Jean Yee Hwa Yang

32 papers A* 1B 1Journal 29Unranked 1

Year	Rank	Type	Title / Venue / Authors
2025	J	`jnl`	CLUEY enables knowledge-guided clustering and cell type detection from single-cell omics data. Bioinform. Daniel Kim, Carissa Chen, Lijia Yu, Jean Yee Hwa Yang, Pengyi Yang
2025	J	`jnl`	The current landscape and emerging challenges of benchmarking single-cell methods. Briefings Bioinform. Yue Cao, Lijia Yu, Marni Torkel, Sanghyun Kim, Yingxin Lin, Pengyi Yang, Terence P. Speed, Shila Ghazanfar, Jean Yee Hwa Yang
2023	J	`jnl`	Ensemble deep learning of embeddings for clustering multimodal single-cell omics data. Bioinform. Lijia Yu, Chunlei Liu, Jean Yee Hwa Yang, Pengyi Yang
2023	J	`jnl`	scSTAR reveals hidden heterogeneity with a real-virtual cell pair structure across conditions in single-cell RNA sequencing data. Briefings Bioinform. Jie Hao, Jiawei Zou, Jiaqiang Zhang, Ke Chen, Duojiao Wu, Wei Cao, Guoguo Shang, Jean Yee Hwa Yang, KongFatt Wong-Lin, Hourong Sun, Zhen Zhang, Xiangdong Wang, Wantao Chen, Xin Zou
2022	J	`jnl`	Cross-Platform Omics Prediction procedure: a statistical machine learning framework for wider implementation of precision medicine. npj Digit. Medicine Kevin Y. X. Wang, Gulietta M. Pupo, Varsha Tembe, Ellis Patrick, Dario Strbenac, Sarah-Jane Schramm, John F. Thompson, Richard A. Scolyer, Samuel Müller, Garth Tarr, Graham J. Mann, Jean Yee Hwa Yang
2022	J	`jnl`	The health digital twin to tackle cardiovascular disease - a review of an emerging interdisciplinary field. npj Digit. Medicine Genevieve Coorey, Gemma A. Figtree, David F. Fletcher, Victoria J. Snelson, Stephen T. Vernon, David S. Winlaw, Stuart M. Grieve, Alistair Lee McEwan, Jean Yee Hwa Yang, Pierre Qian, Kieran O'Brien, Jessica Orchard, Jinman Kim, Sanjay Patel, Julie Redfern
2022	J	`jnl`	scFeatures: multi-view representations of single-cell and spatial data for disease outcome prediction. Bioinform. Yue Cao, Yingxin Lin, Ellis Patrick, Pengyi Yang, Jean Yee Hwa Yang
2020	J	`jnl`	CiteFuse enables multi-modal analysis of CITE-seq data. Bioinform. Hani Jieun Kim, Yingxin Lin, Thomas Andrew Geddes, Jean Yee Hwa Yang, Pengyi Yang
2020	J	`jnl`	Ensemble deep learning in bioinformatics. Nat. Mach. Intell. Yue Cao, Thomas Andrew Geddes, Jean Yee Hwa Yang, Pengyi Yang
2020	J	`jnl`	LC-N2G: a local consistency approach for nutrigenomics data analysis. BMC Bioinform. Xiangnan Xu, Samantha Solon-Biet, Alistair M. Senior, David Raubenheimer, Stephen J. Simpson, Luigi Fontana, Samuel Müller, Jean Yee Hwa Yang
2019	J	`jnl`	AdaSampling for Positive-Unlabeled and Label Noise Learning With Bioinformatics Applications. IEEE Trans. Cybern. Pengyi Yang, John T. Ormerod, Wei Liu, Chendong Ma, Albert Y. Zomaya, Jean Yee Hwa Yang
2019	J	`jnl`	An Uncertainty Visual Analytics Framework for fMRI Functional Connectivity. Neuroinformatics Michael de Ridder, Karsten Klein, Jean Yee Hwa Yang, Pengyi Yang, Jim Lagopoulos, Ian B. Hickie, Max Bennett, Jinman Kim
2019	J	`jnl`	Autoencoder-based cluster ensembles for single-cell RNA-seq data analysis. BMC Bioinform. Thomas Andrew Geddes, Taiyun Kim, Lihao Nan, James G. Burchfield, Jean Yee Hwa Yang, Dacheng Tao, Pengyi Yang
2019	B	`conf`	Challenges for Brain Data Analysis in VR Environments. PacificVis Sabrina Jaeger, Karsten Klein, Lucas Joos, Johannes Zagermann, Michael de Ridder, Jinman Kim, Jean Yee Hwa Yang, Ulrike Pfeil, Harald Reiterer, Falk Schreiber
