Transformer Prior.
CoRR
Fuming Yang, Yicong Li, Hanspeter Pfister, Jeff W. Lichtman, Yaron Meirovitch
2025 J jnl
ZAPBench: A Benchmark for Whole-Brain Activity Prediction in Zebrafish.
CoRR
Jan-Matthis Lueckmann, Alexander Immer, Alex Bo-Yuan Chen, Peter H. Li, Mariela D. Petkova, Nirmala A. Iyer, Luuk Willem Hesselink, Aparna Dev, Gudrun Ihrke, Woohyun Park, Alyson Petruncio, Aubrey Weigel, Wyatt Korff, Florian Engert, Jeff W. Lichtman, Misha B. Ahrens, Michal Januszewski, Viren Jain
2024 J jnl
- Visual Analysis of Neuronal Connectivity Motifs.
IEEE Trans. Vis. Comput. Graph.
Jakob Troidl, Simon Warchol, Jinhan Choi, Jordan Matelsky, Nagaraju Dhanyasi, Xueying Wang, Brock A. Wester, Donglai Wei, Jeff W. Lichtman, Hanspeter Pfister, Johanna Beyer
2024 — conf
EM-Compressor: Electron Microscopy Image Compression in Connectomics with Variational Autoencoders.
MOVI@MICCAI
Yicong Li, Core Francisco Park, Daniel Xenes, Caitlyn Bishop, Daniel R. Berger, Aravinthan D. T. Samuel, Brock A. Wester, Jeff W. Lichtman, Hanspeter Pfister, Wanhua Li, Yaron Meirovitch
2024 J jnl
FreSeg: Frenet-Frame-based Part Segmentation for 3D Curvilinear Structures.
CoRR
Shixuan Gu, Jason Ken Adhinarta, Mikhail Bessmeltsev, Jiancheng Yang, Jessica Zhang, Daniel R. Berger, Jeff W. Lichtman, Hanspeter Pfister, Donglai Wei
2022 J jnl
Connectomics Annotation Metadata Standardization for Increased Accessibility and Queryability.
Frontiers Neuroinformatics
Morgan Sanchez, Dymon Moore, Erik C. Johnson, Brock A. Wester, Jeff W. Lichtman, William R. Gray Roncal
2022 J jnl
Scalable Biologically-Aware Skeleton Generation for Connectomic Volumes.
IEEE Trans. Medical Imaging
Brian Matejek, Tim Franzmeyer, Donglai Wei, Xueying Wang, Jinglin Zhao, Kálmán Palágyi, Jeff W. Lichtman, Hanspeter Pfister
2021 J jnl
Learning Guided Electron Microscopy with Active Acquisition.
CoRR
Lu Mi, Hao Wang, Yaron Meirovitch, Richard Schalek, Srinivas C. Turaga, Jeff W. Lichtman, Aravinthan D. T. Samuel, Nir Shavit
2021 J jnl
VICE: Visual Identification and Correction of Neural Circuit Errors.
Comput. Graph. Forum
Felix Gonda, Xueying Wang, Johanna Beyer, Markus Hadwiger, Jeff W. Lichtman, Hanspeter Pfister
2021 J jnl
VICE: Visual Identification and Correction of Neural Circuit Errors.
CoRR
Felix Gonda, Xueying Wang, Johanna Beyer, Markus Hadwiger, Jeff W. Lichtman, Hanspeter Pfister
2020 — conf
Learning Guided Electron Microscopy with Active Acquisition.
MICCAI (5)
Lu Mi, Hao Wang, Yaron Meirovitch, Richard Schalek, Srinivas C. Turaga, Jeff W. Lichtman, Aravinthan D. T. Samuel, Nir Shavit
2020 — conf
MitoEM Dataset: Large-Scale 3D Mitochondria Instance Segmentation from EM Images.
MICCAI (5)
Donglai Wei, Zudi Lin, Daniel Franco-Barranco, Nils Wendt, Xingyu Liu, Wenjie Yin, Xin Huang, Aarush Gupta, Won-Dong Jang, Xueying Wang, Ignacio Arganda-Carreras, Jeff W. Lichtman, Hanspeter Pfister
2019 J jnl
A Topological Nomenclature for 3D Shape Analysis in Connectomics.
