Jean Peccoud

23 papers C 1Misc 3Journal 16Unranked 2
YearRankTypeTitle / Venue / Authors
2026 J jnl
Analysis of inspection allocation strategies for genetic manufacturing systems with a generalised nonlinear program.
Int. J. Prod. Res.
Gregory Purdy, Kimberly P. Ellis, Melissa Tilashalski, Jean Peccoud, Jaime A. Camelio
2024 J jnl
PlasCAT: Plasmid Cloud Assembly Tool.
Bioinform.
Samuel J. Peccoud, Casey-Tyler Berezin, Sarah I. Hernandez, Jean Peccoud
2024 J jnl
Stochastic model of vesicular stomatitis virus replication reveals mutational effects on virion production.
PLoS Comput. Biol.
Connor R. King, Casey-Tyler Berezin, Jean Peccoud
2023 J jnl
Introduction to the Special Issue on BioFoundries and Cloud Laboratories.
ACM J. Emerg. Technol. Comput. Syst.
Douglas Densmore, Nathan J. Hillson, Eric Klavins, Chris J. Myers, Jean Peccoud, Giovanni Stracquadanio
2023 J jnl
Ten simple rules for managing laboratory information.
PLoS Comput. Biol.
Casey-Tyler Berezin, Luis U. Aguilera, Sonja Billerbeck, Philip E. Bourne, Douglas Densmore, Paul S. Freemont, Thomas E. Gorochowski, Sarah I. Hernandez, Nathan J. Hillson, Connor R. King, Michael Köpke, Shuyi Ma, Katie M. Miller, Tae Seok Moon, Jason H. Moore, Brian Munsky, Chris J. Myers, Dequina A. Nicholas, Samuel J. Peccoud, Wen Zhou, Jean Peccoud
2020 J jnl
Synthesizing DNA molecules with identity-based digital signatures to prevent malicious tampering and enabling source attribution.
J. Comput. Secur.
Diptendu Mohan Kar, Indrajit Ray, Jenna Gallegos, Jean Peccoud, Indrakshi Ray
2018 — conf
CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models.
BCB
Aditya Pratapa, Neil Adames, Pavel K. Kraikivski, Nicholas Franzese, John J. Tyson, Jean Peccoud, T. M. Murali
2018 J jnl
CrossPlan: systematic planning of genetic crosses to validate mathematical models.
Bioinform.
Aditya Pratapa, Neil Adames, Pavel K. Brazhnik, Nicholas Franzese, John J. Tyson, Jean Peccoud, T. M. Murali
2018 C conf
Digital Signatures to Ensure the Authenticity and Integrity of Synthetic DNA Molecules.
NSPW
Diptendu Mohan Kar, Indrajit Ray, Jenna Gallegos, Jean Peccoud
2017 J jnl
GraphSpace: stimulating interdisciplinary collaborations in network biology.
Bioinform.
Aditya Bharadwaj, Divit P. Singh, Anna M. Ritz, Allison N. Tegge, Christopher L. Poirel, Pavel K. Brazhnik, Neil Adames, Kurt Luther, Shiv D. Kale, Jean Peccoud, John J. Tyson, T. M. Murali
2016 J jnl
A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability.
PLoS Comput. Biol.
Debashis Barik, David A. Ball, Jean Peccoud, John J. Tyson
2014 J jnl
Development of a domain-specific genetic language to design
Bioinform.
Mandy L. Wilson, Sakiko Okumoto, Laura Adam, Jean Peccoud
2014 J jnl
If You Can't Measure It, You Can't Manage It.
PLoS Comput. Biol.
Jean Peccoud
2010 Misc conf
Co-Design in Synthetic Biology: A System-Level Analysis of the Development of an Environmental Sensing Device.
Pacific Symposium on Biocomputing
David A. Ball, Matthew W. Lux, Russell R. Graef, Matthew W. Peterson, Jane D. Valenti, John Dileo, Jean Peccoud
2009 J jnl
Modeling Structure-Function Relationships in Synthetic DNA Sequences using Attribute Grammars.
PLoS Comput. Biol.
Yizhi Cai, Matthew W. Lux, Laura Adam, Jean Peccoud
2009 J jnl
Writing DNA with GenoCAD
Nucleic Acids Res.
Michael J. Czar, Yizhi Cai, Jean Peccoud
2007 J jnl
A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts.
Bioinform.
Yizhi Cai, Brian Hartnett, Claes Gustafsson, Jean Peccoud
2007 J jnl
Möbius: an integrated discrete-event modeling environment.
Bioinform.
Jean Peccoud, Tod Courtney, William H. Sanders
2006 J jnl
Dynamic partitioning for hybrid simulation of the bistable HIV-1 transactivation network.
Bioinform.
Mark Griffith, Tod Courtney, Jean Peccoud, William H. Sanders
2005 Misc conf
Parameterization of a Nonlinear Genotype to Phenotype Map Using Molecular Networks.
Pacific Symposium on Biocomputing
Jean Peccoud, Kent Vander Velden
2003 — conf
Modeling networks of molecular interactions in the living cell: structure, dynamics, and applications.
PNPM
Kent Vander Velden, Jean Peccoud
1999 Misc conf
Analysis of the Stabilizing Effect of ROM on the Genetic Network Controlling ColE1 Plasmid Replication.
Pacific Symposium on Biocomputing
P. J. E. Goss, Jean Peccoud
1991 — —
Dissection moléculaire du site de fixation de l'antigène d'une molécule d'histocompatibilité de classe II et modélisation stochastique des interactions macromoléculaires au sein de la cellule vivante. (Molecular dissection of the antigen binding site of a major histocompatibility complex class II molecule and stochastic modelling of macromolecular interactions in the living cell).
Jean Peccoud