2019	J	`jnl`	DCARS: differential correlation across ranked samples. Bioinform. Shila Ghazanfar, Dario Strbenac, John T. Ormerod, Jean Yee Hwa Yang, Ellis Patrick
2019	J	`jnl`	Impact of similarity metrics on single-cell RNA-seq data clustering. Briefings Bioinform. Taiyun Kim, Irene Rui Chen, Yingxin Lin, Andy Yi-Yang Wang, Jean Yee Hwa Yang, Pengyi Yang
2019	J	`jnl`	bcGST - an interactive bias-correction method to identify over-represented gene-sets in boutique arrays. Bioinform. Kevin Y. X. Wang, Alexander M. Menzies, Ines P. Silva, James S. Wilmott, Yibing Yan, Matthew Wongchenko, Richard F. Kefford, Richard A. Scolyer, Georgina V. Long, Garth Tarr, Samuel Müller, Jean Yee Hwa Yang
2019	J	`jnl`	scDC: single cell differential composition analysis. BMC Bioinform. Yue Cao, Yingxin Lin, John T. Ormerod, Pengyi Yang, Jean Yee Hwa Yang, Kitty K. Lo
2018	J	`jnl`	Diagonal Discriminant Analysis with Feature Selection for High Dimensional Data. CoRR Sarah Elizabeth Romanes, John Thomas Ormerod, Jean Yee Hwa Yang
2017	J	`jnl`	Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells. Bioinform. Pengyi Yang, Andrew J. Oldfield, Taiyun Kim, Andrian Yang, Jean Yee Hwa Yang, Joshua Wing Kei Ho
2017	A*	`conf`	Positive unlabeled learning via wrapper-based adaptive sampling. IJCAI Pengyi Yang, Wei Liu, Jean Yee Hwa Yang
2016	J	`jnl`	Characterizing mutation-expression network relationships in multiple cancers. Comput. Biol. Chem. Shila Ghazanfar, Jean Yee Hwa Yang
2016	J	`jnl`	Integrated single cell data analysis reveals cell specific networks and novel coactivation markers. BMC Syst. Biol. Shila Ghazanfar, Adam J. Bisogni, John T. Ormerod, David M. Lin, Jean Yee Hwa Yang
2015	J	`jnl`	ClassifyR: an R package for performance assessment of classification with applications to transcriptomics. Bioinform. Dario Strbenac, Graham J. Mann, John T. Ormerod, Jean Yee Hwa Yang
2015	J	`jnl`	Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data. Bioinform. Ellis Patrick, Michael J. Buckley, Samuel Müller, David M. Lin, Jean Yee Hwa Yang
2015	J	`jnl`	Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data. PLoS Comput. Biol. Pengyi Yang, Xiaofeng Zheng, Vivek Jayaswal, Guang Hu, Jean Yee Hwa Yang, Raja Jothi
2013	—	`conf`	Latin square dataset for evaluating the accuracy of mass spectrometry-based protein identification and quantification. BIBM Penghao Wang, Jean Yee Hwa Yang, Mark Raftery, Ling Zhong, Susan R. Wilson
2012	J	`jnl`	Improving X!Tandem on Peptide Identification from Mass Spectrometry by Self-Boosted Percolator. IEEE ACM Trans. Comput. Biol. Bioinform. Pengyi Yang, Jie Ma, Penghao Wang, Yunping Zhu, Bing Bing Zhou, Jean Yee Hwa Yang
2012	J	`jnl`	OCAP: an open comprehensive analysis pipeline for iTRAQ. Bioinform. Penghao Wang, Pengyi Yang, Jean Yee Hwa Yang
2011	J	`jnl`	Gene-gene interaction filtering with ensemble of filters. BMC Bioinform. Pengyi Yang, Joshua Wing Kei Ho, Jean Yee Hwa Yang, Bing Bing Zhou
2011	J	`jnl`	Two-Step Cross-Entropy Feature Selection for Microarrays - Power Through Complementarity. IEEE ACM Trans. Comput. Biol. Bioinform. Tim Peters, David W. Bulger, To-ha Loi, Jean Yee Hwa Yang, David Ma
2010	J	`jnl`	A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data. Bioinform. Penghao Wang, Pengyi Yang, Jonathan Arthur, Jean Yee Hwa Yang