CoRR
Abhimanyu Talwar, Zudi Lin, Donglai Wei, Yuesong Wu, Bowen Zheng, Jinglin Zhao, Won-Dong Jang, Xueying Wang, Jeff W. Lichtman, Hanspeter Pfister
2019 J jnl
Multispectral tracing in densely labeled mouse brain with nTracer.
Bioinform.
Douglas H. Roossien, Benjamin V. Sadis, Yan Yan, John M. Webb, Lia Y. Min, Aslan S. Dizaji, Luke J. Bogart, Cristina Mazuski, Robert S. Huth, Johanna S. Stecher, Sriakhila Akula, Fred Y. Shen, Ye Li, Tingxin Xiao, Madeleine Vandenbrink, Jeff W. Lichtman, Takao K. Hensch, Erik D. Herzog, Dawen Cai
2018 — conf
Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets.
ECCV Workshops (6)
Toufiq Parag, Daniel R. Berger, Lee Kamentsky, Benedikt Staffler, Donglai Wei, Moritz Helmstaedter, Jeff W. Lichtman, Hanspeter Pfister
2018 J jnl
Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets.
CoRR
Toufiq Parag, Daniel R. Berger, Lee Kamentsky, Benedikt Staffler, Donglai Wei, Moritz Helmstaedter, Jeff W. Lichtman, Hanspeter Pfister
2018 A* conf
Guided Proofreading of Automatic Segmentations for Connectomics.
CVPR
Daniel Haehn, Verena Kaynig, James Tompkin, Jeff W. Lichtman, Hanspeter Pfister
2017 J jnl
Anisotropic EM Segmentation by 3D Affinity Learning and Agglomeration.
CoRR
Toufiq Parag, Fabian Tschopp, William Grisaitis, Srinivas C. Turaga, Xuewen Zhang, Brian Matejek, Lee Kamentsky, Jeff W. Lichtman, Hanspeter Pfister
2017 J jnl
Guided Proofreading of Automatic Segmentations for Connectomics.
CoRR
Daniel Haehn, Verena Kaynig, James Tompkin, Jeff W. Lichtman, Hanspeter Pfister
2017 — conf
ICON: An interactive approach to train deep neural networks for segmentation of neuronal structures.
ISBI
Felix Gonda, Verena Kaynig, Thouis R. Jones, Daniel Haehn, Jeff W. Lichtman, Toufiq Parag, Hanspeter Pfister
2017 J jnl
Morphological Error Detection in 3D Segmentations.
CoRR
David Rolnick, Yaron Meirovitch, Toufiq Parag, Hanspeter Pfister, Viren Jain, Jeff W. Lichtman, Edward S. Boyden, Nir Shavit
2017 J jnl
Scalable Interactive Visualization for Connectomics.
Informatics
Daniel Haehn, John Hoffer, Brian Matejek, Adi Suissa-Peleg, Ali K. Al-Awami, Lee Kamentsky, Felix Gonda, Eagon Meng, William Zhang, Richard Schalek, Alyssa Wilson, Toufiq Parag, Johanna Beyer, Verena Kaynig, Thouis R. Jones, James Tompkin, Markus Hadwiger, Jeff W. Lichtman, Hanspeter Pfister
2016 J jnl
NeuroBlocks - Visual Tracking of Segmentation and Proofreading for Large Connectomics Projects.
IEEE Trans. Vis. Comput. Graph.
Ali K. Al-Awami, Johanna Beyer, Daniel Haehn, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister, Markus Hadwiger
2016 — conf
Registering large volume serial-section electron microscopy image sets for neural circuit reconstruction using FFT signal whitening.
AIPR
Arthur W. Wetzel, Jennifer Bakal, Markus Dittrich, David G. C. Hildebrand, Josh L. Morgan, Jeff W. Lichtman
2016 J jnl
Registering large volume serial-section electron microscopy image sets for neural circuit reconstruction using FFT signal whitening.
CoRR
Arthur W. Wetzel, Jennifer Bakal, Markus Dittrich, David G. C. Hildebrand, Josh L. Morgan, Jeff W. Lichtman
2016 J jnl
RhoanaNet Pipeline: Dense Automatic Neural Annotation.
CoRR
Seymour Knowles-Barley, Verena Kaynig, Thouis Ray Jones, Alyssa Wilson, Joshua Morgan, Dongil Lee, Daniel R. Berger, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister
2014 J jnl
Automatic Annotation of Axoplasmic Reticula in Pursuit of Connectomes using High-Resolution Neural EM Data.
CoRR
Ayushi Sinha, William R. Gray Roncal, Narayanan Kasthuri, Jeff W. Lichtman, Randal C. Burns, Michael M. Kazhdan
2014 J jnl
Automatic Annotation of Axoplasmic Reticula in Pursuit of Connectomes.
CoRR
Ayushi Sinha, William R. Gray Roncal, Narayanan Kasthuri, Ming Chuang, Priya Manavalan, Dean Kleissas, Joshua T. Vogelstein, R. Jacob Vogelstein, Randal C. Burns, Jeff W. Lichtman, Michael M. Kazhdan
2014 J jnl
Design and Evaluation of Interactive Proofreading Tools for Connectomics.
IEEE Trans. Vis. Comput. Graph.
Daniel Haehn, Seymour Knowles-Barley, Mike Roberts, Johanna Beyer, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister
2014 J jnl
NeuroLines: A Subway Map Metaphor for Visualizing Nanoscale Neuronal Connectivity.
IEEE Trans. Vis. Comput. Graph.
Ali K. Al-Awami, Johanna Beyer, Hendrik Strobelt, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister, Markus Hadwiger
2014 J jnl
Volumetric Exploitation of Synaptic Information using Context Localization and Evaluation.
CoRR
William R. Gray Roncal, Verena Kaynig-Fittkau, Narayanan Kasthuri, Daniel R. Berger, Joshua T. Vogelstein, Lindsey R. Fernandez, Jeff W. Lichtman, R. Jacob Vogelstein, Hanspeter Pfister, Gregory D. Hager
2013 J jnl
A Collaborative Digital Pathology System for Multi-Touch Mobile and Desktop Computing Platforms.
Comput. Graph. Forum
Won-Ki Jeong, Jens Schneider, Axel Hansen, Manhee Lee, Stephen G. Turney, Beverly E. Faulkner-Jones, Jonathan L. Hecht, R. Najarian, Eric Yee, Jeff W. Lichtman, Hanspeter Pfister
2013 J jnl
ConnectomeExplorer: Query-Guided Visual Analysis of Large Volumetric Neuroscience Data.
IEEE Trans. Vis. Comput. Graph.
Johanna Beyer, Ali K. Al-Awami, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister, Markus Hadwiger
2013 J jnl
Exploring the Connectome: Petascale Volume Visualization of Microscopy Data Streams.
IEEE Computer Graphics and Applications
Johanna Beyer, Markus Hadwiger, Ali K. Al-Awami, Won-Ki Jeong, Narayanan Kasthuri, Jeff W. Lichtman, Hanspeter Pfister
2012 J jnl
Local tracing of curvilinear structures in volumetric color images: Application to the Brainbow analysis.
J. Vis. Commun. Image Represent.
Erhan Bas, Deniz Erdogmus, R. W. Draft, Jeff W. Lichtman
2010 A* conf
Boundary Learning by Optimization with Topological Constraints.
CVPR
Viren Jain, Benjamin Bollmann, Mark Richardson, Daniel R. Berger, Moritz Helmstaedter, Kevin L. Briggman, Winfried Denk, Jared B. Bowden, John M. Mendenhall, Wickliffe C. Abraham, Kristen M. Harris, Narayanan Kasthuri, Ken J. Hayworth, Richard Schalek, Juan Carlos Tapia, Jeff W. Lichtman, H. Sebastian Seung
2009 J jnl
Automated Axon Tracking of 3D Confocal Laser Scanning Microscopy Images Using Guided Probabilistic Region Merging.
Neuroinformatics
Ranga Srinivasan, Xiaobo Zhou, Eric L. Miller, Ju Lu, Jeff W. Lichtman, Stephen T. C. Wong
2009 — ch.
Discovering the wiring diagram of the brain.
The Fourth Paradigm
Jeff W. Lichtman, R. Clay Reid, Hanspeter Pfister, Michael F. Cohen
2006 J jnl
Repulsive force based snake model to segment and track neuronal axons in 3D microscopy image stacks.
NeuroImage
Hongmin Cai, Xiaoyin Xu, Ju Lu, Jeff W. Lichtman, S. P. Yung, Stephen T. C. Wong